Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015398

Physical Location & Seq

Genomic Coordinates Reverse (-)

55810879 .. 55814587

Gene Structure 3709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG408300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1854 bp

ATGGCGGCGTTGCAGAGCGTGGTGCAGTCGTGCTTGAGCACCACCACCGCGAGTAGCTTCGGCTCGTGTAAAGGTGGAGGCGGGGCTTCGTCTGCTTCTGCTAATGTAATGGCGATTCACGATCAGTTTCCGGCGGGGTTGAGGGTTCTGGTGGTCGACGACGACACGACGTGCCTGGCGATTCTGGAGCAGATGCTTCGCCGGTGTCTCTACCAGGTAACACTTTGCTCCCAGGCTACTGATGCTTTGAATCATCTACGGGAGAAAAAAGGCTATTTTGATGTGGTATTGAGTGATGTTCATATGCCTGATATGGATGGATTTAAACTCCTGGAATGTATAGGGCTGGAAATGGATCTTCCTGTCATCATGATGTCTGCTGATGGGAGAACAAGTGCTGTTATGAAAGGAATCAGACATGGTGCTTGCGATTATTTAATTAAGCCTGTACGTGAGGAAGAGCTCAAGAATATCTGGCAGCATGTTGCTAGGAAAAAATTAAACGAAAATAAAGAAATTGAACATTCAGGGAGCTTGGAAGATAATGATAGGCATAAACGGGGAATTAATGATGTTGAATATACTTCTTCTGTTATTGAAGGAACAGAAGGAACAGCGAGAACGAGAAGTCAGAAGAAAAGGAGCAGTGGTAAAGAAGATGAAGATGGTGATATGGAAAATGATGATATGTCTACATCAAAGAAACCCCGTGTAGTGTGGTCAGTTGAACTCCATCAGCAATTTGTCAGTGCTGTTAATCAACTTGGGCTTGATAAATCAAATGTGAAATTGGTTTCACATGGGAATAGATTTGACATCCAAGCTTTGGCTGCCTCTGGACAAATTCCTCCACAAACACTTGCAGCCCTGCAAGCTGAGCTTCTAGGTCAACCTGTAGGAAACCCTGGGTCAACAATAGATCAACCTGCTATTTTACATGCATCCTTGCAGAGACCAAAGCGTGCCCCTGTAGATCATGGTGTGGCATTTGGGCAGCCTTTGATAAAACGCCAATCTAACGTTTCTGTACACTTTCCACAATGTATCATATCTGCTGAGGATGCATCTGCAGGTGGACCATGGCGGTCTAATAGTCTTGGTACCGTGGCACCAAACAGCAATCTTGGAGGGTTTAGCACTCAAAATAGCAACGTGTTCATGGATACGTTGCAGCAGGAGCGAAGACCACAGCCAAAAAGACATCAGCAGTCTTTGCTAACTGAACCTGTTCGTACTATTAATGTACAGCCATCTTGCCTTGTGGTTCCCTTGCAGTCATCAGCTAGTTTCCAGGCTGGAAATAGTCCTGCTTCTGTCAATCAGAGTTGTAGCTTTAACAGGTCCGCTGCTATTGATTACAGTCTCCTTTCAACTCAATCTAATAATAATTCCTCATTGAATATCGGACGGATATCAAATGGACATCATAAAACTCCTGGCATTCTTAGTGGGTACTCAGCCACTGGTTCCTTATCTACTCCATCTTCTTCTGTAATTGCTGAAAGTAGCATCAGTCCCCAAAACTCAGCTGTGACATATAGTGTTGCTCGACAATTGACTGGGCGGTTGCATAATACGTCAAACATCCAGGATTTATATGTTCCTAAATCAGGGGAAATGCTTGATCAGGGCGCTTATAGGAATCTCGGATTTGTTGGTAAGGAGACTCGGATTCCAAGTCGATTTGATGAGTTTGAATCGCAAAGCAACTTGAACCATGGAAACATCCATGCCGAGAACATTGGTAATCCAGTCAAGCAGGAGCCAAATATGGGTTTTGTGGATAATGCAAAAGGCTCCCCAATTTTTCAACAGTTCTCTTCAAGTGATCTCATGAGTGTTTTCAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

617

Amino Acids

66.82

Weight (kDa)

6.32

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	49 - 157	9.4e-24	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01760 AT2G01760 AT2G01760
fragaria_vesca	FvH4_4g33470
malus_domestica	MD13G1019800.v1.1 MD16G1017900.v1.1
prunus_persica	Prupe.1G334200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0442781
rosa_multiflora	Rmu_ssc0000204.1_g000021
rosa_roxburghii	Rroxscaffold_5G00383560
rosa_rugosa	Rorug04G0343000
rosa_samantha	Rh4AG395600 Rh4BG408300 Rh4CG424100 Rh4DG402500
rosa_wichuraiana	Rw4G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1061
Acc36I	ACCTGC	2 cut(s)	934, 1061
Acc65I	GGTACC	1 cut(s)	1100
AccB1I	GGYRCC	2 cut(s)	1100, 1108
AccB7I	CCANNNNNTGG	1 cut(s)	826
AccI	GTMKAC	2 cut(s)	156, 692
AccII	CGCG	1 cut(s)	50
AciI	CCGC	7 cut(s)	5, 48, 81, 134, 1084, 1344, 1564
AclI	AACGTT	1 cut(s)	1020
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	843
AdeI	CACNNNGTG	1 cut(s)	171
AfaI	GTAC	6 cut(s)	450, 1029, 1102, 1234, 1245, 1454
AfiI	CCNNNNNNNGG	3 cut(s)	826, 1610, 1772
AflIII	ACRYGT	1 cut(s)	1152
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
AluBI	AGCT	9 cut(s)	57, 463, 534, 824, 875, 880, 1283, 1332, 1529
AluI	AGCT	9 cut(s)	57, 463, 534, 824, 875, 880, 1283, 1332, 1529
Alw21I	GWGCWC	2 cut(s)	41, 465
Alw26I	GTCTC	4 cut(s)	212, 946, 1367, 1658
AlwI	GGATC	1 cut(s)	363
AlwNI	CAGNNNCTG	1 cut(s)	1463
ApeKI	GCWGC	6 cut(s)	478, 830, 863, 994, 1171, 1346
ApoI	RAATTY	1 cut(s)	843
AseI	ATTAAT	2 cut(s)	567, 1239
Asp700I	GAANNNNTTC	1 cut(s)	1227
Asp718I	GGTACC	1 cut(s)	1100
AspLEI	GCGC	1 cut(s)	1634
AspS9I	GGNCC	2 cut(s)	1076, 1341
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	1076, 1341
BaeGI	GKGCMC	1 cut(s)	967
BanI	GGYRCC	2 cut(s)	1100, 1108
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	1189
Bbv12I	GWGCWC	2 cut(s)	41, 465
BbvCI	CCTCAGC	1 cut(s)	1056
BbvI	GCAGC	6 cut(s)	490, 817, 875, 1006, 1183, 1333
BccI	CCATC	6 cut(s)	311, 377, 659, 741, 1258, 1489
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
BciVI	GTATCC	1 cut(s)	1156
BclI	TGATCA	1 cut(s)	1624
BcoDI	GTCTC	4 cut(s)	212, 946, 1367, 1658
BfaI	CTAG	3 cut(s)	489, 884, 1284
BfmI	CTRYAG	3 cut(s)	894, 969, 1068
BfoI	RGCGCY	1 cut(s)	1635
BfuAI	ACCTGC	2 cut(s)	934, 1061
BfuI	GTATCC	1 cut(s)	1156
BisI	GCNGC	7 cut(s)	6, 479, 831, 864, 995, 1172, 1347
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	7 cut(s)	7, 480, 832, 865, 996, 1173, 1348
Bme1390I	CCNGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
Bme18I	GGWCC	2 cut(s)	1076, 1341
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	1076, 1341
BmiI	GGNNCC	6 cut(s)	1102, 1110, 1266, 1468, 1764, 1798
BmrFI	CCNGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
BmrI	ACTGGG	1 cut(s)	1569
BmsI	GCATC	6 cut(s)	183, 232, 950, 1051, 1073, 1518
BmuI	ACTGGG	1 cut(s)	1569
BpiI	GAAGAC	1 cut(s)	1189
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	1056
Bpu1102I	GCTNAGC	1 cut(s)	876
BpuEI	CTTGAG	2 cut(s)	55, 449
BsaAI	YACGTR	1 cut(s)	452
BsaI	GGTCTC	1 cut(s)	946
BsaJI	CCNNGG	6 cut(s)	231, 904, 905, 1079, 1104, 1717
BsaXI	ACNNNNNCTCC	4 cut(s)	379, 409, 634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	826, 1610, 1772
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	1468, 1564, 1751
BseBI	CCWGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
BseDI	CCNNGG	6 cut(s)	231, 904, 905, 1079, 1104, 1717
BseGI	GGATG	6 cut(s)	322, 816, 941, 1066, 1584, 1725
BseLI	CCNNNNNNNGG	3 cut(s)	826, 1610, 1772
BseMII	CTCAG	4 cut(s)	867, 1047, 1470, 1539
BseNI	ACTGG	3 cut(s)	1468, 1564, 1751
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	6 cut(s)	490, 817, 875, 1006, 1183, 1333
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	1100, 1108
BsiHKAI	GWGCWC	2 cut(s)	41, 465
BsiSI	CCGG	2 cut(s)	131, 202
BslFI	GGGAC	1 cut(s)	1500
BslI	CCNNNNNNNGG	3 cut(s)	826, 1610, 1772
BsmAI	GTCTC	4 cut(s)	212, 946, 1367, 1658
BsmFI	GGGAC	1 cut(s)	1500
BsmI	GAATGC	1 cut(s)	1440
Bso31I	GGTCTC	1 cut(s)	946
Bsp1286I	GDGCHC	3 cut(s)	41, 465, 967
Bsp1407I	TGTACA	2 cut(s)	1027, 1243
Bsp143I	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
Bsp1720I	GCTNAGC	1 cut(s)	876
Bsp19I	CCATGG	2 cut(s)	1079, 1717
BspACI	CCGC	7 cut(s)	5, 48, 81, 134, 1084, 1344, 1564
BspCNI	CTCAG	4 cut(s)	868, 1048, 1469, 1538
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	2 cut(s)	369, 1833
BspLI	GGNNCC	6 cut(s)	1102, 1110, 1266, 1468, 1764, 1798
BspMAI	CTGCAG	1 cut(s)	1072
BspMI	ACCTGC	2 cut(s)	934, 1061
BspPI	GGATC	1 cut(s)	363
BspQI	GCTCTTC	1 cut(s)	453
BspT107I	GGYRCC	2 cut(s)	1100, 1108
BspTNI	GGTCTC	1 cut(s)	946
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	2 cut(s)	1027, 1243
BsrI	ACTGG	3 cut(s)	1468, 1564, 1751
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	6 cut(s)	231, 904, 905, 1079, 1104, 1717
BssMI	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
BssSI	CACGAG	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	1079, 1717
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
Bst4CI	ACNGT	3 cut(s)	1105, 1361, 1815
Bst6I	CTCTTC	2 cut(s)	453, 1825
BstAPI	GCANNNNNTGC	1 cut(s)	1213
BstAUI	TGTACA	2 cut(s)	1027, 1243
BstBAI	YACGTR	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	427, 873, 963
BstDEI	CTNAG	5 cut(s)	876, 1056, 1445, 1456, 1525
BstDSI	CCRYGG	3 cut(s)	1079, 1104, 1717
BstENI	CCTNNNNNAGG	1 cut(s)	1608
BstF5I	GGATG	6 cut(s)	322, 816, 941, 1066, 1584, 1725
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	1635
BstHHI	GCGC	1 cut(s)	1634
BstKTI	GATC	6 cut(s)	124, 358, 922, 976, 1627, 1831
BstMAI	GTCTC	4 cut(s)	212, 946, 1367, 1658
BstMBI	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
BstMWI	GCNNNNNNNGC	8 cut(s)	92, 242, 830, 872, 877, 1061, 1177, 1213
BstNI	CCWGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
BstNSI	RCATGY	2 cut(s)	485, 941
BstSCI	CCNGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
BstSFI	CTRYAG	3 cut(s)	894, 969, 1068
BstSLI	GKGCMC	1 cut(s)	967
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	490, 817, 875, 1006, 1183, 1333
BstV2I	GAAGAC	1 cut(s)	1189
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	1156
BtgI	CCRYGG	3 cut(s)	1079, 1104, 1717
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	6 cut(s)	322, 816, 941, 1066, 1584, 1725
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	3 cut(s)	652, 754, 1461
BveI	ACCTGC	2 cut(s)	934, 1061
Cac8I	GCNNGC	3 cut(s)	427, 873, 963
CaiI	CAGNNNCTG	1 cut(s)	1463
CciI	TCATGA	2 cut(s)	369, 1833
CfoI	GCGC	1 cut(s)	1634
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	1076, 1341
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	6 cut(s)	449, 1028, 1101, 1233, 1244, 1453
CviQI	GTAC	6 cut(s)	449, 1028, 1101, 1233, 1244, 1453
DdeI	CTNAG	5 cut(s)	876, 1056, 1445, 1456, 1525
DpnI	GATC	6 cut(s)	123, 357, 921, 975, 1626, 1830
DpnII	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
DraI	TTTAAA	1 cut(s)	325
DraIII	CACNNNGTG	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	453, 1825
EarI	CTCTTC	2 cut(s)	453, 1825
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	2 cut(s)	1079, 1717
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	946
Eco32I	GATATC	1 cut(s)	1413
Eco47I	GGWCC	2 cut(s)	1076, 1341
Eco53kI	GAGCTC	1 cut(s)	463
EcoICRI	GAGCTC	1 cut(s)	463
EcoNI	CCTNNNNNAGG	1 cut(s)	1608
EcoRII	CCWGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
EcoRV	GATATC	1 cut(s)	1413
EcoT14I	CCWWGG	2 cut(s)	1079, 1717
EcoT22I	ATGCAT	2 cut(s)	943, 1066
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	2 cut(s)	1079, 1717
FalI	AAGNNNNNCTT	2 cut(s)	864, 896
FaqI	GGGAC	1 cut(s)	1500
FauI	CCCGC	2 cut(s)	74, 127
FauNDI	CATATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	1624
FblI	GTMKAC	2 cut(s)	156, 692
Fnu4HI	GCNGC	7 cut(s)	6, 479, 831, 864, 995, 1172, 1347
FokI	GGATG	6 cut(s)	329, 803, 928, 1073, 1571, 1712
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	7 cut(s)	6, 479, 831, 864, 995, 1172, 1347
FspBI	CTAG	3 cut(s)	489, 884, 1284
GlaI	GCGC	1 cut(s)	1633
GluI	GCNGC	7 cut(s)	6, 479, 831, 864, 995, 1172, 1347
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	1635
HapII	CCGG	2 cut(s)	131, 202
HhaI	GCGC	1 cut(s)	1634
Hin6I	GCGC	1 cut(s)	1632
HinP1I	GCGC	1 cut(s)	1632
HincII	GTYRAC	3 cut(s)	157, 890, 912
HindII	GTYRAC	3 cut(s)	157, 890, 912
HindIII	AAGCTT	1 cut(s)	822
HinfI	GANTC	8 cut(s)	115, 181, 250, 411, 1642, 1666, 1672, 1697
HpaII	CCGG	2 cut(s)	131, 202
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	6 cut(s)	157, 693, 890, 912, 1030, 1076
Hpy188I	TCNGA	6 cut(s)	416, 633, 1323, 1406, 1649, 1671
Hpy188III	TCNNGA	6 cut(s)	119, 185, 370, 466, 837, 1834
Hpy8I	GTNNAC	6 cut(s)	157, 693, 890, 912, 1030, 1076
Hpy99I	CGWCG	3 cut(s)	161, 164, 172
HpyAV	CCTTC	2 cut(s)	593, 602
HpyCH4III	ACNGT	3 cut(s)	1105, 1361, 1815
HpyCH4IV	ACGT	6 cut(s)	170, 451, 1020, 1152, 1166, 1577
HpyF10VI	GCNNNNNNNGC	8 cut(s)	92, 242, 830, 872, 877, 1061, 1177, 1213
HpyF3I	CTNAG	5 cut(s)	876, 1056, 1445, 1456, 1525
HpySE526I	ACGT	6 cut(s)	170, 451, 1020, 1152, 1166, 1577
HspAI	GCGC	1 cut(s)	1632
KpnI	GGTACC	1 cut(s)	1104
Ksp22I	TGATCA	1 cut(s)	1624
Kzo9I	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	7 cut(s)	187, 233, 531, 642, 1177, 1762, 1802
Lsp1109I	GCAGC	6 cut(s)	490, 817, 875, 1006, 1183, 1333
LweI	GCATC	6 cut(s)	183, 232, 950, 1051, 1073, 1518
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	3 cut(s)	489, 884, 1284
MaeII	ACGT	6 cut(s)	170, 451, 1020, 1152, 1166, 1577
MaeIII	GTNAC	2 cut(s)	217, 1531
MalI	GATC	6 cut(s)	123, 357, 921, 975, 1626, 1830
MboI	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
MfeI	CAATTG	1 cut(s)	1553
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	3 cut(s)	41, 465, 967
MlyI	GAGTC	1 cut(s)	1660
MnlI	CCTC	8 cut(s)	71, 135, 448, 844, 858, 1051, 1121, 1402
Mph1103I	ATGCAT	2 cut(s)	943, 1066
MroXI	GAANNNNTTC	1 cut(s)	1227
MseI	TTAA	8 cut(s)	324, 437, 441, 500, 567, 756, 1239, 1335
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	2 cut(s)	1346, 1529
MspI	CCGG	2 cut(s)	131, 202
MspR9I	CCNGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
MunI	CAATTG	1 cut(s)	1553
Mva1269I	GAATGC	1 cut(s)	1440
MvaI	CCWGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	8 cut(s)	92, 242, 830, 872, 877, 1061, 1177, 1213
NcoI	CCATGG	2 cut(s)	1079, 1717
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
NlaIV	GGNNCC	6 cut(s)	1102, 1110, 1266, 1468, 1764, 1798
NmeAIII	GCCGAG	1 cut(s)	1759
NmuCI	GTSAC	1 cut(s)	1531
NsiI	ATGCAT	2 cut(s)	943, 1066
NspI	RCATGY	2 cut(s)	485, 941
PacI	TTAATTAA	1 cut(s)	441
PagI	TCATGA	2 cut(s)	369, 1833
PaqCI	CACCTGC	1 cut(s)	1061
PasI	CCCWGGG	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	1440
PdmI	GAANNNNTTC	1 cut(s)	1227
PfeI	GAWTC	7 cut(s)	115, 181, 250, 411, 1642, 1672, 1697
PflMI	CCANNNNNTGG	1 cut(s)	826
PfoI	TCCNGGA	2 cut(s)	330, 1587
PkrI	GCNGC	7 cut(s)	7, 480, 832, 865, 996, 1173, 1348
PleI	GAGTC	1 cut(s)	1660
PpsI	GAGTC	1 cut(s)	1660
Ppu21I	YACGTR	1 cut(s)	452
PshBI	ATTAAT	2 cut(s)	567, 1239
Psp124BI	GAGCTC	1 cut(s)	465
Psp1406I	AACGTT	1 cut(s)	1020
Psp6I	CCWGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
PspGI	CCWGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
PspN4I	GGNNCC	6 cut(s)	1102, 1110, 1266, 1468, 1764, 1798
PspPI	GGNCC	2 cut(s)	1076, 1341
PstI	CTGCAG	1 cut(s)	1072
PstNI	CAGNNNCTG	1 cut(s)	1463
PsuI	RGATCY	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	1529
RsaI	GTAC	6 cut(s)	450, 1029, 1102, 1234, 1245, 1454
RsaNI	GTAC	6 cut(s)	449, 1028, 1101, 1233, 1244, 1453
RseI	CAYNNNNRTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	453
SaqAI	TTAA	8 cut(s)	324, 437, 441, 500, 567, 756, 1239, 1335
SatI	GCNGC	7 cut(s)	6, 479, 831, 864, 995, 1172, 1347
Sau3AI	GATC	6 cut(s)	121, 355, 919, 973, 1624, 1828
Sau96I	GGNCC	2 cut(s)	1076, 1341
SchI	GAGTC	1 cut(s)	1660
ScrFI	CCNGG	8 cut(s)	176, 215, 233, 332, 906, 1292, 1437, 1589
SduI	GDGCHC	3 cut(s)	41, 465, 967
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	6 cut(s)	183, 232, 950, 1051, 1073, 1518
SfcI	CTRYAG	3 cut(s)	894, 969, 1068
SgrAI	CRCCGGYG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	1076, 1341
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	2 cut(s)	34, 464
SmoI	CTYRAG	2 cut(s)	34, 464
SsiI	CCGC	7 cut(s)	5, 48, 81, 134, 1084, 1344, 1564
SspMI	CTAG	3 cut(s)	489, 884, 1284
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	8 cut(s)	174, 213, 231, 330, 904, 1290, 1435, 1587
StyI	CCWWGG	2 cut(s)	1079, 1717
TaaI	ACNGT	3 cut(s)	1105, 1361, 1815
TaiI	ACGT	6 cut(s)	173, 454, 1023, 1155, 1169, 1580
TaqI	TCGA	3 cut(s)	156, 1549, 1681
TatI	WGTACW	2 cut(s)	1027, 1243
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	7 cut(s)	115, 181, 250, 411, 1642, 1672, 1697
Tru1I	TTAA	8 cut(s)	324, 437, 441, 500, 567, 756, 1239, 1335
Tru9I	TTAA	8 cut(s)	324, 437, 441, 500, 567, 756, 1239, 1335
TscAI	CASTG	3 cut(s)	652, 754, 1468
TseFI	GTSAC	1 cut(s)	1531
TseI	GCWGC	6 cut(s)	478, 830, 863, 994, 1171, 1346
Tsp45I	GTSAC	1 cut(s)	1531
TspDTI	ATGAA	4 cut(s)	290, 419, 675, 1147
TspGWI	ACGGA	1 cut(s)	1423
TspRI	CASTG	3 cut(s)	652, 754, 1468
Van91I	CCANNNNNTGG	1 cut(s)	826
VpaK11BI	GGWCC	2 cut(s)	1076, 1341
VspI	ATTAAT	2 cut(s)	567, 1239
XagI	CCTNNNNNAGG	1 cut(s)	1608
XapI	RAATTY	1 cut(s)	843
XceI	RCATGY	2 cut(s)	485, 941
XmiI	GTMKAC	2 cut(s)	156, 692
XmnI	GAANNNNTTC	1 cut(s)	1227
XspI	CTAG	3 cut(s)	489, 884, 1284
Zsp2I	ATGCAT	2 cut(s)	943, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.