Rh4DG335700

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0009397
Physical Location & Seq
Reverse (-)
55809334 .. 55814901
5568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG335700.1

Sequence Viewer

Length: 960 bp
ATGTCGGGAACGGGATTGCCGGTGACGCGAGGCCGCGGAGAAGATCGGTTTTACAATCCGGCGAGAGCGCGTAGGGCCCACCAGAGCCAGAAAGACGCCGAGCAACTTCGCCGAGCTCAGAGCGACGTCACGCCCAGTCAATCGCCTTCGCTCAAGGGCGGCAACCCGAACCGGGAGCCGGAGAACCGGGTCGGGTCGGATGTGCAGCCTCCCAAGCGGGTCGCCGTGCCCACTGGCGAGCCGGCCGTGAAGCCGTTGAGTAATCTCGAGCGGTTCTTGCAGTCCATCACGCCCTCAGTTCCTGCTCAGTACCTCTCCAAGACGACGATGAGAGGATTGAGTACATGTGACGTGGAGTTTCAGCCATTCTTTGTTCTTGGTGATCTGTGGGAGTCTTTCAAGGAGTGGAGCGCTTACGGTGCCGGAGTGCCTCTGATTTTGAATGATAGTGACTTTGTGGTCCAGTACTATGTCCCTTATTTATCCGGTATTCAAATATACGGCAACTCTATGAAATTGTCGTCTAAGTCAAGGCGACCAGATGAGGATAGTGACAGTGAATTTCGGGATTCTAGTAGTGATGGTAGCTGTGATGTTGAACCGGTTAAAATAAAATATTTGAGGGAGCAGCAGAATCATCAAATGTCGAGTAAAATTCCTCAAAGGTTAGAAAGCATATCTCTGAGAGATCAGCATTATCCACTCCAAGAGGACTGCTCCAGTGATGAGGGTGAACCTGTAAATTCACAAGGTTGCTTATTATTTGAGTATTTTGAACGTGATCTTCCTTATTGCCGTGAGCCTTTAGCTGATAAGATATTAGATCTTGCTTTTCGTTTTCCTGAGCTGAAGACAATAAGAAGTTGTGATCTACTGGCTTCCAGTTGGATTTCTGTTGCATGGTACTATCAAACTCTGTATTTGGTTCAGTGGTTTGTACACAATTATTTGACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

319

Amino Acids

36.35

Weight (kDa)

5.42

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 87 - 302 3.6e-62 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 458
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 3 cut(s) 28, 36, 70
AciI CCGC 5 cut(s) 34, 36, 159, 217, 271
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 3 cut(s) 560, 654, 742
AcuI CTGAAG 1 cut(s) 869
AcyI GRCGYC 2 cut(s) 96, 126
AfaI GTAC 5 cut(s) 311, 343, 467, 905, 939
AfeI AGCGCT 1 cut(s) 412
AfiI CCNNNNNNNGG 2 cut(s) 172, 178
AflIII ACRYGT 1 cut(s) 344
AgeI ACCGGT 1 cut(s) 601
AgsI TTSAA 5 cut(s) 400, 442, 494, 599, 776
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 4 cut(s) 116, 588, 809, 847
AluI AGCT 4 cut(s) 116, 588, 809, 847
Alw21I GWGCWC 1 cut(s) 118
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 266
Aor51HI AGCGCT 1 cut(s) 412
AoxI GGCC 3 cut(s) 31, 75, 243
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 205, 628
ApoI RAATTY 3 cut(s) 560, 654, 742
AsiGI ACCGGT 1 cut(s) 601
AspLEI GCGC 2 cut(s) 70, 413
AspS9I GGNCC 3 cut(s) 75, 76, 460
AsuC2I CCSGG 2 cut(s) 173, 188
AsuHPI GGTGA 3 cut(s) 34, 392, 743
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 2 cut(s) 79, 231
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 79, 118
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 2 cut(s) 217, 640
BccI CCATC 2 cut(s) 293, 575
BceAI ACGGC 5 cut(s) 209, 230, 238, 517, 780
BcnI CCSGG 2 cut(s) 173, 188
BfaI CTAG 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 414
BglII AGATCT 1 cut(s) 823
BisI GCNGC 4 cut(s) 34, 160, 206, 629
BlsI GCNGC 4 cut(s) 35, 161, 207, 630
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 2 cut(s) 173, 188
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 3 cut(s) 75, 76, 460
BmiI GGNNCC 3 cut(s) 77, 177, 421
BmrFI CCNGG 2 cut(s) 173, 188
BmrI ACTGGG 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpmI CTGGAG 1 cut(s) 703
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 173, 188
BsaHI GRCGYC 2 cut(s) 96, 126
BsaJI CCNNGG 1 cut(s) 34
BsaWI WCCGGW 2 cut(s) 485, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 178
Bse118I RCCGGY 3 cut(s) 19, 241, 601
Bse1I ACTGG 6 cut(s) 135, 238, 463, 720, 879, 882
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 2 cut(s) 172, 178
BseMII CTCAG 5 cut(s) 131, 309, 320, 674, 834
BseNI ACTGG 6 cut(s) 135, 238, 463, 720, 879, 882
BseSI GKGCMC 2 cut(s) 79, 231
BseX3I CGGCCG 1 cut(s) 243
BseXI GCAGC 2 cut(s) 217, 640
BsgI GTGCAG 1 cut(s) 224
Bsh1236I CGCG 3 cut(s) 28, 36, 70
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 33, 77, 245
BshNI GGYRCC 1 cut(s) 419
BshTI ACCGGT 1 cut(s) 601
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 602
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 172, 178
BsmFI GGGAC 1 cut(s) 458
BsnI GGCC 3 cut(s) 33, 77, 245
BsoBI CYCGRG 1 cut(s) 266
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 79, 118, 231
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 6 cut(s) 43, 382, 688, 781, 823, 868
BspACI CCGC 5 cut(s) 34, 36, 159, 217, 271
BspANI GGCC 3 cut(s) 33, 77, 245
BspCNI CTCAG 5 cut(s) 130, 308, 319, 675, 835
BspFNI CGCG 3 cut(s) 28, 36, 70
BspLI GGNNCC 3 cut(s) 77, 177, 421
BspT107I GGYRCC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 271
BsrFI RCCGGY 3 cut(s) 19, 241, 601
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 6 cut(s) 135, 238, 463, 720, 879, 882
BssAI RCCGGY 3 cut(s) 19, 241, 601
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 6 cut(s) 43, 382, 688, 781, 823, 868
BssNI GRCGYC 2 cut(s) 96, 126
Bst4CI ACNGT 2 cut(s) 419, 557
BstACI GRCGYC 2 cut(s) 96, 126
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 2 cut(s) 239, 243
BstDEI CTNAG 6 cut(s) 117, 295, 306, 525, 683, 843
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 3 cut(s) 28, 36, 70
BstH2I RGCGCY 1 cut(s) 414
BstHHI GCGC 2 cut(s) 70, 413
BstKTI GATC 6 cut(s) 46, 385, 691, 784, 826, 871
BstMBI GATC 6 cut(s) 43, 382, 688, 781, 823, 868
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 171, 186
BstSLI GKGCMC 2 cut(s) 79, 231
BstUI CGCG 3 cut(s) 28, 36, 70
BstV1I GCAGC 2 cut(s) 217, 640
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BstZI CGGCCG 1 cut(s) 243
BsuRI GGCC 3 cut(s) 33, 77, 245
BtgI CCRYGG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 4 cut(s) 231, 562, 727, 935
Cac8I GCNNGC 2 cut(s) 239, 243
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 2 cut(s) 70, 413
Cfr10I RCCGGY 3 cut(s) 19, 241, 601
Cfr13I GGNCC 3 cut(s) 75, 76, 460
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 2 cut(s) 34, 104
Csp6I GTAC 5 cut(s) 310, 342, 466, 904, 938
CspAI ACCGGT 1 cut(s) 601
CviAII CATG 2 cut(s) 345, 900
CviQI GTAC 5 cut(s) 310, 342, 466, 904, 938
DdeI CTNAG 6 cut(s) 117, 295, 306, 525, 683, 843
DpnI GATC 6 cut(s) 45, 384, 690, 783, 825, 870
DpnII GATC 6 cut(s) 43, 382, 688, 781, 823, 868
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 1 cut(s) 243
EagI CGGCCG 1 cut(s) 243
Ecl136II GAGCTC 1 cut(s) 116
EclXI CGGCCG 1 cut(s) 243
Eco24I GRGCYC 2 cut(s) 79, 118
Eco47I GGWCC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 412
Eco52I CGGCCG 1 cut(s) 243
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 869
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 79, 118
FaeI CATG 2 cut(s) 348, 903
FaiI YATR 6 cut(s) 346, 471, 499, 512, 677, 901
FaqI GGGAC 1 cut(s) 458
FatI CATG 2 cut(s) 344, 899
FauI CCCGC 1 cut(s) 210
Fnu4HI GCNGC 4 cut(s) 34, 160, 206, 629
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 2 cut(s) 79, 118
Fsp4HI GCNGC 4 cut(s) 34, 160, 206, 629
FspBI CTAG 1 cut(s) 573
GlaI GCGC 2 cut(s) 69, 412
GluI GCNGC 4 cut(s) 34, 160, 206, 629
GsuI CTGGAG 1 cut(s) 703
HaeII RGCGCY 1 cut(s) 414
HaeIII GGCC 3 cut(s) 33, 77, 245
HapII CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 602
HgaI GACGC 2 cut(s) 34, 104
HhaI GCGC 2 cut(s) 70, 413
Hin1I GRCGYC 2 cut(s) 96, 126
Hin1II CATG 2 cut(s) 348, 903
Hin6I GCGC 2 cut(s) 68, 411
HinP1I GCGC 2 cut(s) 68, 411
HinfI GANTC 3 cut(s) 392, 569, 634
HpaII CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 602
HphI GGTGA 3 cut(s) 34, 392, 743
Hpy166II GTNNAC 2 cut(s) 734, 940
Hpy188I TCNGA 4 cut(s) 120, 199, 435, 684
Hpy188III TCNNGA 4 cut(s) 6, 266, 566, 842
Hpy8I GTNNAC 2 cut(s) 734, 940
Hpy99I CGWCG 2 cut(s) 128, 328
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 419, 557
HpyCH4IV ACGT 3 cut(s) 126, 351, 778
HpyCH4V TGCA 3 cut(s) 205, 280, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
HpyF3I CTNAG 6 cut(s) 117, 295, 306, 525, 683, 843
HpySE526I ACGT 3 cut(s) 126, 351, 778
Hsp92I GRCGYC 2 cut(s) 96, 126
Hsp92II CATG 2 cut(s) 348, 903
HspAI GCGC 2 cut(s) 68, 411
KroI GCCGGC 1 cut(s) 241
KroNI GCCGGC 1 cut(s) 243
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 6 cut(s) 43, 382, 688, 781, 823, 868
LmnI GCTCC 4 cut(s) 175, 408, 625, 722
Lsp1109I GCAGC 2 cut(s) 217, 640
MaeI CTAG 1 cut(s) 573
MaeII ACGT 3 cut(s) 126, 351, 778
MaeIII GTNAC 5 cut(s) 22, 127, 347, 449, 551
MalI GATC 6 cut(s) 45, 384, 690, 783, 825, 870
MbiI CCGCTC 1 cut(s) 271
MboI GATC 6 cut(s) 43, 382, 688, 781, 823, 868
MboII GAAGA 3 cut(s) 53, 776, 862
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 3 cut(s) 79, 118, 231
MluCI AATT 6 cut(s) 515, 560, 654, 742, 943, 955
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 177, 866
MroNI GCCGGC 1 cut(s) 241
MseI TTAA 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 9 cut(s) 20, 59, 172, 179, 187, 242, 423, 486, 602
MspR9I CCNGG 2 cut(s) 173, 188
MvnI CGCG 3 cut(s) 28, 36, 70
MwoI GCNNNNNNNGC 5 cut(s) 25, 74, 214, 277, 419
NaeI GCCGGC 1 cut(s) 243
NciI CCSGG 2 cut(s) 173, 188
NdeII GATC 6 cut(s) 43, 382, 688, 781, 823, 868
NgoMIV GCCGGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 348, 903
NlaIV GGNNCC 3 cut(s) 77, 177, 421
NmeAIII GCCGAG 2 cut(s) 124, 137
NmuCI GTSAC 5 cut(s) 22, 127, 347, 449, 551
NspI RCATGY 1 cut(s) 348
PaeR7I CTCGAG 1 cut(s) 266
PciI ACATGT 1 cut(s) 344
PdiI GCCGGC 1 cut(s) 243
PfeI GAWTC 2 cut(s) 569, 634
PinAI ACCGGT 1 cut(s) 601
PkrI GCNGC 4 cut(s) 35, 161, 207, 630
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PscI ACATGT 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 77, 177, 421
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 3 cut(s) 75, 76, 460
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 823
RsaI GTAC 5 cut(s) 311, 343, 467, 905, 939
RsaNI GTAC 5 cut(s) 310, 342, 466, 904, 938
SacI GAGCTC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 1 cut(s) 606
SatI GCNGC 4 cut(s) 34, 160, 206, 629
Sau3AI GATC 6 cut(s) 43, 382, 688, 781, 823, 868
Sau96I GGNCC 3 cut(s) 75, 76, 460
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 173, 188
SduI GDGCHC 3 cut(s) 79, 118, 231
Sfr274I CTCGAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 152, 266
SmoI CTYRAG 2 cut(s) 152, 266
Sse9I AATT 6 cut(s) 515, 560, 654, 742, 943, 955
SsiI CCGC 5 cut(s) 34, 36, 159, 217, 271
SspI AATATT 1 cut(s) 617
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 2 cut(s) 171, 186
TaaI ACNGT 2 cut(s) 419, 557
TaiI ACGT 3 cut(s) 129, 354, 781
TaqI TCGA 2 cut(s) 267, 647
TasI AATT 6 cut(s) 515, 560, 654, 742, 943, 955
TatI WGTACW 3 cut(s) 341, 465, 937
TauI GCSGC 2 cut(s) 36, 162
TfiI GAWTC 2 cut(s) 569, 634
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 4 cut(s) 238, 562, 727, 935
TseFI GTSAC 5 cut(s) 22, 127, 347, 449, 551
TseI GCWGC 2 cut(s) 205, 628
Tsp45I GTSAC 5 cut(s) 22, 127, 347, 449, 551
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 4 cut(s) 238, 562, 727, 935
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 3 cut(s) 560, 654, 742
XceI RCATGY 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 1 cut(s) 573
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.