Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013115

Physical Location & Seq

Genomic Coordinates Forward (+)

57772601 .. 57774848

Gene Structure 2248 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAGCGGAGGGAACAACGAAGAAGATGATAGCGACGCAGGAGGAGATGGTGGAGAATCGGGTGCCGATAGCGTATCGGGACCAGTGCGCGCACTTGCTGATCCCTCTGAACAAGTGCCGCCAGGCCGAGATGTACCTGCCGTGGAAGTGCGGCAACGAGCGCCACGTGTACGAGAAGTGCGAGTACGAGCTCGTCATGGAGCGGATGCTCCTGATGCAGAAGATCCGAGAGAAGGAGGCCCAGAACAAGGCCCAGATTCAGCAGGGACTCGCCATCCCTCTCATTCCCAAGACCGCCGGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

102

Amino Acids

11.81

Weight (kDa)

8.37

Isoelectric Point (pI)

24.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 70	7.3e-29	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02050
fragaria_vesca	FvH4_4g35970 FvH4_4g35970
malus_domestica	MD13G1013300.v1.1 MD16G1010200.v1.1 MD17G1273300.v1.1
prunus_persica	Prupe.1G340400_v2.0.a1
pyrus_communis	pycom16g01000
rosa_chinensis	RchiOBHm_Chr4g0445601
rosa_laevigata	RLG00000005726
rosa_multiflora	Rmu_ssc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386080
rosa_rugosa	Rorug04G0362900
rosa_samantha	Rh4AG424300 Rh4BG436400 Rh4CG451000 Rh4DG432900
rosa_wichuraiana	Rw4G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	92
AciI	CCGC	5 cut(s)	8, 121, 153, 205, 297
AclWI	GGATC	2 cut(s)	97, 220
AcvI	CACGTG	1 cut(s)	169
AfaI	GTAC	3 cut(s)	137, 173, 188
AfiI	CCNNNNNNNGG	2 cut(s)	235, 250
AflIII	ACRYGT	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	97, 220
AoxI	GGCC	3 cut(s)	126, 240, 252
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	4 cut(s)	92, 94, 165, 305
AspS9I	GGNCC	3 cut(s)	82, 241, 253
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbrPI	CACGTG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	43, 284
BceAI	ACGGC	1 cut(s)	127
BciT130I	CCWGG	1 cut(s)	125
BfoI	RGCGCY	2 cut(s)	166, 306
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	6, 121, 154
BlsI	GCNGC	3 cut(s)	7, 122, 155
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	82, 241, 253
BmiI	GGNNCC	2 cut(s)	66, 83
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	2 cut(s)	198, 207
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 250
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	2 cut(s)	213, 276
BseLI	CCNNNNNNNGG	2 cut(s)	235, 250
BseNI	ACTGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	128, 242, 254
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	2 cut(s)	95, 282
BslI	CCNNNNNNNGG	2 cut(s)	235, 250
BsmFI	GGGAC	2 cut(s)	95, 282
BsnI	GGCC	3 cut(s)	128, 242, 254
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	102, 225
BspACI	CCGC	5 cut(s)	8, 121, 153, 205, 297
BspANI	GGCC	3 cut(s)	128, 242, 254
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	66, 83
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	2 cut(s)	97, 220
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	143
BssHII	GCGCGC	1 cut(s)	90
BssMI	GATC	2 cut(s)	102, 225
Bst2UI	CCWGG	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	92, 301
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	213, 276
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	2 cut(s)	166, 306
BstHHI	GCGC	4 cut(s)	92, 94, 165, 305
BstKTI	GATC	2 cut(s)	105, 228
BstMBI	GATC	2 cut(s)	102, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 217
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	128, 242, 254
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	213, 276
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	92, 301
CfoI	GCGC	4 cut(s)	92, 94, 165, 305
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	3 cut(s)	82, 241, 253
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	136, 172, 187
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	4 cut(s)	128, 193, 242, 254
CviKI_1	RGCY	4 cut(s)	128, 193, 242, 254
CviQI	GTAC	3 cut(s)	136, 172, 187
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	104, 227
DpnII	GATC	2 cut(s)	102, 225
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	2 cut(s)	95, 282
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	3 cut(s)	6, 121, 154
FokI	GGATG	2 cut(s)	220, 263
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	3 cut(s)	6, 121, 154
GlaI	GCGC	4 cut(s)	91, 93, 164, 304
GluI	GCNGC	3 cut(s)	6, 121, 154
HaeII	RGCGCY	2 cut(s)	166, 306
HaeIII	GGCC	3 cut(s)	128, 242, 254
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	4 cut(s)	92, 94, 165, 305
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	4 cut(s)	90, 92, 163, 303
HinP1I	GCGC	4 cut(s)	90, 92, 163, 303
HinfI	GANTC	3 cut(s)	58, 259, 270
HpaII	CCGG	1 cut(s)	300
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	111, 230
Hpy188III	TCNNGA	2 cut(s)	80, 214
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 217
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	4 cut(s)	90, 92, 163, 303
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	102, 225
LmnI	GCTCC	2 cut(s)	202, 216
LpnPI	CCDG	9 cut(s)	26, 98, 110, 137, 152, 227, 251, 257, 269
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	198, 207
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	104, 227
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	102, 225
MboII	GAAGA	3 cut(s)	34, 37, 235
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	4, 37, 117, 232, 291
MreI	CGCCGGCG	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	162, 217
NaeI	GCCGGC	1 cut(s)	301
NdeII	GATC	2 cut(s)	102, 225
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	66, 83
NmeAIII	GCCGAG	1 cut(s)	154
PauI	GCGCGC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	2 cut(s)	165, 180
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	58, 259
PkrI	GCNGC	3 cut(s)	7, 122, 155
PleI	GAGTC	1 cut(s)	264
PmaCI	CACGTG	1 cut(s)	169
PmlI	CACGTG	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	66, 83
PspPI	GGNCC	3 cut(s)	82, 241, 253
PsuI	RGATCY	1 cut(s)	225
PteI	GCGCGC	1 cut(s)	90
RsaI	GTAC	3 cut(s)	137, 173, 188
RsaNI	GTAC	3 cut(s)	136, 172, 187
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	3 cut(s)	6, 121, 154
Sau3AI	GATC	2 cut(s)	102, 225
Sau96I	GGNCC	3 cut(s)	82, 241, 253
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	141, 171, 195
SfaNI	GCATC	2 cut(s)	198, 207
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	5 cut(s)	8, 121, 153, 205, 297
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	123
TaiI	ACGT	1 cut(s)	171
TauI	GCSGC	2 cut(s)	123, 156
TfiI	GAWTC	2 cut(s)	58, 259
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.