FvH4_4g26790

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009397
Physical Location & Seq
Reverse (-)
28038039 .. 28042487
4449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26790.t2

Sequence Viewer

Length: 1227 bp
ATGTTGGGGACGGGATTACAGGTGACGCGTGCTCGCGGCGAAGATCGATTTTACAATCCGGCCAGAGCGCGCAGGGCTCACCAGAACCAGAAGGCCGCCGAGCAACTCCGACGAGCTCAGAGCGACGTCACGTCCAGTCAATCGCATGCGATTAAAGGCAGCAGCAACCTGAACCGGGAACCGGAGAACCGGGCCGGGCCGGTTGAGCATCATCCCAAACCGGTGGCTGTTCCAGCTGGCGAGCCGGTGGTTAAGCCGTTGAGTAATCTCGAGCGGTTCTTGCAGTCCATTACGCCCTCAGTTCCTGCTCAGTATCTCTCTAAGACGACGATGAGAGGATTGAGTACATGTGACGTGGAGTTTCAGCCGTACTTTGTTCTTGGTGATCTGTGGGAGTCGTTCAAGGAGTGGAGTGCTTATGGTGCCGGAGTGCCGCTGATTTTGAACGATAGTGACTCTGTTGTTCAGTACTATGTTCCTTATTTATCCGGTATTCAAATATACGGCAACTCTATGAAGGTGTCCTCTAAGTCAAGGCGACCAGATGAGGATAGTGACAGTGATTTTAGGGATTCTAGTAGTGATGGTAGCTGTGATTCTGAATCGGATAAATATTTGAGGAAGCAGCGGAATCATCAAATGCTGTCTAGTGAAATTCCTCAAAGGTTAGAAAGAATAGCTCTGAGAGATCAGCATTATCCACTTCATGAGGACTGCTCTAGTGATGAGGGTGAACCTGTAAATTCACAAGGTTGCTTATTATTTGAGTATTTTGAACGTGATGTTCCTTATTGCCGTGAGCCTTTAGCTGATAAGATATTGGATCTTGCGTTTCGTTTTCCGGAGCTGAAGACAATAAGAAGTTGTGATCTACTGGCTTCCAGTTGGATTTCTGTTGCATGGTATCCAATTTACAGGATTCCAACAGGACCAACTTTAAAGGATCTTGATGCGTGCTTTCTGTCATACCATTCCCTTTTTACCCCTATGGGAGGTGTACAGGATCCCCGAGCTCCTGTAGTGACATATCCTAGTGATATGGATGGTATCCCTAAGATGTCATTGCCTGTATTTGGTCTTGCTTCATACAAGTTCAGAGGGTGCTTGTGGACTCCTAGTGGAGGATTGGAACGACAATTAGCGAACTCCCTCTTGCAGGCCACTGATGACTTTCTAAGGCTGCTTCAGGTCAATCATCCAGACTTTCTGTTCTTCAGCCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

409

Amino Acids

46.09

Weight (kDa)

6.03

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 88 - 274 1.6e-48 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 274
AccII CGCG 3 cut(s) 28, 36, 70
AccIII TCCGGA 1 cut(s) 841
AciI CCGC 5 cut(s) 36, 96, 274, 434, 628
AclWI GGATC 4 cut(s) 831, 951, 998, 1011
AcoI YGGCCR 1 cut(s) 60
AcsI RAATTY 2 cut(s) 654, 742
AcuI CTGAAG 3 cut(s) 869, 1169, 1198
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 4 cut(s) 346, 371, 470, 999
AfiI CCNNNNNNNGG 6 cut(s) 175, 181, 992, 1073, 1121, 1156
AflIII ACRYGT 2 cut(s) 26, 347
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 4 cut(s) 403, 445, 497, 776
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 2 cut(s) 132, 355
AluBI AGCT 7 cut(s) 116, 236, 591, 680, 809, 847, 1013
AluI AGCT 7 cut(s) 116, 236, 591, 680, 809, 847, 1013
Alw21I GWGCWC 3 cut(s) 34, 118, 1015
AlwI GGATC 4 cut(s) 831, 951, 998, 1011
AlwNI CAGNNNCTG 1 cut(s) 305
Ama87I CYCGRG 2 cut(s) 269, 1008
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 5 cut(s) 60, 93, 192, 197, 1158
ApeKI GCWGC 4 cut(s) 159, 162, 625, 1180
ApoI RAATTY 2 cut(s) 654, 742
AsiGI ACCGGT 1 cut(s) 220
AspLEI GCGC 2 cut(s) 70, 72
AspS9I GGNCC 3 cut(s) 192, 197, 929
AsuC2I CCSGG 3 cut(s) 176, 191, 196
AsuHPI GGTGA 4 cut(s) 34, 71, 395, 743
AvaI CYCGRG 2 cut(s) 269, 1008
AvaII GGWCC 1 cut(s) 929
BamHI GGATCC 1 cut(s) 1003
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 3 cut(s) 79, 118, 1015
BbsI GAAGAC 1 cut(s) 857
Bbv12I GWGCWC 3 cut(s) 34, 118, 1015
BbvI GCAGC 4 cut(s) 171, 174, 637, 1167
BccI CCATC 2 cut(s) 578, 1037
BceAI ACGGC 5 cut(s) 241, 352, 520, 780, 1203
BciVI GTATCC 2 cut(s) 915, 1058
BcnI CCSGG 3 cut(s) 176, 191, 196
BfaI CTAG 5 cut(s) 576, 648, 720, 1032, 1116
BfmI CTRYAG 1 cut(s) 1017
BfuI GTATCC 2 cut(s) 915, 1058
BisI GCNGC 7 cut(s) 37, 96, 160, 163, 434, 626, 1181
BlsI GCNGC 7 cut(s) 38, 97, 161, 164, 435, 627, 1182
BmcAI AGTACT 1 cut(s) 470
Bme1390I CCNGG 3 cut(s) 176, 191, 196
Bme18I GGWCC 1 cut(s) 929
BmeRI GACNNNNNGTC 1 cut(s) 130
BmeT110I CYCGRG 2 cut(s) 269, 1008
BmgBI CACGTC 2 cut(s) 132, 355
BmgT120I GGNCC 3 cut(s) 192, 197, 929
BmiI GGNNCC 3 cut(s) 180, 424, 1005
BmrFI CCNGG 3 cut(s) 176, 191, 196
BmsI GCATC 2 cut(s) 217, 940
BpiI GAAGAC 1 cut(s) 857
BplI GAGNNNNNCTC 2 cut(s) 701, 733
BpuMI CCSGG 3 cut(s) 176, 191, 196
Bsa29I ATCGAT 1 cut(s) 46
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 4 cut(s) 181, 220, 488, 841
Bsc4I CCNNNNNNNGG 6 cut(s) 175, 181, 992, 1073, 1121, 1156
Bse118I RCCGGY 3 cut(s) 199, 220, 244
Bse1I ACTGG 3 cut(s) 135, 879, 882
Bse3DI GCAATG 1 cut(s) 1061
BseAI TCCGGA 1 cut(s) 841
BseCI ATCGAT 1 cut(s) 46
BseGI GGATG 3 cut(s) 211, 1048, 1195
BseLI CCNNNNNNNGG 6 cut(s) 175, 181, 992, 1073, 1121, 1156
BseMI GCAATG 1 cut(s) 1061
BseMII CTCAG 4 cut(s) 131, 312, 323, 674
BseNI ACTGG 3 cut(s) 135, 879, 882
BsePI GCGCGC 1 cut(s) 68
BseXI GCAGC 4 cut(s) 171, 174, 637, 1167
Bsh1236I CGCG 3 cut(s) 28, 36, 70
BshFI GGCC 5 cut(s) 62, 95, 194, 199, 1160
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 220
BshVI ATCGAT 1 cut(s) 46
BsiHKAI GWGCWC 3 cut(s) 34, 118, 1015
BsiHKCI CYCGRG 2 cut(s) 269, 1008
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 6 cut(s) 175, 181, 992, 1073, 1121, 1156
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 5 cut(s) 62, 95, 194, 199, 1160
BsoBI CYCGRG 2 cut(s) 269, 1008
Bsp1286I GDGCHC 4 cut(s) 34, 79, 118, 1015
Bsp13I TCCGGA 1 cut(s) 841
Bsp1407I TGTACA 1 cut(s) 997
Bsp143I GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
BspACI CCGC 5 cut(s) 36, 96, 274, 434, 628
BspANI GGCC 5 cut(s) 62, 95, 194, 199, 1160
BspCNI CTCAG 4 cut(s) 130, 311, 322, 675
BspDI ATCGAT 1 cut(s) 46
BspEI TCCGGA 1 cut(s) 841
BspFNI CGCG 3 cut(s) 28, 36, 70
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 180, 424, 1005
BspPI GGATC 4 cut(s) 831, 951, 998, 1011
BspT107I GGYRCC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 1061
BsrFI RCCGGY 3 cut(s) 199, 220, 244
BsrGI TGTACA 1 cut(s) 997
BsrI ACTGG 3 cut(s) 135, 879, 882
BssAI RCCGGY 3 cut(s) 199, 220, 244
BssHII GCGCGC 1 cut(s) 68
BssMI GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 997
BstC8I GCNNGC 8 cut(s) 30, 34, 70, 147, 238, 242, 955, 1158
BstDEI CTNAG 8 cut(s) 117, 298, 309, 321, 528, 683, 1053, 1175
BstENI CCTNNNNNAGG 3 cut(s) 990, 1119, 1154
BstF5I GGATG 3 cut(s) 211, 1048, 1195
BstFNI CGCG 3 cut(s) 28, 36, 70
BstHHI GCGC 2 cut(s) 70, 72
BstKTI GATC 7 cut(s) 46, 388, 691, 826, 871, 946, 1006
BstMBI GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
BstMWI GCNNNNNNNGC 5 cut(s) 74, 205, 233, 280, 422
BstNSI RCATGY 2 cut(s) 149, 351
BstSCI CCNGG 3 cut(s) 174, 189, 194
BstSFI CTRYAG 1 cut(s) 1017
BstUI CGCG 3 cut(s) 28, 36, 70
BstV1I GCAGC 4 cut(s) 171, 174, 637, 1167
BstV2I GAAGAC 1 cut(s) 857
BstX2I RGATCY 3 cut(s) 823, 943, 1003
BstXI CCANNNNNNTGG 1 cut(s) 223
BstYI RGATCY 3 cut(s) 823, 943, 1003
Bsu15I ATCGAT 1 cut(s) 46
BsuI GTATCC 2 cut(s) 915, 1058
BsuRI GGCC 5 cut(s) 62, 95, 194, 199, 1160
BsuTUI ATCGAT 1 cut(s) 46
BtrI CACGTC 2 cut(s) 132, 355
BtsCI GGATG 3 cut(s) 211, 1048, 1195
BtsIMutI CAGTG 2 cut(s) 565, 1161
Cac8I GCNNGC 8 cut(s) 30, 34, 70, 147, 238, 242, 955, 1158
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 706
CfoI GCGC 2 cut(s) 70, 72
Cfr10I RCCGGY 3 cut(s) 199, 220, 244
Cfr13I GGNCC 3 cut(s) 192, 197, 929
ClaI ATCGAT 1 cut(s) 46
CseI GACGC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 345, 370, 469, 998
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 4 cut(s) 146, 348, 707, 900
CviQI GTAC 4 cut(s) 345, 370, 469, 998
DdeI CTNAG 8 cut(s) 117, 298, 309, 321, 528, 683, 1053, 1175
DpnI GATC 7 cut(s) 45, 387, 690, 825, 870, 945, 1005
DpnII GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
DraI TTTAAA 1 cut(s) 939
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 130
Ecl136II GAGCTC 2 cut(s) 116, 1013
Eco24I GRGCYC 3 cut(s) 79, 118, 1015
Eco47I GGWCC 1 cut(s) 929
Eco53kI GAGCTC 2 cut(s) 116, 1013
Eco57I CTGAAG 3 cut(s) 869, 1169, 1198
Eco88I CYCGRG 2 cut(s) 269, 1008
EcoICRI GAGCTC 2 cut(s) 116, 1013
EcoNI CCTNNNNNAGG 3 cut(s) 990, 1119, 1154
EcoT38I GRGCYC 3 cut(s) 79, 118, 1015
FaeI CATG 4 cut(s) 149, 351, 710, 903
FaqI GGGAC 1 cut(s) 22
FatI CATG 4 cut(s) 145, 347, 706, 899
Fnu4HI GCNGC 7 cut(s) 37, 96, 160, 163, 434, 626, 1181
FokI GGATG 3 cut(s) 198, 1055, 1182
FriOI GRGCYC 3 cut(s) 79, 118, 1015
Fsp4HI GCNGC 7 cut(s) 37, 96, 160, 163, 434, 626, 1181
FspBI CTAG 5 cut(s) 576, 648, 720, 1032, 1116
GlaI GCGC 2 cut(s) 69, 71
GluI GCNGC 7 cut(s) 37, 96, 160, 163, 434, 626, 1181
HaeIII GGCC 5 cut(s) 62, 95, 194, 199, 1160
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 70, 72
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 4 cut(s) 149, 351, 710, 903
Hin6I GCGC 2 cut(s) 68, 70
HinP1I GCGC 2 cut(s) 68, 70
HinfI GANTC 8 cut(s) 395, 455, 572, 596, 602, 631, 919, 1111
HphI GGTGA 4 cut(s) 34, 71, 395, 743
Hpy166II GTNNAC 3 cut(s) 734, 998, 1110
Hpy188I TCNGA 6 cut(s) 110, 120, 601, 607, 684, 1097
Hpy188III TCNNGA 5 cut(s) 269, 707, 842, 947, 1199
Hpy8I GTNNAC 3 cut(s) 734, 998, 1110
Hpy99I CGWCG 4 cut(s) 114, 128, 331, 1224
HpyAV CCTTC 2 cut(s) 85, 511
HpyCH4III ACNGT 1 cut(s) 560
HpyCH4IV ACGT 4 cut(s) 126, 131, 354, 778
HpyCH4V TGCA 3 cut(s) 283, 899, 1156
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 205, 233, 280, 422
HpyF3I CTNAG 8 cut(s) 117, 298, 309, 321, 528, 683, 1053, 1175
HpySE526I ACGT 4 cut(s) 126, 131, 354, 778
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 4 cut(s) 149, 351, 710, 903
HspAI GCGC 2 cut(s) 68, 70
Kpn2I TCCGGA 1 cut(s) 841
Kzo9I GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
LmnI GCTCC 2 cut(s) 844, 1018
Lsp1109I GCAGC 4 cut(s) 171, 174, 637, 1167
LweI GCATC 2 cut(s) 217, 940
MaeI CTAG 5 cut(s) 576, 648, 720, 1032, 1116
MaeII ACGT 4 cut(s) 126, 131, 354, 778
MaeIII GTNAC 6 cut(s) 22, 127, 350, 452, 554, 1021
MalI GATC 7 cut(s) 45, 387, 690, 825, 870, 945, 1005
MbiI CCGCTC 1 cut(s) 274
MboI GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
MboII GAAGA 3 cut(s) 53, 862, 1204
MflI RGATCY 3 cut(s) 823, 943, 1003
MhlI GDGCHC 4 cut(s) 34, 79, 118, 1015
MluCI AATT 4 cut(s) 654, 742, 909, 1136
MluI ACGCGT 1 cut(s) 26
MlyI GAGTC 3 cut(s) 404, 449, 1105
MmeI TCCRAC 3 cut(s) 133, 866, 947
MroI TCCGGA 1 cut(s) 841
MseI TTAA 3 cut(s) 153, 252, 938
MspA1I CMGCKG 3 cut(s) 236, 436, 628
MspR9I CCNGG 3 cut(s) 176, 191, 196
MvnI CGCG 3 cut(s) 28, 36, 70
MwoI GCNNNNNNNGC 5 cut(s) 74, 205, 233, 280, 422
NciI CCSGG 3 cut(s) 176, 191, 196
NdeII GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
NlaIII CATG 4 cut(s) 149, 351, 710, 903
NlaIV GGNNCC 3 cut(s) 180, 424, 1005
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 6 cut(s) 22, 127, 350, 452, 554, 1021
NspI RCATGY 2 cut(s) 149, 351
PaeI GCATGC 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 706
PauI GCGCGC 1 cut(s) 68
PciI ACATGT 1 cut(s) 347
PfeI GAWTC 5 cut(s) 572, 596, 602, 631, 919
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 7 cut(s) 38, 97, 161, 164, 435, 627, 1182
PleI GAGTC 3 cut(s) 403, 449, 1105
PpsI GAGTC 3 cut(s) 403, 449, 1105
PscI ACATGT 1 cut(s) 347
Psp124BI GAGCTC 2 cut(s) 118, 1015
PspN4I GGNNCC 3 cut(s) 180, 424, 1005
PspPI GGNCC 3 cut(s) 192, 197, 929
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 3 cut(s) 823, 943, 1003
PteI GCGCGC 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 4 cut(s) 346, 371, 470, 999
RsaNI GTAC 4 cut(s) 345, 370, 469, 998
SacI GAGCTC 2 cut(s) 118, 1015
SaqAI TTAA 3 cut(s) 153, 252, 938
SatI GCNGC 7 cut(s) 37, 96, 160, 163, 434, 626, 1181
Sau3AI GATC 7 cut(s) 43, 385, 688, 823, 868, 943, 1003
Sau96I GGNCC 3 cut(s) 192, 197, 929
ScaI AGTACT 1 cut(s) 470
SchI GAGTC 3 cut(s) 404, 449, 1105
ScrFI CCNGG 3 cut(s) 176, 191, 196
SduI GDGCHC 4 cut(s) 34, 79, 118, 1015
SfaNI GCATC 2 cut(s) 217, 940
SfcI CTRYAG 1 cut(s) 1017
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 1 cut(s) 929
SlaI CTCGAG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
SphI GCATGC 1 cut(s) 149
Sse9I AATT 4 cut(s) 654, 742, 909, 1136
SsiI CCGC 5 cut(s) 36, 96, 274, 434, 628
SspI AATATT 1 cut(s) 614
SspMI CTAG 5 cut(s) 576, 648, 720, 1032, 1116
SstI GAGCTC 2 cut(s) 118, 1015
StyD4I CCNGG 3 cut(s) 174, 189, 194
TaaI ACNGT 1 cut(s) 560
TaiI ACGT 4 cut(s) 129, 134, 357, 781
TaqI TCGA 3 cut(s) 46, 270, 1222
TasI AATT 4 cut(s) 654, 742, 909, 1136
TatI WGTACW 3 cut(s) 344, 468, 997
TauI GCSGC 3 cut(s) 39, 98, 436
TfiI GAWTC 5 cut(s) 572, 596, 602, 631, 919
Tru1I TTAA 3 cut(s) 153, 252, 938
Tru9I TTAA 3 cut(s) 153, 252, 938
TscAI CASTG 2 cut(s) 565, 1168
TseFI GTSAC 6 cut(s) 22, 127, 350, 452, 554, 1021
TseI GCWGC 4 cut(s) 159, 162, 625, 1180
Tsp45I GTSAC 6 cut(s) 22, 127, 350, 452, 554, 1021
TspDTI ATGAA 3 cut(s) 530, 695, 1074
TspRI CASTG 2 cut(s) 565, 1168
VpaK11BI GGWCC 1 cut(s) 929
XagI CCTNNNNNAGG 3 cut(s) 990, 1119, 1154
XapI RAATTY 2 cut(s) 654, 742
XceI RCATGY 2 cut(s) 149, 351
XhoI CTCGAG 1 cut(s) 269
XspI CTAG 5 cut(s) 576, 648, 720, 1032, 1116
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.