Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013115

Physical Location & Seq

Genomic Coordinates Forward (+)

32002792 .. 32006005

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G340400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAGCTGAGGGAACGTCGAAGGAGATGATAGCGACCCAGGCAGAGATGGTGGAGGCTCGGGTGCCGCTGCCCTACAGAGATCAGTGCGCCCACTTGCTCATCCCTCTGAACAAGTGCAGGCAGGCTGAATTCTATCTCCCATGGAAGTGTGAGAACGAACGCCACTCGTACGAGAAGTGCGAGTACGAACTCGTTATGGAGAGAATGCTCCAGATGCAGAAGATCCGTGAAGAAGAAGCCAAGTTGAAGCAGACCAAGAAGAAGGGACAGTCAATTCCTCTCATTCCAAACACTGCCAACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

103

Amino Acids

11.93

Weight (kDa)

7.65

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02050
fragaria_vesca	FvH4_4g35970 FvH4_4g35970
malus_domestica	MD13G1013300.v1.1 MD16G1010200.v1.1 MD17G1273300.v1.1
prunus_persica	Prupe.1G340400_v2.0.a1
pyrus_communis	pycom16g01000
rosa_chinensis	RchiOBHm_Chr4g0445601
rosa_laevigata	RLG00000005726
rosa_multiflora	Rmu_ssc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386080
rosa_rugosa	Rorug04G0362900
rosa_samantha	Rh4AG424300 Rh4BG436400 Rh4CG451000 Rh4DG432900
rosa_wichuraiana	Rw4G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	131
AfaI	GTAC	2 cut(s)	173, 188
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	5, 70
ApoI	RAATTY	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
BbvCI	CCTCAGC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	17, 57
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	41
BfmI	CTRYAG	1 cut(s)	76
BisI	GCNGC	3 cut(s)	6, 68, 71
BlsI	GCNGC	3 cut(s)	7, 69, 72
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	39, 143
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	39, 143
BseGI	GGATG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	17, 57
BsgI	GTGCAG	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	60
BsiWI	CGTACG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	82, 225
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	39, 143
BssMI	GATC	2 cut(s)	82, 225
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	122, 126
BstDEI	CTNAG	2 cut(s)	9, 306
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	85, 228
BstMBI	GATC	2 cut(s)	82, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 217
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	17, 57
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	102
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	92, 294
Cac8I	GCNNGC	2 cut(s)	122, 126
CfoI	GCGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	172, 187
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	8, 59, 128, 242
CviKI_1	RGCY	4 cut(s)	8, 59, 128, 242
CviQI	GTAC	2 cut(s)	172, 187
DdeI	CTNAG	2 cut(s)	9, 306
DpnI	GATC	2 cut(s)	84, 227
DpnII	GATC	2 cut(s)	82, 225
Eco130I	CCWWGG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	60
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	147
FaiI	YATR	2 cut(s)	145, 200
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	6, 68, 71
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	6, 68, 71
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	3 cut(s)	6, 68, 71
GsuI	CTGGAG	1 cut(s)	197
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	16, 259
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	120, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 217
HpyF3I	CTNAG	2 cut(s)	9, 306
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	82, 225
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	5 cut(s)	26, 53, 106, 110, 227
Lsp1109I	GCAGC	2 cut(s)	17, 57
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	17
MalI	GATC	2 cut(s)	84, 227
MboI	GATC	2 cut(s)	82, 225
MboII	GAAGA	4 cut(s)	235, 245, 248, 274
MflI	RGATCY	1 cut(s)	225
MluCI	AATT	2 cut(s)	131, 276
MnlI	CCTC	4 cut(s)	4, 49, 117, 291
MslI	CAYNNNNRTG	1 cut(s)	148
MspA1I	CMGCKG	2 cut(s)	8, 70
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	41, 217
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	82, 225
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	213
Pfl23II	CGTACG	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	7, 69, 72
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspLI	CGTACG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	225
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	173, 188
RsaNI	GTAC	2 cut(s)	172, 187
RseI	CAYNNNNRTG	1 cut(s)	148
SatI	GCNGC	3 cut(s)	6, 68, 71
Sau3AI	GATC	2 cut(s)	82, 225
ScrFI	CCNGG	1 cut(s)	41
SetI	ASST	2 cut(s)	10, 20
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	2 cut(s)	131, 276
SsiI	CCGC	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	131, 276
TauI	GCSGC	1 cut(s)	70
TscAI	CASTG	2 cut(s)	92, 301
TseI	GCWGC	2 cut(s)	5, 70
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	2 cut(s)	92, 301
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.