Rw4G028830

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0009397
Physical Location & Seq
Reverse (-)
55423816 .. 55427830
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G028830.1

Sequence Viewer

Length: 1167 bp
ATGTTGGGAACGGGATTGCCGGTGACGCGTGGCCGCGGAGAAGATCGGTTTTACAATCCGGCGAGAGCGCGTAGGGCCCACCAGAGCCAGAAAGCCGCCGAGCAACTTCGGCGAGCTCAGAGCGACCGGGTCGGGTCGGATGTGCAGCCTCCCAAGCGGGTCGCCGTGCCCGCTGGCGAGCCCGCCGCGAAGCCGTTGAGTAATCTCGAGCGGTTCTTGCAGTCCATCACGCCCTCAGTTCCTGCTCAGTACCTCTCCAAGACGACGATTAGAGGATTGAGTACATGTGACGTGGAGTTTCAGCCATTCTTTGTTCTTGGTGATCTGTGGGAGTCTTTCAAGGAGTGGAGCGCTTACGGTGCCGGAGTGCCTCTGATTTTGAATGATAGTGACTTTGTGGTCCAGTACTATGTCCCTTATTTATCCGGTATTCAAATATACGGCAACTCTATGAAATTGTCATCTAAGTCAAGGCGACCAGATGAGGATAGTGACAGTGAATTTCGGGATTCTAGTAGTGATGGTAGCTGTGATGTTGAACCGGTTAAAATAAAATATTTGAGGGAGCAGCGGAATCATCAAATGTCGAGTGAAATTCCTCAAAGGTTAGAAAGCATATCTCTGAGAGATCAGCATTATCCACTCCAAGAGGACTGCTCCAGTGATGAGGGTGAACCTGTAAATTCACAAGGTTGCTTATTATTTGAGTATTTTGAACGTGATCTTCCTTATTGCCGTGAGCCTTTAGCTGATAAGATATTAGATCTTGCTTTTCGTTTTCCTGAGCTGAAGACAATAAGAAGTTGTGATCTACTGGCTTCCAGTTGGATTTCTGTTGCATGGTATCCAATTTACAGGATTCCAACAGGACCAACTTTAAAGGATCTTGATGCGTGCTTTCTGTCATACCATTCACTTTTTACCCCCGTGGGAGATGTACAAGATCCCCGGGCTCCTGTAGTAACCTATCCGAGTGACATGGATGGTATCCCTAAGATGTCCTTGCCTGTTTTTGGTCTTGCTTCATACAAGTTCAGAGGGTCCTTGTGGACTCCTAGTGGGGGATTGGAACGACAATTAGCGAACTCCCTCTTGCAGGCCACTGATGACTTTCTAAGGCTGCATCAGGTCAATCATCCAGATTTTCTGTTCTTCAGCCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

388

Amino Acids

43.91

Weight (kDa)

5.65

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 67 - 385 3e-101 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 211
AccII CGCG 4 cut(s) 28, 36, 70, 188
AciI CCGC 9 cut(s) 34, 36, 96, 157, 171, 183, 186, 211, 571
AclWI GGATC 2 cut(s) 891, 938
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 3 cut(s) 500, 594, 682
AcuI CTGAAG 2 cut(s) 809, 1138
AfaI GTAC 4 cut(s) 251, 283, 407, 939
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 1013, 1061, 1096
AflIII ACRYGT 2 cut(s) 26, 284
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 5 cut(s) 340, 382, 434, 539, 716
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 4 cut(s) 116, 528, 749, 787
AluI AGCT 4 cut(s) 116, 528, 749, 787
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 2 cut(s) 891, 938
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 2 cut(s) 206, 948
Aor51HI AGCGCT 1 cut(s) 352
AoxI GGCC 3 cut(s) 31, 75, 1098
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 145, 568, 1120
ApoI RAATTY 3 cut(s) 500, 594, 682
AsiGI ACCGGT 1 cut(s) 541
AspLEI GCGC 2 cut(s) 70, 353
AspS9I GGNCC 5 cut(s) 75, 76, 400, 869, 1041
AsuC2I CCSGG 3 cut(s) 128, 949, 950
AsuHPI GGTGA 3 cut(s) 34, 332, 683
AvaI CYCGRG 2 cut(s) 206, 948
AvaII GGWCC 3 cut(s) 400, 869, 1041
BaeGI GKGCMC 2 cut(s) 79, 171
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 4 cut(s) 79, 118, 183, 955
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 157, 580, 1107
BccI CCATC 3 cut(s) 233, 515, 977
BceAI ACGGC 5 cut(s) 149, 178, 457, 720, 1143
BciVI GTATCC 2 cut(s) 855, 998
BcnI CCSGG 3 cut(s) 128, 949, 950
BfaI CTAG 2 cut(s) 513, 1056
BfmI CTRYAG 1 cut(s) 957
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 2 cut(s) 855, 998
BglII AGATCT 1 cut(s) 763
BisI GCNGC 6 cut(s) 34, 96, 146, 186, 569, 1121
BlsI GCNGC 6 cut(s) 35, 97, 147, 187, 570, 1122
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 3 cut(s) 128, 949, 950
Bme18I GGWCC 3 cut(s) 400, 869, 1041
BmeT110I CYCGRG 2 cut(s) 206, 948
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 5 cut(s) 75, 76, 400, 869, 1041
BmiI GGNNCC 4 cut(s) 77, 361, 954, 1042
BmrFI CCNGG 3 cut(s) 128, 949, 950
BmsI GCATC 2 cut(s) 880, 1132
BpiI GAAGAC 1 cut(s) 797
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 1 cut(s) 643
Bpu10I CCTNAGC 1 cut(s) 783
BpuMI CCSGG 3 cut(s) 128, 949, 950
BsaJI CCNNGG 4 cut(s) 34, 927, 947, 948
BsaWI WCCGGW 2 cut(s) 425, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 1013, 1061, 1096
Bse118I RCCGGY 2 cut(s) 19, 541
Bse1I ACTGG 4 cut(s) 403, 660, 819, 822
BseDI CCNNGG 4 cut(s) 34, 927, 947, 948
BseGI GGATG 3 cut(s) 145, 988, 1135
BseLI CCNNNNNNNGG 3 cut(s) 1013, 1061, 1096
BseMII CTCAG 5 cut(s) 131, 249, 260, 614, 774
BseNI ACTGG 4 cut(s) 403, 660, 819, 822
BseSI GKGCMC 2 cut(s) 79, 171
BseXI GCAGC 3 cut(s) 157, 580, 1107
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 4 cut(s) 28, 36, 70, 188
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 3 cut(s) 33, 77, 1100
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 541
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 206, 948
BsiSI CCGG 7 cut(s) 20, 59, 127, 363, 426, 542, 949
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 1013, 1061, 1096
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 3 cut(s) 33, 77, 1100
BsoBI CYCGRG 2 cut(s) 206, 948
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 5 cut(s) 79, 118, 171, 183, 955
Bsp1407I TGTACA 1 cut(s) 937
Bsp143I GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
BspACI CCGC 9 cut(s) 34, 36, 96, 157, 171, 183, 186, 211, 571
BspANI GGCC 3 cut(s) 33, 77, 1100
BspCNI CTCAG 5 cut(s) 130, 248, 259, 615, 775
BspFNI CGCG 4 cut(s) 28, 36, 70, 188
BspLI GGNNCC 4 cut(s) 77, 361, 954, 1042
BspPI GGATC 2 cut(s) 891, 938
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 211
BsrFI RCCGGY 2 cut(s) 19, 541
BsrGI TGTACA 1 cut(s) 937
BsrI ACTGG 4 cut(s) 403, 660, 819, 822
BssAI RCCGGY 2 cut(s) 19, 541
BssECI CCNNGG 4 cut(s) 34, 927, 947, 948
BssMI GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
Bst4CI ACNGT 2 cut(s) 359, 497
BstAUI TGTACA 1 cut(s) 937
BstC8I GCNNGC 7 cut(s) 114, 171, 175, 179, 183, 895, 1098
BstDEI CTNAG 8 cut(s) 117, 235, 246, 465, 623, 783, 993, 1115
BstDSI CCRYGG 2 cut(s) 34, 927
BstENI CCTNNNNNAGG 1 cut(s) 1094
BstF5I GGATG 3 cut(s) 145, 988, 1135
BstFNI CGCG 4 cut(s) 28, 36, 70, 188
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 70, 353
BstKTI GATC 8 cut(s) 46, 325, 631, 724, 766, 811, 886, 946
BstMBI GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 126, 947, 948
BstSFI CTRYAG 1 cut(s) 957
BstSLI GKGCMC 2 cut(s) 79, 171
BstUI CGCG 4 cut(s) 28, 36, 70, 188
BstV1I GCAGC 3 cut(s) 157, 580, 1107
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 3 cut(s) 763, 883, 943
BstYI RGATCY 3 cut(s) 763, 883, 943
BsuI GTATCC 2 cut(s) 855, 998
BsuRI GGCC 3 cut(s) 33, 77, 1100
BtgI CCRYGG 2 cut(s) 34, 927
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 145, 988, 1135
BtsIMutI CAGTG 3 cut(s) 502, 667, 1101
Cac8I GCNNGC 7 cut(s) 114, 171, 175, 179, 183, 895, 1098
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 2 cut(s) 70, 353
Cfr10I RCCGGY 2 cut(s) 19, 541
Cfr13I GGNCC 5 cut(s) 75, 76, 400, 869, 1041
Cfr42I CCGCGG 1 cut(s) 37
Cfr9I CCCGGG 1 cut(s) 948
CseI GACGC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 250, 282, 406, 938
CspAI ACCGGT 1 cut(s) 541
CviAII CATG 3 cut(s) 285, 840, 979
CviQI GTAC 4 cut(s) 250, 282, 406, 938
DdeI CTNAG 8 cut(s) 117, 235, 246, 465, 623, 783, 993, 1115
DpnI GATC 8 cut(s) 45, 324, 630, 723, 765, 810, 885, 945
DpnII GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
DraI TTTAAA 1 cut(s) 879
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 4 cut(s) 79, 118, 183, 955
Eco47I GGWCC 3 cut(s) 400, 869, 1041
Eco47III AGCGCT 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 809, 1138
Eco88I CYCGRG 2 cut(s) 206, 948
EcoICRI GAGCTC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 1094
EcoO109I RGGNCCY 2 cut(s) 75, 1041
EcoT38I GRGCYC 4 cut(s) 79, 118, 183, 955
FaeI CATG 3 cut(s) 288, 843, 982
FaiI YATR 9 cut(s) 286, 411, 439, 452, 617, 841, 907, 980, 1027
FalI AAGNNNNNCTT 2 cut(s) 986, 1018
FaqI GGGAC 1 cut(s) 398
FatI CATG 3 cut(s) 284, 839, 978
FauI CCCGC 3 cut(s) 150, 178, 190
Fnu4HI GCNGC 6 cut(s) 34, 96, 146, 186, 569, 1121
FokI GGATG 3 cut(s) 152, 995, 1122
FriOI GRGCYC 4 cut(s) 79, 118, 183, 955
Fsp4HI GCNGC 6 cut(s) 34, 96, 146, 186, 569, 1121
FspBI CTAG 2 cut(s) 513, 1056
GlaI GCGC 2 cut(s) 69, 352
GluI GCNGC 6 cut(s) 34, 96, 146, 186, 569, 1121
GsuI CTGGAG 1 cut(s) 643
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 3 cut(s) 33, 77, 1100
HapII CCGG 7 cut(s) 20, 59, 127, 363, 426, 542, 949
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 70, 353
Hin1II CATG 3 cut(s) 288, 843, 982
Hin6I GCGC 2 cut(s) 68, 351
HinP1I GCGC 2 cut(s) 68, 351
HinfI GANTC 5 cut(s) 332, 509, 574, 859, 1051
HpaII CCGG 7 cut(s) 20, 59, 127, 363, 426, 542, 949
HphI GGTGA 3 cut(s) 34, 332, 683
Hpy166II GTNNAC 2 cut(s) 674, 1050
Hpy188I TCNGA 6 cut(s) 120, 139, 375, 624, 972, 1037
Hpy188III TCNNGA 5 cut(s) 206, 506, 782, 887, 1139
Hpy8I GTNNAC 2 cut(s) 674, 1050
Hpy99I CGWCG 2 cut(s) 268, 1164
HpyCH4III ACNGT 2 cut(s) 359, 497
HpyCH4IV ACGT 2 cut(s) 291, 718
HpyCH4V TGCA 5 cut(s) 145, 220, 839, 1096, 1123
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
HpyF3I CTNAG 8 cut(s) 117, 235, 246, 465, 623, 783, 993, 1115
HpySE526I ACGT 2 cut(s) 291, 718
Hsp92II CATG 3 cut(s) 288, 843, 982
HspAI GCGC 2 cut(s) 68, 351
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
LmnI GCTCC 4 cut(s) 348, 565, 662, 958
Lsp1109I GCAGC 3 cut(s) 157, 580, 1107
LweI GCATC 2 cut(s) 880, 1132
MaeI CTAG 2 cut(s) 513, 1056
MaeII ACGT 2 cut(s) 291, 718
MaeIII GTNAC 6 cut(s) 22, 287, 389, 491, 961, 974
MalI GATC 8 cut(s) 45, 324, 630, 723, 765, 810, 885, 945
MbiI CCGCTC 1 cut(s) 211
MboI GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
MboII GAAGA 4 cut(s) 53, 716, 802, 1144
MflI RGATCY 3 cut(s) 763, 883, 943
MhlI GDGCHC 5 cut(s) 79, 118, 171, 183, 955
MluCI AATT 6 cut(s) 455, 500, 594, 682, 849, 1076
MluI ACGCGT 1 cut(s) 26
MlyI GAGTC 2 cut(s) 341, 1045
MmeI TCCRAC 3 cut(s) 117, 806, 887
MseI TTAA 2 cut(s) 546, 878
MspA1I CMGCKG 3 cut(s) 36, 173, 571
MspI CCGG 7 cut(s) 20, 59, 127, 363, 426, 542, 949
MspR9I CCNGG 3 cut(s) 128, 949, 950
MvnI CGCG 4 cut(s) 28, 36, 70, 188
MwoI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
NciI CCSGG 3 cut(s) 128, 949, 950
NdeII GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
NlaIII CATG 3 cut(s) 288, 843, 982
NlaIV GGNNCC 4 cut(s) 77, 361, 954, 1042
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 5 cut(s) 22, 287, 389, 491, 974
NspI RCATGY 1 cut(s) 288
PaeR7I CTCGAG 1 cut(s) 206
PciI ACATGT 1 cut(s) 284
PfeI GAWTC 3 cut(s) 509, 574, 859
PflFI GACNNNGTC 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 6 cut(s) 35, 97, 147, 187, 570, 1122
PleI GAGTC 2 cut(s) 340, 1045
PpsI GAGTC 2 cut(s) 340, 1045
PpuMI RGGWCCY 1 cut(s) 1041
PscI ACATGT 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 1041
PspN4I GGNNCC 4 cut(s) 77, 361, 954, 1042
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 5 cut(s) 75, 76, 400, 869, 1041
PspPPI RGGWCCY 1 cut(s) 1041
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 3 cut(s) 763, 883, 943
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 4 cut(s) 251, 283, 407, 939
RsaNI GTAC 4 cut(s) 250, 282, 406, 938
SacI GAGCTC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 546, 878
SatI GCNGC 6 cut(s) 34, 96, 146, 186, 569, 1121
Sau3AI GATC 8 cut(s) 43, 322, 628, 721, 763, 808, 883, 943
Sau96I GGNCC 5 cut(s) 75, 76, 400, 869, 1041
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 2 cut(s) 341, 1045
ScrFI CCNGG 3 cut(s) 128, 949, 950
SduI GDGCHC 5 cut(s) 79, 118, 171, 183, 955
SfaNI GCATC 2 cut(s) 880, 1132
SfcI CTRYAG 1 cut(s) 957
Sfr274I CTCGAG 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 400, 869, 1041
SlaI CTCGAG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 950
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 6 cut(s) 455, 500, 594, 682, 849, 1076
SsiI CCGC 9 cut(s) 34, 36, 96, 157, 171, 183, 186, 211, 571
SspI AATATT 1 cut(s) 557
SspMI CTAG 2 cut(s) 513, 1056
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 126, 947, 948
TaaI ACNGT 2 cut(s) 359, 497
TaiI ACGT 2 cut(s) 294, 721
TaqI TCGA 3 cut(s) 207, 587, 1162
TasI AATT 6 cut(s) 455, 500, 594, 682, 849, 1076
TatI WGTACW 3 cut(s) 281, 405, 937
TauI GCSGC 3 cut(s) 36, 98, 188
TfiI GAWTC 3 cut(s) 509, 574, 859
Tru1I TTAA 2 cut(s) 546, 878
Tru9I TTAA 2 cut(s) 546, 878
TscAI CASTG 3 cut(s) 502, 667, 1108
TseFI GTSAC 5 cut(s) 22, 287, 389, 491, 974
TseI GCWGC 3 cut(s) 145, 568, 1120
Tsp45I GTSAC 5 cut(s) 22, 287, 389, 491, 974
TspDTI ATGAA 2 cut(s) 467, 1014
TspMI CCCGGG 1 cut(s) 948
TspRI CASTG 3 cut(s) 502, 667, 1108
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 400, 869, 1041
XagI CCTNNNNNAGG 1 cut(s) 1094
XapI RAATTY 3 cut(s) 500, 594, 682
XceI RCATGY 1 cut(s) 288
XhoI CTCGAG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 948
XspI CTAG 2 cut(s) 513, 1056
ZrmI AGTACT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.