Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015398

Physical Location & Seq

Genomic Coordinates Reverse (-)

63174058 .. 63177784

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00383560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGCGGCGTTGCAGAGCGTGGTGCAGTCTTGCTTGAGCACCACCACCGCGAGTAGCTTCGGCTCGTGTAAAGGTGGAGGCGGGGCTTCGTCTGCTTCTGCTAATGTAATGGCGGTTCACGATCAGTTTCCGGCGGGGTTGAGGGTTCTGGTGGTCGACGACGACACGACGTGCCTGGCGATTCTGGAGCAGATGCTTCGCCGGTGTCTCTACCAGGTGATGTCTGCTGATGGGAGAACAAGTGCTGTTATGAAAGGAATCAGACATGGTGCTTGCGATTATTTAATTAAGCCTGTACGTGAGGAAGAGCTCAAAGAATATCTGGCAGCATGGAGCTTGGAAGATAATGACAGGCATAAACGGGGAATTAATGATGTTGAGTATACTTCTTCTGTTATTGAAGGAACAGAAGGAACAGCGAGAACGAGAAGTCAGAAGAAAAGGAGCAGTGGTAAAGAAGATGAAGATGGTGATATGGAAAATGATGATATGTCTACATCAAAGAAACCCCGTGTAGTGTGGTCAGTTGAACTCCATCAGCAATTTGTCAGTGCTGTTAACCAACTTGGGCTTGATAAGGCCGTACCAAAGAGAATCCTTGAATTGATGAATGTACCTGGTTTAAGTAGAGAAAATGTTGCAAGCCATCTGCAGAGTTGTTCATTTGGGCTCTTTAATGTGCAGAAATTCAGGTTATATTTGAAGAGATTAAGCGTAGAGCAACAACAAAGTGCAAATGCTTTCTGTGGGCCTGTAGAATCAAATGTGAAATTGGTTTCGCATGGGAATAGATTTGACATCCAAGCTTTGGCTGCCGCTGGACAAATTCCTCCACAAACACTTGCAGCCCTGCAAGCTGAGCTTCTAGGTCAACCTGTAGGAAACCCTGGGTCAACAATAGATCAATCTGCTATTTTACATGCATCCTTGCAGAGACCAAAGCGTGCCCCTGTAGATCATGGTGTGGCATTTGGGCAGCCTTTGATAAAACGCCAATCTAACGTTTCTGTACACTTTCCACAATGTATCATATCTGCTGAGGATGCATCTGCAGGTGGACCATGGCGGTCTAATAGTCTTGGTACCGTGGCGCCGAACAGCAATCTTGGAGGGTTTAGCACTCAGAATAGCAACGTGTTCATGGATACGTTGCAGCAGGAGCAAAGACCACAGCCAAAAAGACATCAGCAGTCTTTGCTAACTGAACCTGTTCGTACTATTAATGTACAGCCATCTTGCCTTGTGGTTCCTTCGCAGTCATCAGCTAGTTTCCAGGCTGGAAATAGTCCAGCTTCTGTCAATCAGAGTTGTAGCTTTAACAGGTCCGCTGCTATTGATTACAGTCTCCTTTCAGCTCAATCTAATAATAATTCCTCATTGAATATCGGACGGATATCAAATGGACATCATAAAACTCCCGGCATTCTTAGTGGGTACTCAGCCACTGGTCCATCTTCTTCTGTAATTGCTGAAAGTAGCATCAGTCCCCAAAACTCAGCTGTGACATATAGTGATGCTCGACAATTGACTGGGCGGGGGGAAATGCTTGATCAGGGCGCTTATAGGAATCTTGGATTTGTTGGTAAAGAGACTCGGATTCCAAGTCGATTTGATGAGTTTGAATCGCAAAGCAACTTGATCCATGGAAACATCCATGCCGAGAACATTGGTAATCCAGTCAAGCAGGAGCCAAATATTGGTTTTGTGGATAATGGAAAAGGCTCCCCAATTTTTCAACAGTTCTCTTCAAGTGATCTCATGAGTGTTTTCAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

592

Amino Acids

63.79

Weight (kDa)

6.71

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	171 - 219	6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015398)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01760 AT2G01760 AT2G01760
fragaria_vesca	FvH4_4g33470
malus_domestica	MD13G1019800.v1.1 MD16G1017900.v1.1
prunus_persica	Prupe.1G334200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0442781
rosa_multiflora	Rmu_ssc0000204.1_g000021
rosa_roxburghii	Rroxscaffold_5G00383560
rosa_rugosa	Rorug04G0343000
rosa_samantha	Rh4AG395600 Rh4BG408300 Rh4CG424100 Rh4DG402500
rosa_wichuraiana	Rw4G034190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1043
Acc36I	ACCTGC	1 cut(s)	1043
Acc65I	GGTACC	1 cut(s)	1082
AccB1I	GGYRCC	2 cut(s)	1082, 1090
AccB7I	CCANNNNNTGG	2 cut(s)	808, 1697
AccI	GTMKAC	3 cut(s)	156, 383, 494
AccII	CGCG	1 cut(s)	50
AciI	CCGC	9 cut(s)	5, 48, 81, 113, 134, 816, 1066, 1326, 1534
AclI	AACGTT	1 cut(s)	1002
AclWI	GGATC	1 cut(s)	1633
AcsI	RAATTY	2 cut(s)	686, 825
AcyI	GRCGYC	1 cut(s)	1091
AdeI	CACNNNGTG	1 cut(s)	171
AfaI	GTAC	8 cut(s)	297, 585, 615, 1011, 1084, 1216, 1227, 1436
AfiI	CCNNNNNNNGG	2 cut(s)	808, 1697
AflIII	ACRYGT	1 cut(s)	1134
AgsI	TTSAA	9 cut(s)	401, 530, 602, 703, 1381, 1622, 1736, 1749, 1771
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	5 cut(s)	174, 213, 616, 886, 1272
Alw21I	GWGCWC	2 cut(s)	41, 312
Alw26I	GTCTC	4 cut(s)	212, 928, 1349, 1583
AlwI	GGATC	1 cut(s)	1633
AlwNI	CAGNNNCTG	2 cut(s)	1295, 1445
AoxI	GGCC	2 cut(s)	579, 749
ApeKI	GCWGC	6 cut(s)	326, 812, 845, 976, 1153, 1328
ApoI	RAATTY	2 cut(s)	686, 825
AseI	ATTAAT	2 cut(s)	369, 1221
Asp700I	GAANNNNTTC	1 cut(s)	1209
Asp718I	GGTACC	1 cut(s)	1082
AspLEI	GCGC	2 cut(s)	1093, 1559
AspS9I	GGNCC	4 cut(s)	749, 1058, 1323, 1448
AsuC2I	CCSGG	1 cut(s)	1419
AsuHPI	GGTGA	2 cut(s)	229, 482
AvaII	GGWCC	3 cut(s)	1058, 1323, 1448
BaeGI	GKGCMC	1 cut(s)	949
BanI	GGYRCC	2 cut(s)	1082, 1090
BanII	GRGCYC	2 cut(s)	312, 672
BauI	CACGAG	1 cut(s)	64
Bbv12I	GWGCWC	2 cut(s)	41, 312
BbvCI	CCTCAGC	1 cut(s)	1038
BbvI	GCAGC	6 cut(s)	338, 799, 857, 988, 1165, 1315
BccI	CCATC	6 cut(s)	224, 461, 543, 654, 1240, 1459
BceAI	ACGGC	1 cut(s)	566
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	5 cut(s)	176, 215, 618, 888, 1274
BciVI	GTATCC	1 cut(s)	1138
BclI	TGATCA	1 cut(s)	1549
BcnI	CCSGG	1 cut(s)	1419
BcoDI	GTCTC	4 cut(s)	212, 928, 1349, 1583
BfaI	CTAG	2 cut(s)	866, 1266
BfmI	CTRYAG	5 cut(s)	650, 753, 876, 951, 1050
BfoI	RGCGCY	2 cut(s)	1094, 1560
BfuAI	ACCTGC	1 cut(s)	1043
BfuI	GTATCC	1 cut(s)	1138
BisI	GCNGC	8 cut(s)	6, 327, 813, 816, 846, 977, 1154, 1329
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	8 cut(s)	7, 328, 814, 817, 847, 978, 1155, 1330
Bme1390I	CCNGG	6 cut(s)	176, 215, 618, 888, 1274, 1419
Bme18I	GGWCC	3 cut(s)	1058, 1323, 1448
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	4 cut(s)	749, 1058, 1323, 1448
BmiI	GGNNCC	5 cut(s)	1084, 1092, 1248, 1689, 1723
BmrFI	CCNGG	6 cut(s)	176, 215, 618, 888, 1274, 1419
BmrI	ACTGGG	1 cut(s)	1539
BmsI	GCATC	6 cut(s)	183, 932, 1033, 1055, 1488, 1504
BmuI	ACTGGG	1 cut(s)	1539
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	1038
Bpu1102I	GCTNAGC	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	1419
BsaAI	YACGTR	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	1091
BsaI	GGTCTC	1 cut(s)	928
BsaJI	CCNNGG	5 cut(s)	886, 887, 1061, 1086, 1642
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 436, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 1697
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	1450, 1534, 1676
BseBI	CCWGG	5 cut(s)	176, 215, 618, 888, 1274
BseDI	CCNNGG	5 cut(s)	886, 887, 1061, 1086, 1642
BseGI	GGATG	4 cut(s)	798, 923, 1048, 1650
BseLI	CCNNNNNNNGG	2 cut(s)	808, 1697
BseMII	CTCAG	5 cut(s)	849, 1029, 1136, 1452, 1509
BseNI	ACTGG	3 cut(s)	1450, 1534, 1676
BseSI	GKGCMC	1 cut(s)	949
BseXI	GCAGC	6 cut(s)	338, 799, 857, 988, 1165, 1315
BsgI	GTGCAG	2 cut(s)	44, 701
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	2 cut(s)	581, 751
BshNI	GGYRCC	2 cut(s)	1082, 1090
BsiHKAI	GWGCWC	2 cut(s)	41, 312
BsiSI	CCGG	3 cut(s)	131, 202, 1419
BslFI	GGGAC	1 cut(s)	1470
BslI	CCNNNNNNNGG	2 cut(s)	808, 1697
BsmAI	GTCTC	4 cut(s)	212, 928, 1349, 1583
BsmFI	GGGAC	1 cut(s)	1470
BsmI	GAATGC	1 cut(s)	1422
BsnI	GGCC	2 cut(s)	581, 751
Bso31I	GGTCTC	1 cut(s)	928
Bsp1286I	GDGCHC	4 cut(s)	41, 312, 672, 949
Bsp1407I	TGTACA	2 cut(s)	1009, 1225
Bsp143I	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
Bsp1720I	GCTNAGC	1 cut(s)	858
Bsp19I	CCATGG	2 cut(s)	1061, 1642
BspACI	CCGC	9 cut(s)	5, 48, 81, 113, 134, 816, 1066, 1326, 1534
BspANI	GGCC	2 cut(s)	581, 751
BspCNI	CTCAG	5 cut(s)	850, 1030, 1135, 1451, 1508
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	1758
BspLI	GGNNCC	5 cut(s)	1084, 1092, 1248, 1689, 1723
BspMAI	CTGCAG	2 cut(s)	654, 1054
BspMI	ACCTGC	1 cut(s)	1043
BspPI	GGATC	1 cut(s)	1633
BspQI	GCTCTTC	1 cut(s)	300
BspT107I	GGYRCC	2 cut(s)	1082, 1090
BspTNI	GGTCTC	1 cut(s)	928
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	2 cut(s)	1009, 1225
BsrI	ACTGG	3 cut(s)	1450, 1534, 1676
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	5 cut(s)	886, 887, 1061, 1086, 1642
BssMI	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
BssNAI	GTATAC	1 cut(s)	384
BssNI	GRCGYC	1 cut(s)	1091
BssSI	CACGAG	1 cut(s)	64
BssT1I	CCWWGG	2 cut(s)	1061, 1642
Bst1107I	GTATAC	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	64
Bst2UI	CCWGG	5 cut(s)	176, 215, 618, 888, 1274
Bst4CI	ACNGT	3 cut(s)	1087, 1343, 1740
Bst6I	CTCTTC	3 cut(s)	300, 698, 1750
BstACI	GRCGYC	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	1195
BstAUI	TGTACA	2 cut(s)	1009, 1225
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	274, 643, 855, 945
BstDEI	CTNAG	6 cut(s)	858, 1038, 1122, 1427, 1438, 1495
BstDSI	CCRYGG	3 cut(s)	1061, 1086, 1642
BstF5I	GGATG	4 cut(s)	798, 923, 1048, 1650
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	2 cut(s)	1094, 1560
BstHHI	GCGC	2 cut(s)	1093, 1559
BstKTI	GATC	6 cut(s)	124, 904, 958, 1552, 1641, 1756
BstMAI	GTCTC	4 cut(s)	212, 928, 1349, 1583
BstMBI	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 812, 854, 859, 1043, 1159, 1195
BstNI	CCWGG	5 cut(s)	176, 215, 618, 888, 1274
BstNSI	RCATGY	1 cut(s)	923
BstSCI	CCNGG	6 cut(s)	174, 213, 616, 886, 1272, 1417
BstSFI	CTRYAG	5 cut(s)	650, 753, 876, 951, 1050
BstSLI	GKGCMC	1 cut(s)	949
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	338, 799, 857, 988, 1165, 1315
BstZ17I	GTATAC	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	1138
BsuRI	GGCC	2 cut(s)	581, 751
BtgI	CCRYGG	3 cut(s)	1061, 1086, 1642
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	798, 923, 1048, 1650
BtsI	GCAGTG	1 cut(s)	454
BtsIMutI	CAGTG	3 cut(s)	454, 556, 1443
BveI	ACCTGC	1 cut(s)	1043
Cac8I	GCNNGC	4 cut(s)	274, 643, 855, 945
CaiI	CAGNNNCTG	2 cut(s)	1295, 1445
CciI	TCATGA	1 cut(s)	1758
CfoI	GCGC	2 cut(s)	1093, 1559
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	749, 1058, 1323, 1448
CsiI	ACCWGGT	2 cut(s)	213, 616
Csp6I	GTAC	8 cut(s)	296, 584, 614, 1010, 1083, 1215, 1226, 1435
CviQI	GTAC	8 cut(s)	296, 584, 614, 1010, 1083, 1215, 1226, 1435
DdeI	CTNAG	6 cut(s)	858, 1038, 1122, 1427, 1438, 1495
DinI	GGCGCC	1 cut(s)	1092
DpnI	GATC	6 cut(s)	123, 903, 957, 1551, 1640, 1755
DpnII	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
DraIII	CACNNNGTG	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	300, 698, 1750
EarI	CTCTTC	3 cut(s)	300, 698, 1750
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	1061, 1642
Eco24I	GRGCYC	2 cut(s)	312, 672
Eco31I	GGTCTC	1 cut(s)	928
Eco32I	GATATC	1 cut(s)	1395
Eco47I	GGWCC	3 cut(s)	1058, 1323, 1448
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoRII	CCWGG	5 cut(s)	174, 213, 616, 886, 1272
EcoRV	GATATC	1 cut(s)	1395
EcoT14I	CCWWGG	2 cut(s)	1061, 1642
EcoT22I	ATGCAT	2 cut(s)	925, 1048
EcoT38I	GRGCYC	2 cut(s)	312, 672
EgeI	GGCGCC	1 cut(s)	1092
EheI	GGCGCC	1 cut(s)	1092
ErhI	CCWWGG	2 cut(s)	1061, 1642
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FaqI	GGGAC	1 cut(s)	1470
FauI	CCCGC	3 cut(s)	74, 127, 1527
FbaI	TGATCA	1 cut(s)	1549
FblI	GTMKAC	3 cut(s)	156, 383, 494
Fnu4HI	GCNGC	8 cut(s)	6, 327, 813, 816, 846, 977, 1154, 1329
FokI	GGATG	4 cut(s)	785, 910, 1055, 1637
FriOI	GRGCYC	2 cut(s)	312, 672
Fsp4HI	GCNGC	8 cut(s)	6, 327, 813, 816, 846, 977, 1154, 1329
FspBI	CTAG	2 cut(s)	866, 1266
GlaI	GCGC	2 cut(s)	1092, 1558
GluI	GCNGC	8 cut(s)	6, 327, 813, 816, 846, 977, 1154, 1329
GsuI	CTGGAG	1 cut(s)	206
HaeII	RGCGCY	2 cut(s)	1094, 1560
HaeIII	GGCC	2 cut(s)	581, 751
HapII	CCGG	3 cut(s)	131, 202, 1419
HhaI	GCGC	2 cut(s)	1093, 1559
Hin1I	GRCGYC	1 cut(s)	1091
Hin6I	GCGC	2 cut(s)	1091, 1557
HinP1I	GCGC	2 cut(s)	1091, 1557
HincII	GTYRAC	4 cut(s)	157, 559, 872, 894
HindII	GTYRAC	4 cut(s)	157, 559, 872, 894
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	8 cut(s)	181, 258, 594, 758, 1567, 1591, 1597, 1622
HpaI	GTTAAC	1 cut(s)	559
HpaII	CCGG	3 cut(s)	131, 202, 1419
HphI	GGTGA	2 cut(s)	229, 482
Hpy166II	GTNNAC	9 cut(s)	118, 157, 384, 495, 559, 872, 894, 1012, 1058
Hpy188I	TCNGA	6 cut(s)	263, 435, 1125, 1305, 1388, 1596
Hpy188III	TCNNGA	3 cut(s)	119, 185, 1759
Hpy8I	GTNNAC	9 cut(s)	118, 157, 384, 495, 559, 872, 894, 1012, 1058
Hpy99I	CGWCG	3 cut(s)	161, 164, 172
HpyAV	CCTTC	3 cut(s)	395, 404, 1260
HpyCH4III	ACNGT	3 cut(s)	1087, 1343, 1740
HpyCH4IV	ACGT	5 cut(s)	170, 298, 1002, 1134, 1148
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 812, 854, 859, 1043, 1159, 1195
HpyF3I	CTNAG	6 cut(s)	858, 1038, 1122, 1427, 1438, 1495
HpySE526I	ACGT	5 cut(s)	170, 298, 1002, 1134, 1148
Hsp92I	GRCGYC	1 cut(s)	1091
HspAI	GCGC	2 cut(s)	1091, 1557
KasI	GGCGCC	1 cut(s)	1090
KpnI	GGTACC	1 cut(s)	1086
Ksp22I	TGATCA	1 cut(s)	1549
KspAI	GTTAAC	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	6 cut(s)	187, 333, 444, 1159, 1687, 1727
Lsp1109I	GCAGC	6 cut(s)	338, 799, 857, 988, 1165, 1315
LweI	GCATC	6 cut(s)	183, 932, 1033, 1055, 1488, 1504
MabI	ACCWGGT	2 cut(s)	213, 616
MaeI	CTAG	2 cut(s)	866, 1266
MaeII	ACGT	5 cut(s)	170, 298, 1002, 1134, 1148
MaeIII	GTNAC	1 cut(s)	1501
MalI	GATC	6 cut(s)	123, 903, 957, 1551, 1640, 1755
MboI	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
MfeI	CAATTG	1 cut(s)	1523
MhlI	GDGCHC	4 cut(s)	41, 312, 672, 949
Mly113I	GGCGCC	1 cut(s)	1091
MlyI	GAGTC	1 cut(s)	1585
MnlI	CCTC	7 cut(s)	71, 135, 295, 840, 1033, 1103, 1384
Mph1103I	ATGCAT	2 cut(s)	925, 1048
MroXI	GAANNNNTTC	1 cut(s)	1209
MseI	TTAA	9 cut(s)	284, 288, 369, 558, 623, 675, 710, 1221, 1317
MspA1I	CMGCKG	3 cut(s)	818, 1328, 1499
MspI	CCGG	3 cut(s)	131, 202, 1419
MspR9I	CCNGG	6 cut(s)	176, 215, 618, 888, 1274, 1419
MunI	CAATTG	1 cut(s)	1523
Mva1269I	GAATGC	1 cut(s)	1422
MvaI	CCWGG	5 cut(s)	176, 215, 618, 888, 1274
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	7 cut(s)	92, 812, 854, 859, 1043, 1159, 1195
NarI	GGCGCC	1 cut(s)	1091
NciI	CCSGG	1 cut(s)	1419
NcoI	CCATGG	2 cut(s)	1061, 1642
NdeII	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
NlaIV	GGNNCC	5 cut(s)	1084, 1092, 1248, 1689, 1723
NmeAIII	GCCGAG	1 cut(s)	1684
NmuCI	GTSAC	1 cut(s)	1501
NsiI	ATGCAT	2 cut(s)	925, 1048
NspI	RCATGY	1 cut(s)	923
PacI	TTAATTAA	1 cut(s)	288
PagI	TCATGA	1 cut(s)	1758
PaqCI	CACCTGC	1 cut(s)	1043
PasI	CCCWGGG	1 cut(s)	887
PciSI	GCTCTTC	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	176
PctI	GAATGC	1 cut(s)	1422
PdmI	GAANNNNTTC	1 cut(s)	1209
PfeI	GAWTC	7 cut(s)	181, 258, 594, 758, 1567, 1597, 1622
PflMI	CCANNNNNTGG	2 cut(s)	808, 1697
PkrI	GCNGC	8 cut(s)	7, 328, 814, 817, 847, 978, 1155, 1330
PleI	GAGTC	1 cut(s)	1585
PluTI	GGCGCC	1 cut(s)	1094
PpsI	GAGTC	1 cut(s)	1585
Ppu21I	YACGTR	1 cut(s)	299
PshBI	ATTAAT	2 cut(s)	369, 1221
Psp124BI	GAGCTC	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	1002
Psp6I	CCWGG	5 cut(s)	174, 213, 616, 886, 1272
PspGI	CCWGG	5 cut(s)	174, 213, 616, 886, 1272
PspN4I	GGNNCC	5 cut(s)	1084, 1092, 1248, 1689, 1723
PspPI	GGNCC	4 cut(s)	749, 1058, 1323, 1448
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PstI	CTGCAG	2 cut(s)	654, 1054
PstNI	CAGNNNCTG	2 cut(s)	1295, 1445
PvuII	CAGCTG	1 cut(s)	1499
RsaI	GTAC	8 cut(s)	297, 585, 615, 1011, 1084, 1216, 1227, 1436
RsaNI	GTAC	8 cut(s)	296, 584, 614, 1010, 1083, 1215, 1226, 1435
SacI	GAGCTC	1 cut(s)	312
SalI	GTCGAC	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	9 cut(s)	284, 288, 369, 558, 623, 675, 710, 1221, 1317
SatI	GCNGC	8 cut(s)	6, 327, 813, 816, 846, 977, 1154, 1329
Sau3AI	GATC	6 cut(s)	121, 901, 955, 1549, 1638, 1753
Sau96I	GGNCC	4 cut(s)	749, 1058, 1323, 1448
SchI	GAGTC	1 cut(s)	1585
ScrFI	CCNGG	6 cut(s)	176, 215, 618, 888, 1274, 1419
SduI	GDGCHC	4 cut(s)	41, 312, 672, 949
SexAI	ACCWGGT	2 cut(s)	213, 616
SfaNI	GCATC	6 cut(s)	183, 932, 1033, 1055, 1488, 1504
SfcI	CTRYAG	5 cut(s)	650, 753, 876, 951, 1050
SfoI	GGCGCC	1 cut(s)	1092
SgrAI	CRCCGGYG	1 cut(s)	201
SinI	GGWCC	3 cut(s)	1058, 1323, 1448
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
SsiI	CCGC	9 cut(s)	5, 48, 81, 113, 134, 816, 1066, 1326, 1534
SspDI	GGCGCC	1 cut(s)	1090
SspI	AATATT	1 cut(s)	1696
SspMI	CTAG	2 cut(s)	866, 1266
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	6 cut(s)	174, 213, 616, 886, 1272, 1417
StyI	CCWWGG	2 cut(s)	1061, 1642
TaaI	ACNGT	3 cut(s)	1087, 1343, 1740
TaiI	ACGT	5 cut(s)	173, 301, 1005, 1137, 1151
TaqI	TCGA	3 cut(s)	156, 1519, 1606
TatI	WGTACW	2 cut(s)	1009, 1225
TauI	GCSGC	2 cut(s)	8, 818
TfiI	GAWTC	7 cut(s)	181, 258, 594, 758, 1567, 1597, 1622
Tru1I	TTAA	9 cut(s)	284, 288, 369, 558, 623, 675, 710, 1221, 1317
Tru9I	TTAA	9 cut(s)	284, 288, 369, 558, 623, 675, 710, 1221, 1317
TscAI	CASTG	3 cut(s)	454, 556, 1450
TseFI	GTSAC	1 cut(s)	1501
TseI	GCWGC	6 cut(s)	326, 812, 845, 976, 1153, 1328
Tsp45I	GTSAC	1 cut(s)	1501
TspDTI	ATGAA	5 cut(s)	266, 477, 623, 651, 1129
TspGWI	ACGGA	1 cut(s)	1405
TspRI	CASTG	3 cut(s)	454, 556, 1450
Van91I	CCANNNNNTGG	2 cut(s)	808, 1697
VpaK11BI	GGWCC	3 cut(s)	1058, 1323, 1448
VspI	ATTAAT	2 cut(s)	369, 1221
XapI	RAATTY	2 cut(s)	686, 825
XceI	RCATGY	1 cut(s)	923
XmiI	GTMKAC	3 cut(s)	156, 383, 494
XmnI	GAANNNNTTC	1 cut(s)	1209
XspI	CTAG	2 cut(s)	866, 1266
Zsp2I	ATGCAT	2 cut(s)	925, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.