Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0015398

Physical Location & Seq

Genomic Coordinates Reverse (-)

1305300 .. 1309682

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1017900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGGCTGCTTTGCAGAGAGTGGCGCAGTCCAGCGTGAGCACTACTGCGAGTAGTTACGGTTCGTGTAAAGGTGGTGGTGGTGTTTTGTCACCGTCTGCCGTTGAAATGGCAGTTCCTGATCGGTTTCCAGCAGGCTTGAGGGTTCTAGTGGTCGACGACGACACAACGTGCTTGAGGATTCTTGAGCTGATGCTCCTCCGGTGTCTCTACCAGGTTACCACCTGTTCCGAGGCTACTGTTGCTTTGAATCTTCTACGAGAGAGGAAAGATTGTTTTGATGTGGTACTGAGTGATGTCCATATGCCTGATATGGATGGATTTAAACTCCTGGAACACATTGGTCTGGAAATGGACCTTCCTGTTATCATGATGTCTGCTGATGGGAGAACAAGCGTTGTTATGAGAGGAATTAGACATGGGGCCTGTGATTTTTTAATTAAGCCTGTACGTGAGGCAGAACTCAAGAATATTTGGCAGCATGTTGTTAGGAAAAAATGGAATGGAAGTAAAGAACTTGAACATTCTGGGAGCTTGGAAGATAATGATCCACATAAACGAGGAAACAATGATATTGAATACACATCTTCTGTTAACGAAGGATCAGAAGTTTCATTGAAAGGTCAGAAGAAGAGGATCAATGCTAAAGAAGATGATGATGGTGATACAGAAAACGATGATATGTCTACATCGAAGAAACCTCGTGTAGTATGGTCAGTAGAACTCCATCAGCAATTTGTCACTGCTGTGAACCAGCTTGGGCTTGATAAGGCTGTACCAAAGAGAATTCTTGAAATGATGAATGTACCCGGTTTAACTCGAGAAAATGTTGCTAGCCATCTGCAGAAATTCAGGTTATATTTGAAGAGATTAAATGGAGTAGCTCAACAACAAAGTGGGATTGCAAATGCTTTTTGTGGTCCCGCAGACTCAAATGGGAAGTTGGGGTCGCTTAGTAGATTTGACTTCCAAACTTTGGCTACCTCTGGACAAATTCCTCCACAAACACTAGCCGCCCTGCAAGCTGAGCTTTTAGGTCAACCTGCAGGGAACCTCGTGCCAGCAATGGATCAGCCTGCTCTTCTACATGCATCCCTACAAGGAGCCAAGCATCCCCCTGTTGAACATGGTGTGCCATTTGTGCAGCCTTTTATAAAAAGCCAATCAAATGTTTCCAAACAGTTTCCACAACCCGTCATTTCTGCTGAGGATGTATCTCCAGGATTTGGACAATGGAGGTCTAATAATTGTAGTACAGTGGCACCCAGCAACTATCATGGAGGGTCGAGTGTTCAGAATAGTAACTTCTTGATGGGCGTTGTGCAGCAGGAGCAAAGGCAACATGATCGAACGCAGCAGCAGTCTGCACTAATCGAACCTTGCCGTTCGTTTAATGTGCAGCCATCTTGCCTTGTGGTCCCCTCTCAATCATCAACTGGTTTCCAGGCTGGAAATAGTCCTGCTTCTTTCAATCAGAGTAGTAGCTTTAACAAGTCTACTGTTATTGATTACAGTCTGCTCTCGGATCAATCTAATAATTCCTTGAATATTGGACATATACCAACTGGAAATCTTAAAATTACCAGCACGCTTGGTGGGTACTCTGCCCCAGGTTCTATTTCTCCCACTTCTTGCATACTTAATACTGACAACAATAGCACCAGTTACCAGAATTCAGCTGCGACATTTAGTGATTCCAGAGAGTTGCCGGGGGTTTTGCATAATACGTCAAACAGCCAGGGTTTTTATGTTGATAAATCAGGGGAAATGCTTGATCAGGGACCCCTTAGGAATCTTGGATTTGTTGGTAAAGAGACTTGCATTCCAAGTCGATTTGCAGTGGATGATTTTGAATCGCAAATGAGCAACTTGAACCGTGGAAGAATCCAGGTGGAGAACAGTGGTGCCCTAGTCAAGCAGGAGCCAATTGTGGATTATGTGGATAACGAAAAACTAGGCATCCCAATATTGCAGCAATATTCTTCAAGTGATTTCATGAGCGTATATTTTGTGGTTAGCCGATGTCTCTTGATTTCCATGACGCGTACAGATTGTTTCACATTATCAAAATGTTCAGTAGAGATTGCAGTTGAAGTATGTGTCTTATTTCTACGTTTAGATCTAATTGACGTGCCTGCACCGGACTCAGGTGCAGAGCGGCCTCTTGCATCCGAGACTCTTGAAAAATTGAGGACAAATGTGGGGGAGTATCAGTGTCGGTCCGGAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

744

Amino Acids

80.92

Weight (kDa)

5.75

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	48 - 156	2.9e-22	Response regulator receiver domain
Myb_DNA-binding	PF00249	234 - 283	1.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01760 AT2G01760 AT2G01760
fragaria_vesca	FvH4_4g33470
malus_domestica	MD13G1019800.v1.1 MD16G1017900.v1.1
prunus_persica	Prupe.1G334200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0442781
rosa_multiflora	Rmu_ssc0000204.1_g000021
rosa_roxburghii	Rroxscaffold_5G00383560
rosa_rugosa	Rorug04G0343000
rosa_samantha	Rh4AG395600 Rh4BG408300 Rh4CG424100 Rh4DG402500
rosa_wichuraiana	Rw4G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1151
Acc36I	ACCTGC	1 cut(s)	1048
AccB1I	GGYRCC	2 cut(s)	1258, 1901
AccB7I	CCANNNNNTGG	2 cut(s)	973, 1223
AccBSI	CCGCTC	1 cut(s)	2155
AccI	GTMKAC	3 cut(s)	153, 683, 1493
AccII	CGCG	1 cut(s)	2041
AccIII	TCCGGA	1 cut(s)	2219
AciI	CCGC	3 cut(s)	921, 1011, 2155
AclWI	GGATC	5 cut(s)	539, 607, 641, 1074, 1530
AcsI	RAATTY	4 cut(s)	783, 845, 990, 1669
AdeI	CACNNNGTG	1 cut(s)	168
AfaI	GTAC	7 cut(s)	285, 447, 774, 804, 1252, 1598, 2044
AfiI	CCNNNNNNNGG	3 cut(s)	973, 1223, 2144
AflIII	ACRYGT	1 cut(s)	2039
AjiI	CACGTC	1 cut(s)	2128
AjnI	CCWGG	7 cut(s)	210, 327, 1216, 1440, 1606, 1734, 1884
AleI	CACNNNNGTG	1 cut(s)	743
AluBI	AGCT	8 cut(s)	187, 531, 754, 881, 1022, 1027, 1482, 1676
AluI	AGCT	8 cut(s)	187, 531, 754, 881, 1022, 1027, 1482, 1676
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	4 cut(s)	209, 1805, 2027, 2165
AlwI	GGATC	5 cut(s)	539, 607, 641, 1074, 1530
AlwNI	CAGNNNCTG	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	816
Aor13HI	TCCGGA	1 cut(s)	2219
AoxI	GGCC	2 cut(s)	420, 2156
ApeKI	GCWGC	9 cut(s)	5, 475, 1141, 1321, 1351, 1354, 1396, 1676, 1969
ApoI	RAATTY	4 cut(s)	783, 845, 990, 1669
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	6 cut(s)	352, 420, 917, 1414, 1778, 2217
AsuC2I	CCSGG	2 cut(s)	807, 1707
AsuHPI	GGTGA	2 cut(s)	81, 671
AsuNHI	GCTAGC	1 cut(s)	830
AvaI	CYCGRG	1 cut(s)	816
AvaII	GGWCC	5 cut(s)	352, 917, 1414, 1778, 2217
AxyI	CCTNAGG	1 cut(s)	1784
BaeGI	GKGCMC	1 cut(s)	1906
BanI	GGYRCC	2 cut(s)	1258, 1901
BauI	CACGAG	2 cut(s)	699, 1052
Bbv12I	GWGCWC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	1203
BbvI	GCAGC	8 cut(s)	487, 1153, 1333, 1363, 1366, 1408, 1663, 1981
BccI	CCATC	7 cut(s)	308, 374, 650, 732, 843, 1303, 1408
BceAI	ACGGC	2 cut(s)	83, 1365
BcgI	CGANNNNNNTGC	2 cut(s)	1325, 1359
BciT130I	CCWGG	7 cut(s)	212, 329, 1218, 1442, 1608, 1736, 1886
BclI	TGATCA	1 cut(s)	1771
BcnI	CCSGG	2 cut(s)	807, 1707
BcoDI	GTCTC	4 cut(s)	209, 1805, 2027, 2165
BfaI	CTAG	5 cut(s)	146, 831, 1007, 1907, 1952
BfmI	CTRYAG	2 cut(s)	839, 1041
BfuAI	ACCTGC	1 cut(s)	1048
BglII	AGATCT	1 cut(s)	2116
BlpI	GCTNAGC	1 cut(s)	1023
Bme1390I	CCNGG	9 cut(s)	212, 329, 807, 1218, 1442, 1608, 1707, 1736, 1886
Bme18I	GGWCC	5 cut(s)	352, 917, 1414, 1778, 2217
BmeT110I	CYCGRG	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	2128
BmgT120I	GGNCC	6 cut(s)	352, 420, 917, 1414, 1778, 2217
BmrFI	CCNGG	9 cut(s)	212, 329, 807, 1218, 1442, 1608, 1707, 1736, 1886
BmsI	GCATC	5 cut(s)	180, 1097, 1117, 1965, 2174
BmtI	GCTAGC	1 cut(s)	834
BpmI	CTGGAG	1 cut(s)	1200
Bpu10I	CCTNAGC	1 cut(s)	1203
Bpu1102I	GCTNAGC	1 cut(s)	1023
BpuEI	CTTGAG	4 cut(s)	157, 193, 203, 446
BpuMI	CCSGG	2 cut(s)	807, 1707
BsaAI	YACGTR	1 cut(s)	449
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	5 cut(s)	228, 1606, 1706, 1735, 1873
BsaWI	WCCGGW	3 cut(s)	198, 2137, 2219
BsaXI	ACNNNNNCTCC	2 cut(s)	2195, 2225
Bsc4I	CCNNNNNNNGG	3 cut(s)	973, 1223, 2144
Bse1I	ACTGG	3 cut(s)	1438, 1567, 1659
Bse21I	CCTNAGG	1 cut(s)	1784
Bse3DI	GCAATG	1 cut(s)	1068
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	2219
BseBI	CCWGG	7 cut(s)	212, 329, 1218, 1442, 1608, 1736, 1886
BseDI	CCNNGG	5 cut(s)	228, 1606, 1706, 1735, 1873
BseGI	GGATG	7 cut(s)	319, 1088, 1108, 1213, 1846, 1956, 2165
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	973, 1223, 2144
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	4 cut(s)	278, 1014, 1194, 2157
BseNI	ACTGG	3 cut(s)	1438, 1567, 1659
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	1906
BseXI	GCAGC	8 cut(s)	487, 1153, 1333, 1363, 1366, 1408, 1663, 1981
BseYI	CCCAGC	1 cut(s)	1262
BsgI	GTGCAG	6 cut(s)	1160, 1340, 1347, 1415, 2118, 2169
Bsh1236I	CGCG	1 cut(s)	2041
BshFI	GGCC	2 cut(s)	422, 2158
BshNI	GGYRCC	2 cut(s)	1258, 1901
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	5 cut(s)	199, 807, 1706, 2138, 2220
BslFI	GGGAC	3 cut(s)	903, 1400, 1791
BslI	CCNNNNNNNGG	3 cut(s)	973, 1223, 2144
BsmAI	GTCTC	4 cut(s)	209, 1805, 2027, 2165
BsmFI	GGGAC	3 cut(s)	903, 1400, 1791
BsmI	GAATGC	1 cut(s)	1818
BsnI	GGCC	2 cut(s)	422, 2158
BsoBI	CYCGRG	1 cut(s)	816
Bsp1286I	GDGCHC	2 cut(s)	41, 1906
Bsp13I	TCCGGA	1 cut(s)	2219
Bsp143I	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
Bsp1720I	GCTNAGC	1 cut(s)	1023
BspACI	CCGC	3 cut(s)	921, 1011, 2155
BspANI	GGCC	2 cut(s)	422, 2158
BspCNI	CTCAG	4 cut(s)	279, 1015, 1195, 2156
BspEI	TCCGGA	1 cut(s)	2219
BspFNI	CGCG	1 cut(s)	2041
BspHI	TCATGA	2 cut(s)	366, 1992
BspMAI	CTGCAG	2 cut(s)	843, 1045
BspMI	ACCTGC	1 cut(s)	1048
BspOI	GCTAGC	1 cut(s)	834
BspPI	GGATC	5 cut(s)	539, 607, 641, 1074, 1530
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	2 cut(s)	1258, 1901
BsrBI	CCGCTC	1 cut(s)	2155
BsrDI	GCAATG	1 cut(s)	1068
BsrI	ACTGG	3 cut(s)	1438, 1567, 1659
BssECI	CCNNGG	5 cut(s)	228, 1606, 1706, 1735, 1873
BssMI	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
BssSI	CACGAG	2 cut(s)	699, 1052
Bst2BI	CACGAG	2 cut(s)	699, 1052
Bst2UI	CCWGG	7 cut(s)	212, 329, 1218, 1442, 1608, 1736, 1886
Bst4CI	ACNGT	9 cut(s)	59, 93, 238, 1179, 1255, 1498, 1511, 1874, 1898
Bst6I	CTCTTC	3 cut(s)	623, 857, 1083
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	7 cut(s)	133, 832, 1020, 1059, 1074, 1586, 2133
BstDEI	CTNAG	6 cut(s)	287, 950, 1023, 1203, 1784, 2143
BstDSI	CCRYGG	1 cut(s)	1873
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	7 cut(s)	319, 1088, 1108, 1213, 1846, 1956, 2165
BstFNI	CGCG	1 cut(s)	2041
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	9 cut(s)	121, 547, 602, 636, 1069, 1345, 1525, 1774, 2119
BstMAI	GTCTC	4 cut(s)	209, 1805, 2027, 2165
BstMBI	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 1019, 1024, 1138, 1327
BstNI	CCWGG	7 cut(s)	212, 329, 1218, 1442, 1608, 1736, 1886
BstNSI	RCATGY	2 cut(s)	482, 1088
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	9 cut(s)	210, 327, 805, 1216, 1440, 1606, 1705, 1734, 1884
BstSFI	CTRYAG	2 cut(s)	839, 1041
BstSLI	GKGCMC	1 cut(s)	1906
BstUI	CGCG	1 cut(s)	2041
BstV1I	GCAGC	8 cut(s)	487, 1153, 1333, 1363, 1366, 1408, 1663, 1981
BstX2I	RGATCY	1 cut(s)	2116
BstYI	RGATCY	1 cut(s)	2116
Bsu36I	CCTNAGG	1 cut(s)	1784
BsuRI	GGCC	2 cut(s)	422, 2158
BtgI	CCRYGG	1 cut(s)	1873
BtrI	CACGTC	1 cut(s)	2128
BtsCI	GGATG	7 cut(s)	319, 1088, 1108, 1213, 1846, 1956, 2165
BtsI	GCAGTG	2 cut(s)	738, 1842
BtsIMutI	CAGTG	5 cut(s)	738, 1260, 1842, 1903, 2216
BveI	ACCTGC	1 cut(s)	1048
Cac8I	GCNNGC	7 cut(s)	133, 832, 1020, 1059, 1074, 1586, 2133
CaiI	CAGNNNCTG	1 cut(s)	116
CciI	TCATGA	2 cut(s)	366, 1992
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	6 cut(s)	352, 420, 917, 1414, 1778, 2217
CpoI	CGGWCCG	1 cut(s)	2217
CseI	GACGC	1 cut(s)	2047
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	7 cut(s)	284, 446, 773, 803, 1251, 1597, 2043
CspI	CGGWCCG	1 cut(s)	2217
CviAII	CATG	9 cut(s)	367, 416, 479, 1085, 1124, 1274, 1340, 1993, 2035
CviQI	GTAC	7 cut(s)	284, 446, 773, 803, 1251, 1597, 2043
DdeI	CTNAG	6 cut(s)	287, 950, 1023, 1203, 1784, 2143
DpnI	GATC	9 cut(s)	120, 546, 601, 635, 1068, 1344, 1524, 1773, 2118
DpnII	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
DraI	TTTAAA	1 cut(s)	322
DraIII	CACNNNGTG	1 cut(s)	168
Eam1104I	CTCTTC	3 cut(s)	623, 857, 1083
EarI	CTCTTC	3 cut(s)	623, 857, 1083
Eco47I	GGWCC	5 cut(s)	352, 917, 1414, 1778, 2217
Eco81I	CCTNAGG	1 cut(s)	1784
Eco88I	CYCGRG	1 cut(s)	816
Eco91I	GGTNACC	1 cut(s)	214
EcoO109I	RGGNCCY	2 cut(s)	420, 1778
EcoO65I	GGTNACC	1 cut(s)	214
EcoRI	GAATTC	2 cut(s)	783, 1669
EcoRII	CCWGG	7 cut(s)	210, 327, 1216, 1440, 1606, 1734, 1884
EcoT22I	ATGCAT	1 cut(s)	1090
FaeI	CATG	9 cut(s)	370, 419, 482, 1088, 1127, 1277, 1343, 1996, 2038
FalI	AAGNNNNNCTT	2 cut(s)	1011, 1043
FaqI	GGGAC	3 cut(s)	903, 1400, 1791
FatI	CATG	9 cut(s)	366, 415, 478, 1084, 1123, 1273, 1339, 1992, 2034
FauI	CCCGC	1 cut(s)	928
FauNDI	CATATG	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	1771
FblI	GTMKAC	3 cut(s)	153, 683, 1493
FokI	GGATG	7 cut(s)	326, 1075, 1095, 1220, 1853, 1943, 2152
FspBI	CTAG	5 cut(s)	146, 831, 1007, 1907, 1952
GlaI	GCGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	1266
GsuI	CTGGAG	1 cut(s)	1200
HaeIII	GGCC	2 cut(s)	422, 2158
HapII	CCGG	5 cut(s)	199, 807, 1706, 2138, 2220
HgaI	GACGC	1 cut(s)	2047
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	9 cut(s)	370, 419, 482, 1088, 1127, 1277, 1343, 1996, 2038
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	3 cut(s)	154, 592, 1037
HindII	GTYRAC	3 cut(s)	154, 592, 1037
HinfI	GANTC	9 cut(s)	178, 247, 926, 1691, 1789, 1850, 1881, 2141, 2173
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	5 cut(s)	199, 807, 1706, 2138, 2220
HphI	GGTGA	2 cut(s)	81, 671
Hpy166II	GTNNAC	6 cut(s)	154, 592, 684, 748, 1037, 1494
Hpy188I	TCNGA	7 cut(s)	229, 604, 624, 1293, 1473, 1522, 2170
Hpy8I	GTNNAC	6 cut(s)	154, 592, 684, 748, 1037, 1494
Hpy99I	CGWCG	2 cut(s)	158, 161
HpyAV	CCTTC	2 cut(s)	365, 590
HpyCH4III	ACNGT	9 cut(s)	59, 93, 238, 1179, 1255, 1498, 1511, 1874, 1898
HpyCH4IV	ACGT	5 cut(s)	167, 448, 1724, 2110, 2127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 1019, 1024, 1138, 1327
HpyF3I	CTNAG	6 cut(s)	287, 950, 1023, 1203, 1784, 2143
HpySE526I	ACGT	5 cut(s)	167, 448, 1724, 2110, 2127
Hsp92II	CATG	9 cut(s)	370, 419, 482, 1088, 1127, 1277, 1343, 1996, 2038
HspAI	GCGC	1 cut(s)	23
KflI	GGGWCCC	1 cut(s)	1778
Kpn2I	TCCGGA	1 cut(s)	2219
Ksp22I	TGATCA	1 cut(s)	1771
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	5 cut(s)	198, 528, 1100, 1327, 1918
Lsp1109I	GCAGC	8 cut(s)	487, 1153, 1333, 1363, 1366, 1408, 1663, 1981
LweI	GCATC	5 cut(s)	180, 1097, 1117, 1965, 2174
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	5 cut(s)	146, 831, 1007, 1907, 1952
MaeII	ACGT	5 cut(s)	167, 448, 1724, 2110, 2127
MaeIII	GTNAC	6 cut(s)	53, 87, 214, 736, 1298, 1661
MalI	GATC	9 cut(s)	120, 546, 601, 635, 1068, 1344, 1524, 1773, 2118
MbiI	CCGCTC	1 cut(s)	2155
MboI	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
MfeI	CAATTG	1 cut(s)	1923
MflI	RGATCY	1 cut(s)	2116
MhlI	GDGCHC	2 cut(s)	41, 1906
MluI	ACGCGT	1 cut(s)	2039
MlyI	GAGTC	3 cut(s)	920, 2135, 2167
Mph1103I	ATGCAT	1 cut(s)	1090
MroI	TCCGGA	1 cut(s)	2219
MslI	CAYNNNNRTG	1 cut(s)	743
MspA1I	CMGCKG	1 cut(s)	1676
MspI	CCGG	5 cut(s)	199, 807, 1706, 2138, 2220
MspR9I	CCNGG	9 cut(s)	212, 329, 807, 1218, 1442, 1608, 1707, 1736, 1886
MunI	CAATTG	1 cut(s)	1923
Mva1269I	GAATGC	1 cut(s)	1818
MvaI	CCWGG	7 cut(s)	212, 329, 1218, 1442, 1608, 1736, 1886
MvnI	CGCG	1 cut(s)	2041
MwoI	GCNNNNNNNGC	5 cut(s)	239, 1019, 1024, 1138, 1327
NciI	CCSGG	2 cut(s)	807, 1707
NdeI	CATATG	1 cut(s)	300
NdeII	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
NheI	GCTAGC	1 cut(s)	830
NlaIII	CATG	9 cut(s)	370, 419, 482, 1088, 1127, 1277, 1343, 1996, 2038
NmuCI	GTSAC	2 cut(s)	87, 736
NsiI	ATGCAT	1 cut(s)	1090
NspI	RCATGY	2 cut(s)	482, 1088
OliI	CACNNNNGTG	1 cut(s)	743
PacI	TTAATTAA	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	816
PagI	TCATGA	2 cut(s)	366, 1992
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	1 cut(s)	1818
PfeI	GAWTC	6 cut(s)	178, 247, 1691, 1789, 1850, 1881
PflMI	CCANNNNNTGG	2 cut(s)	973, 1223
PfoI	TCCNGGA	2 cut(s)	327, 1216
PleI	GAGTC	3 cut(s)	920, 2135, 2167
PpsI	GAGTC	3 cut(s)	920, 2135, 2167
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	1778
PsiI	TTATAA	1 cut(s)	1151
Psp5II	RGGWCCY	1 cut(s)	1778
Psp6I	CCWGG	7 cut(s)	210, 327, 1216, 1440, 1606, 1734, 1884
PspEI	GGTNACC	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	1262
PspGI	CCWGG	7 cut(s)	210, 327, 1216, 1440, 1606, 1734, 1884
PspPI	GGNCC	6 cut(s)	352, 420, 917, 1414, 1778, 2217
PspPPI	RGGWCCY	1 cut(s)	1778
PsrI	GAACNNNNNNTAC	2 cut(s)	43, 75
PstI	CTGCAG	2 cut(s)	843, 1045
PstNI	CAGNNNCTG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	2116
PvuII	CAGCTG	1 cut(s)	1676
RsaI	GTAC	7 cut(s)	285, 447, 774, 804, 1252, 1598, 2044
RsaNI	GTAC	7 cut(s)	284, 446, 773, 803, 1251, 1597, 2043
RseI	CAYNNNNRTG	1 cut(s)	743
Rsr2I	CGGWCCG	1 cut(s)	2217
RsrII	CGGWCCG	1 cut(s)	2217
SalI	GTCGAC	1 cut(s)	152
SapI	GCTCTTC	1 cut(s)	1083
Sau3AI	GATC	9 cut(s)	118, 544, 599, 633, 1066, 1342, 1522, 1771, 2116
Sau96I	GGNCC	6 cut(s)	352, 420, 917, 1414, 1778, 2217
SbfI	CCTGCAGG	1 cut(s)	1045
SchI	GAGTC	3 cut(s)	920, 2135, 2167
ScrFI	CCNGG	9 cut(s)	212, 329, 807, 1218, 1442, 1608, 1707, 1736, 1886
SdaI	CCTGCAGG	1 cut(s)	1045
SduI	GDGCHC	2 cut(s)	41, 1906
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	5 cut(s)	180, 1097, 1117, 1965, 2174
SfcI	CTRYAG	2 cut(s)	839, 1041
Sfr274I	CTCGAG	1 cut(s)	816
SinI	GGWCC	5 cut(s)	352, 917, 1414, 1778, 2217
SlaI	CTCGAG	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	743
SmlI	CTYRAG	5 cut(s)	136, 172, 182, 461, 816
SmoI	CTYRAG	5 cut(s)	136, 172, 182, 461, 816
Sse8387I	CCTGCAGG	1 cut(s)	1045
SsiI	CCGC	3 cut(s)	921, 1011, 2155
SspI	AATATT	4 cut(s)	469, 1546, 1965, 1976
SspMI	CTAG	5 cut(s)	146, 831, 1007, 1907, 1952
StyD4I	CCNGG	9 cut(s)	210, 327, 805, 1216, 1440, 1606, 1705, 1734, 1884
TaaI	ACNGT	9 cut(s)	59, 93, 238, 1179, 1255, 1498, 1511, 1874, 1898
TaiI	ACGT	5 cut(s)	170, 451, 1727, 2113, 2130
TaqI	TCGA	7 cut(s)	153, 689, 817, 1283, 1345, 1371, 1828
TaqII	GACCGA	1 cut(s)	2205
TatI	WGTACW	1 cut(s)	1250
TauI	GCSGC	2 cut(s)	1013, 2158
TfiI	GAWTC	6 cut(s)	178, 247, 1691, 1789, 1850, 1881
TscAI	CASTG	5 cut(s)	745, 1260, 1842, 1903, 2216
TseFI	GTSAC	2 cut(s)	87, 736
TseI	GCWGC	9 cut(s)	5, 475, 1141, 1321, 1351, 1354, 1396, 1676, 1969
Tsp45I	GTSAC	2 cut(s)	87, 736
TspDTI	ATGAA	3 cut(s)	600, 812, 1981
TspRI	CASTG	5 cut(s)	745, 1260, 1842, 1903, 2216
Van91I	CCANNNNNTGG	2 cut(s)	973, 1223
VpaK11BI	GGWCC	5 cut(s)	352, 917, 1414, 1778, 2217
XapI	RAATTY	4 cut(s)	783, 845, 990, 1669
XceI	RCATGY	2 cut(s)	482, 1088
XhoI	CTCGAG	1 cut(s)	816
XmiI	GTMKAC	3 cut(s)	153, 683, 1493
XspI	CTAG	5 cut(s)	146, 831, 1007, 1907, 1952
Zsp2I	ATGCAT	1 cut(s)	1090

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.