Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013115

Physical Location & Seq

Genomic Coordinates Forward (+)

489952 .. 492058

Gene Structure 2107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G02050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGGTTCCAGGTTCATCGAAGAAGATGATCGCAACGCAAGAAGAGATGTCTGCAGCTAAAATAGCACTTGGATCTAGAGATATGTGCGCTCATCTCTTGATTCCGCTCAACAAATGTCGTCAGGCTGAGTTTTACCTTCCATGGAAATGTGAAGACGAGCGTCACGTTTATGAGAAGTGTGAATACGAGCTTGTTATGGAGAGAATGCTTGCGATGAAGAAGATCCGTGAAGAAGAAGCTTTGGCTAAACAGAATAAACTACAAGGAAACGCTGCTGTTCCTCTTATCCCTAAAACTGCTAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

103

Amino Acids

11.74

Weight (kDa)

7.65

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 72	1.4e-29	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02050
fragaria_vesca	FvH4_4g35970 FvH4_4g35970
malus_domestica	MD13G1013300.v1.1 MD16G1010200.v1.1 MD17G1273300.v1.1
prunus_persica	Prupe.1G340400_v2.0.a1
pyrus_communis	pycom16g01000
rosa_chinensis	RchiOBHm_Chr4g0445601
rosa_laevigata	RLG00000005726
rosa_multiflora	Rmu_ssc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386080
rosa_rugosa	Rorug04G0362900
rosa_samantha	Rh4AG424300 Rh4BG436400 Rh4CG451000 Rh4DG432900
rosa_wichuraiana	Rw4G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	2 cut(s)	82, 220
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	59, 193, 242
AluI	AGCT	3 cut(s)	59, 193, 242
AlwI	GGATC	2 cut(s)	82, 220
ApeKI	GCWGC	2 cut(s)	56, 275
AspLEI	GCGC	1 cut(s)	92
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	68, 262
BciT130I	CCWGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	2 cut(s)	57, 276
BlsI	GCNGC	2 cut(s)	58, 277
Bme1390I	CCNGG	1 cut(s)	12
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	12
BoxI	GACNNNNGTC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	68, 262
BsmI	GAATGC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	30, 74, 225
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	9
BspMAI	CTGCAG	1 cut(s)	58
BspPI	GGATC	2 cut(s)	82, 220
BsrBI	CCGCTC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	143
BssMI	GATC	3 cut(s)	30, 74, 225
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	12
Bst6I	CTCTTC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	129, 309
BstDSI	CCRYGG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	33, 77, 228
BstMBI	GATC	3 cut(s)	30, 74, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	12
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	68, 262
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	74, 225
BstYI	RGATCY	2 cut(s)	74, 225
BtgI	CCRYGG	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	92
CseI	GACGC	1 cut(s)	152
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	5 cut(s)	59, 128, 193, 242, 248
CviKI_1	RGCY	5 cut(s)	59, 128, 193, 242, 248
DdeI	CTNAG	2 cut(s)	129, 309
DpnI	GATC	3 cut(s)	32, 76, 227
DpnII	GATC	3 cut(s)	30, 74, 225
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	147
FaiI	YATR	4 cut(s)	86, 145, 174, 200
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	2 cut(s)	57, 276
Fsp4HI	GCNGC	2 cut(s)	57, 276
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	57, 276
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	78, 100
HpyAV	CCTTC	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	129, 309
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	30, 74, 225
LpnPI	CCDG	2 cut(s)	24, 110
Lsp1109I	GCAGC	2 cut(s)	68, 262
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	32, 76, 227
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	3 cut(s)	30, 74, 225
MboII	GAAGA	8 cut(s)	34, 37, 56, 167, 232, 235, 245, 248
MflI	RGATCY	2 cut(s)	74, 225
MnlI	CCTC	1 cut(s)	294
MslI	CAYNNNNRTG	2 cut(s)	148, 171
MspR9I	CCNGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	3 cut(s)	30, 74, 225
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	58, 277
PshAI	GACNNNNGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	74, 225
RseI	CAYNNNNRTG	2 cut(s)	148, 171
SatI	GCNGC	2 cut(s)	57, 276
Sau3AI	GATC	3 cut(s)	30, 74, 225
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	7 cut(s)	9, 16, 61, 141, 171, 195, 244
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	148, 171
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	56, 275
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	6, 233
TspGWI	ACGGA	1 cut(s)	218
XbaI	TCTAGA	1 cut(s)	77
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.