Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013115

Physical Location & Seq

Genomic Coordinates Forward (+)

33079335 .. 33081975

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGGCGGAGGGAACGACGAAGAAGATGATAGCGACGCAGGAGGAGATGGTGGAGAACAAGGTGCCGATAGCGTATCGGGACCAGTGCGCGCACTTGCTGATTCCTCTGAACAAGTGCCGGCAGGCGGAGATGTACCTGCCGTGGAAGTGCGGGGGCGAGCGCCACGTGTACGAGAAGTGCGAGTACGAGCTCGTCATGGAGCGGATGCTTCTGATGCAGAAGATCAAAGAGAAGGAGGCTCAGAGCCACAAGGCCCAGATTCCGCAGGGCCAGCCCGCCGCCCTCCCTCTCATTCCCAAGACCGCCAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

106

Amino Acids

12.01

Weight (kDa)

8.35

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 70	7e-29	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02050
fragaria_vesca	FvH4_4g35970 FvH4_4g35970
malus_domestica	MD13G1013300.v1.1 MD16G1010200.v1.1 MD17G1273300.v1.1
prunus_persica	Prupe.1G340400_v2.0.a1
pyrus_communis	pycom16g01000
rosa_chinensis	RchiOBHm_Chr4g0445601
rosa_laevigata	RLG00000005726
rosa_multiflora	Rmu_ssc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386080
rosa_rugosa	Rorug04G0362900
rosa_samantha	Rh4AG424300 Rh4BG436400 Rh4CG451000 Rh4DG432900
rosa_wichuraiana	Rw4G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	92
AciI	CCGC	9 cut(s)	5, 8, 128, 153, 205, 266, 279, 282, 306
AcvI	CACGTG	1 cut(s)	169
AfaI	GTAC	3 cut(s)	137, 173, 188
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	168
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
AoxI	GGCC	2 cut(s)	255, 271
AspLEI	GCGC	3 cut(s)	92, 94, 165
AspS9I	GGNCC	3 cut(s)	82, 256, 271
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbrPI	CACGTG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	127
BfoI	RGCGCY	1 cut(s)	166
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	2 cut(s)	6, 282
BlsI	GCNGC	2 cut(s)	7, 283
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	3 cut(s)	82, 256, 271
BmiI	GGNNCC	2 cut(s)	66, 83
BmsI	GCATC	2 cut(s)	198, 207
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	257
BseNI	ACTGG	1 cut(s)	85
BsePI	GCGCGC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	59
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	2 cut(s)	257, 273
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	257, 273
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	9 cut(s)	5, 8, 128, 153, 205, 266, 279, 282, 306
BspANI	GGCC	2 cut(s)	257, 273
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	66, 83
BspMI	ACCTGC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	120
BsrI	ACTGG	1 cut(s)	85
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	143
BssHII	GCGCGC	1 cut(s)	90
BssMI	GATC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	6 cut(s)	92, 122, 126, 161, 275, 279
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	3 cut(s)	92, 94, 165
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 274
BstUI	CGCG	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	257, 273
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	147
Cac8I	GCNNGC	6 cut(s)	92, 122, 126, 161, 275, 279
CfoI	GCGC	3 cut(s)	92, 94, 165
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	3 cut(s)	82, 256, 271
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	136, 172, 187
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	6 cut(s)	193, 242, 249, 257, 273, 277
CviKI_1	RGCY	6 cut(s)	193, 242, 249, 257, 273, 277
CviQI	GTAC	3 cut(s)	136, 172, 187
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
EciI	GGCGGA	2 cut(s)	23, 143
Ecl136II	GAGCTC	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	193
Eco72I	CACGTG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	195
FaeI	CATG	1 cut(s)	202
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	198
FauI	CCCGC	2 cut(s)	146, 286
Fnu4HI	GCNGC	2 cut(s)	6, 282
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	6, 282
GlaI	GCGC	3 cut(s)	91, 93, 164
GluI	GCNGC	2 cut(s)	6, 282
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	257, 273
HapII	CCGG	1 cut(s)	121
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	3 cut(s)	92, 94, 165
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	3 cut(s)	90, 92, 163
HinP1I	GCGC	3 cut(s)	90, 92, 163
HinfI	GANTC	2 cut(s)	103, 262
HpaII	CCGG	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	111, 216, 246
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	22, 40
HpyAV	CCTTC	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 274
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	3 cut(s)	90, 92, 163
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	8 cut(s)	26, 98, 110, 134, 152, 254, 272, 287
LweI	GCATC	2 cut(s)	198, 207
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	227
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	1 cut(s)	225
MboII	GAAGA	3 cut(s)	34, 37, 235
MhlI	GDGCHC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	4, 37, 117, 232, 296, 300
MroNI	GCCGGC	1 cut(s)	120
MspI	CCGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	217, 274
NaeI	GCCGGC	1 cut(s)	122
NdeII	GATC	1 cut(s)	225
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	66, 83
PauI	GCGCGC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	103, 262
PkrI	GCNGC	2 cut(s)	7, 283
PmaCI	CACGTG	1 cut(s)	169
PmlI	CACGTG	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	195
PspCI	CACGTG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	66, 83
PspPI	GGNCC	3 cut(s)	82, 256, 271
PteI	GCGCGC	1 cut(s)	90
RsaI	GTAC	3 cut(s)	137, 173, 188
RsaNI	GTAC	3 cut(s)	136, 172, 187
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	6, 282
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	3 cut(s)	82, 256, 271
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	66, 141, 171, 195
SfaNI	GCATC	2 cut(s)	198, 207
SinI	GGWCC	1 cut(s)	82
SsiI	CCGC	9 cut(s)	5, 8, 128, 153, 205, 266, 279, 282, 306
SstI	GAGCTC	1 cut(s)	195
TaiI	ACGT	1 cut(s)	171
TauI	GCSGC	2 cut(s)	8, 284
TfiI	GAWTC	2 cut(s)	103, 262
TscAI	CASTG	1 cut(s)	92
TspRI	CASTG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.