Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015398

Physical Location & Seq

Genomic Coordinates Forward (+)

332902 .. 334760

Gene Structure 1859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCCGATCAACGATCAGTTTCCTAGTGGGTTAAGAATACTCGTTGTAGACGATGATACTTCATGCTTGTTCATTCTCGAGAAAATGCTTCTCCGTCTCATGTACCAAGTTACAATTTGCTCACAAGCTGATGTTGCGTTAACCATTCTAAGAGAAAGAAAAGACAGTTTTGATTTGGTGCTAAGTGATGTTCATATGCCTGGTATGAATGGTTACAATCTTCTTCAACAAGTTGGTCTTCTTGAAATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAAGAACAACTACAGTCATGACTGGAATCAACCATGGAGCTTGTGATTATCTAATCAAACCTATTCGTCCTGAAGAGCTTAAGAACATTTGGCAACATGTTGTTAGAAGGAAATGTGTGATGAAGAAAGAGCTTCGAAGTTCTCAAGCTTTAGAGGATAACAAGAACAGTGGTAGCCTCGAGACTGTTGTTGTTTCGGTTAGTGAATGCTCAGAGGAAAGTTTGATGAAATGTAGGAATAAGAAGAAGAAGAAGAAGAGAAGTGTTGATAGAGATGATAATGAAGATGATCTTCTTCTTGATCCTGGAAACTCGAAGAAGTCACGCGTTGTTTGGTCTATTGAATTGCATCAACAATTCGTTAATGCCGTAAACAAACTTGGAATTGACAAAGCTGTACCAAAGCGGATTCTCGAGTTGATGAATGTTCCTGGTTTAAGCAGAGAAAACGTGGCTAGTCATTTACAGAAGTTCCGATTGTATTTGAAGAGATTAAGCGGTGAAGCTTCGCAGAGTAATGACTCTGAGTCTACCAAAAGATATGAAAACATTCAAGCTCTGGTTTCCTCAGGACAATTACATCCACAGACATTAGCTGCATTGTTTGGTCAACCAATAGACAATCATCACTCTGCTAGTTTTGGAGTTTGGATTCCTAATGACAATCTTGGTAGATCTCAAAATGAACACTTCTCGGTTGATGTATCATCCGCTTCTAACCGTCCTGTTTCTGTGGCGGTTCATGGTCTATCTTCCTCAGCAAATTTCAGACAGAGAGGTGACGTTAACAACAACAGAATCAGACAAGGGTATGGATCAAATGTCAATGAAGAATCTTGGATCTTGGAAAGATCTTCAAGACAAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

382

Amino Acids

43.1

Weight (kDa)

8.64

Isoelectric Point (pI)

54.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	51 - 150	1.8e-17	Response regulator receiver domain
Myb_DNA-binding	PF00249	230 - 279	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01760 AT2G01760 AT2G01760
fragaria_vesca	FvH4_4g33470
malus_domestica	MD13G1019800.v1.1 MD16G1017900.v1.1
prunus_persica	Prupe.1G334200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0442781
rosa_multiflora	Rmu_ssc0000204.1_g000021
rosa_roxburghii	Rroxscaffold_5G00383560
rosa_rugosa	Rorug04G0343000
rosa_samantha	Rh4AG395600 Rh4BG408300 Rh4CG424100 Rh4DG402500
rosa_wichuraiana	Rw4G034190

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 809
AccII	CGCG	1 cut(s)	606
AciI	CCGC	4 cut(s)	685, 777, 990, 1016
AclWI	GGATC	4 cut(s)	258, 575, 1102, 1127
AcsI	RAATTY	1 cut(s)	1042
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	2 cut(s)	104, 678
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	2 cut(s)	376, 604
AgsI	TTSAA	6 cut(s)	227, 245, 623, 766, 833, 1137
AhdI	GACNNNNNGTC	1 cut(s)	805
AjnI	CCWGG	3 cut(s)	199, 583, 709
AluBI	AGCT	9 cut(s)	128, 320, 358, 412, 428, 674, 785, 836, 875
AluI	AGCT	9 cut(s)	128, 320, 358, 412, 428, 674, 785, 836, 875
Alw26I	GTCTC	2 cut(s)	101, 455
AlwI	GGATC	4 cut(s)	258, 575, 1102, 1127
Ama87I	CYCGRG	3 cut(s)	77, 458, 692
ApeKI	GCWGC	1 cut(s)	875
ApoI	RAATTY	1 cut(s)	1042
Asp700I	GAANNNNTTC	1 cut(s)	828
AsuHPI	GGTGA	2 cut(s)	791, 1070
AsuII	TTCGAA	1 cut(s)	415
AvaI	CYCGRG	3 cut(s)	77, 458, 692
AxyI	CCTNAGG	1 cut(s)	847
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbsI	GAAGAC	1 cut(s)	230
BbvCI	CCTCAGC	1 cut(s)	1036
BbvI	GCAGC	1 cut(s)	862
BccI	CCATC	1 cut(s)	272
BceAI	ACGGC	1 cut(s)	632
BciT130I	CCWGG	3 cut(s)	201, 585, 711
BcoDI	GTCTC	2 cut(s)	101, 455
BfaI	CTAG	3 cut(s)	24, 735, 915
BfmI	CTRYAG	1 cut(s)	291
BfrI	CTTAAG	1 cut(s)	359
BglII	AGATCT	2 cut(s)	953, 1130
BisI	GCNGC	1 cut(s)	876
BlsI	GCNGC	1 cut(s)	877
Bme1390I	CCNGG	3 cut(s)	201, 585, 711
BmeRI	GACNNNNNGTC	1 cut(s)	805
BmeT110I	CYCGRG	3 cut(s)	77, 458, 692
BmrFI	CCNGG	3 cut(s)	201, 585, 711
BmsI	GCATC	1 cut(s)	637
BpiI	GAAGAC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	1036
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	313
Bse1I	ACTGG	1 cut(s)	307
Bse21I	CCTNAGG	1 cut(s)	847
BseBI	CCWGG	3 cut(s)	201, 585, 711
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	859, 986
BseMII	CTCAG	4 cut(s)	504, 795, 861, 1050
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	862
Bsh1236I	CGCG	1 cut(s)	606
BsiHKCI	CYCGRG	3 cut(s)	77, 458, 692
BsmAI	GTCTC	2 cut(s)	101, 455
BsmBI	CGTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	491
BsoBI	CYCGRG	3 cut(s)	77, 458, 692
Bsp119I	TTCGAA	1 cut(s)	415
Bsp143I	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	4 cut(s)	685, 777, 990, 1016
BspCNI	CTCAG	4 cut(s)	503, 796, 860, 1049
BspFNI	CGCG	1 cut(s)	606
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	4 cut(s)	258, 575, 1102, 1127
BspQI	GCTCTTC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	3 cut(s)	201, 585, 711
Bst4CI	ACNGT	5 cut(s)	167, 295, 449, 466, 1001
Bst6I	CTCTTC	3 cut(s)	348, 530, 761
BstAFI	CTTAAG	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	415
BstDEI	CTNAG	6 cut(s)	149, 182, 490, 804, 847, 1036
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	859, 986
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	9 cut(s)	9, 16, 253, 571, 583, 956, 1097, 1122, 1133
BstMAI	GTCTC	2 cut(s)	101, 455
BstMBI	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	3 cut(s)	201, 585, 711
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	199, 583, 709
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	1 cut(s)	862
BstV2I	GAAGAC	1 cut(s)	230
BstX2I	RGATCY	4 cut(s)	250, 953, 1119, 1130
BstYI	RGATCY	4 cut(s)	250, 953, 1119, 1130
Bsu36I	CCTNAGG	1 cut(s)	847
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	859, 986
BtsIMutI	CAGTG	1 cut(s)	454
CciI	TCATGA	1 cut(s)	297
Csp6I	GTAC	2 cut(s)	103, 677
CspCI	CAANNNNNGTGG	2 cut(s)	430, 465
CviAII	CATG	6 cut(s)	63, 100, 298, 314, 377, 1022
CviQI	GTAC	2 cut(s)	103, 677
DdeI	CTNAG	6 cut(s)	149, 182, 490, 804, 847, 1036
DpnI	GATC	9 cut(s)	8, 15, 252, 570, 582, 955, 1096, 1121, 1132
DpnII	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
DriI	GACNNNNNGTC	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	348, 530, 761
Eam1105I	GACNNNNNGTC	1 cut(s)	805
EarI	CTCTTC	3 cut(s)	348, 530, 761
Eco130I	CCWWGG	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	847
Eco88I	CYCGRG	3 cut(s)	77, 458, 692
EcoRII	CCWGG	3 cut(s)	199, 583, 709
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	6 cut(s)	66, 103, 301, 317, 380, 1025
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 555, 587
FatI	CATG	6 cut(s)	62, 99, 297, 313, 376, 1021
FauNDI	CATATG	1 cut(s)	195
FblI	GTMKAC	2 cut(s)	48, 809
Fnu4HI	GCNGC	1 cut(s)	876
FokI	GGATG	2 cut(s)	846, 973
Fsp4HI	GCNGC	1 cut(s)	876
FspBI	CTAG	3 cut(s)	24, 735, 915
GluI	GCNGC	1 cut(s)	876
Hin1II	CATG	6 cut(s)	66, 103, 301, 317, 380, 1025
HincII	GTYRAC	3 cut(s)	141, 890, 1066
HindII	GTYRAC	3 cut(s)	141, 890, 1066
HindIII	AAGCTT	2 cut(s)	426, 783
HinfI	GANTC	7 cut(s)	306, 688, 800, 806, 931, 1077, 1112
HpaI	GTTAAC	2 cut(s)	141, 1066
HphI	GGTGA	2 cut(s)	791, 1070
Hpy166II	GTNNAC	6 cut(s)	49, 141, 652, 810, 890, 1066
Hpy188I	TCNGA	5 cut(s)	493, 755, 805, 1049, 1082
Hpy8I	GTNNAC	6 cut(s)	49, 141, 652, 810, 890, 1066
HpyAV	CCTTC	1 cut(s)	381
HpyCH4III	ACNGT	5 cut(s)	167, 295, 449, 466, 1001
HpyCH4IV	ACGT	2 cut(s)	729, 1062
HpyCH4V	TGCA	2 cut(s)	628, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	6 cut(s)	149, 182, 490, 804, 847, 1036
HpySE526I	ACGT	2 cut(s)	729, 1062
Hsp92II	CATG	6 cut(s)	66, 103, 301, 317, 380, 1025
KspAI	GTTAAC	2 cut(s)	141, 1066
Kzo9I	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	317
Lsp1109I	GCAGC	1 cut(s)	862
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	3 cut(s)	24, 735, 915
MaeII	ACGT	2 cut(s)	729, 1062
MaeIII	GTNAC	4 cut(s)	109, 212, 600, 1058
MalI	GATC	9 cut(s)	8, 15, 252, 570, 582, 955, 1096, 1121, 1132
MboI	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
MflI	RGATCY	4 cut(s)	250, 953, 1119, 1130
MluCI	AATT	6 cut(s)	114, 623, 635, 663, 854, 1042
MluI	ACGCGT	1 cut(s)	604
MlyI	GAGTC	2 cut(s)	794, 815
MnlI	CCTC	6 cut(s)	427, 467, 487, 856, 1045, 1049
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	7 cut(s)	32, 140, 360, 642, 716, 773, 1065
MslI	CAYNNNNRTG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	359
MspR9I	CCNGG	3 cut(s)	201, 585, 711
Mva1269I	GAATGC	1 cut(s)	491
MvaI	CCWGG	3 cut(s)	201, 585, 711
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	313
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
NlaIII	CATG	6 cut(s)	66, 103, 301, 317, 380, 1025
NmuCI	GTSAC	2 cut(s)	600, 1058
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	415
PaeR7I	CTCGAG	3 cut(s)	77, 458, 692
PagI	TCATGA	1 cut(s)	297
PciI	ACATGT	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	348
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 645
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	5 cut(s)	306, 688, 931, 1077, 1112
PfoI	TCCNGGA	1 cut(s)	583
PkrI	GCNGC	1 cut(s)	877
PleI	GAGTC	2 cut(s)	794, 814
PpsI	GAGTC	2 cut(s)	794, 814
PscI	ACATGT	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	199, 583, 709
PspGI	CCWGG	3 cut(s)	199, 583, 709
PsuI	RGATCY	4 cut(s)	250, 953, 1119, 1130
RsaI	GTAC	2 cut(s)	104, 678
RsaNI	GTAC	2 cut(s)	103, 677
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	348
SaqAI	TTAA	7 cut(s)	32, 140, 360, 642, 716, 773, 1065
SatI	GCNGC	1 cut(s)	876
Sau3AI	GATC	9 cut(s)	6, 13, 250, 568, 580, 953, 1094, 1119, 1130
SchI	GAGTC	2 cut(s)	794, 815
ScrFI	CCNGG	3 cut(s)	201, 585, 711
SfaNI	GCATC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	291
Sfr274I	CTCGAG	3 cut(s)	77, 458, 692
SfuI	TTCGAA	1 cut(s)	415
SlaI	CTCGAG	3 cut(s)	77, 458, 692
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	5 cut(s)	77, 359, 423, 458, 692
SmoI	CTYRAG	5 cut(s)	77, 359, 423, 458, 692
Sse9I	AATT	6 cut(s)	114, 623, 635, 663, 854, 1042
SsiI	CCGC	4 cut(s)	685, 777, 990, 1016
SspMI	CTAG	3 cut(s)	24, 735, 915
StyD4I	CCNGG	3 cut(s)	199, 583, 709
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	5 cut(s)	167, 295, 449, 466, 1001
TaiI	ACGT	2 cut(s)	732, 1065
TaqI	TCGA	5 cut(s)	78, 415, 459, 593, 693
TasI	AATT	6 cut(s)	114, 623, 635, 663, 854, 1042
TfiI	GAWTC	5 cut(s)	306, 688, 931, 1077, 1112
Tru1I	TTAA	7 cut(s)	32, 140, 360, 642, 716, 773, 1065
Tru9I	TTAA	7 cut(s)	32, 140, 360, 642, 716, 773, 1065
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	600, 1058
TseI	GCWGC	1 cut(s)	875
Tsp45I	GTSAC	2 cut(s)	600, 1058
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	1 cut(s)	1042
XceI	RCATGY	1 cut(s)	380
XhoI	CTCGAG	3 cut(s)	77, 458, 692
XmiI	GTMKAC	2 cut(s)	48, 809
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	24, 735, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.