Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013115

Physical Location & Seq

Genomic Coordinates Reverse (-)

840296 .. 843298

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1013300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCAGCCGAGGGAACGTCGAAGAAGATGATAGCGACGCAGGCGGAGATGGTGGAGAATAGGGTGCCAATTCCGTACAGAGACCAGTGCGCCCACTTGCTGATCCCTCTGAACAAGTGCAGGCAGGCGGAGTTCTACCTCCCATGGAAGTGCGAGAACGAGCGCCACTCCTACGAGAAGTGCGAGTACGAGCTCGTCATGGAGAGGATGCTCGCGATGCAGAAGATCCGCGAGGAGGAGGCCAAGTTGAAGCAGGGAAAGAAGAAGGGGCAGCCGATTCCTCTCATTCCCAACACCGCCAACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

NDUF_B7

Protein Analysis

103

Amino Acids

11.88

Weight (kDa)

8.69

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDUF_B7	PF05676	11 - 72	6.4e-29	NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G02050
fragaria_vesca	FvH4_4g35970 FvH4_4g35970
malus_domestica	MD13G1013300.v1.1 MD16G1010200.v1.1 MD17G1273300.v1.1
prunus_persica	Prupe.1G340400_v2.0.a1
pyrus_communis	pycom16g01000
rosa_chinensis	RchiOBHm_Chr4g0445601
rosa_laevigata	RLG00000005726
rosa_multiflora	Rmu_ssc0000107.1_g000002
rosa_roxburghii	Rroxscaffold_5G00386080
rosa_rugosa	Rorug04G0362900
rosa_samantha	Rh4AG424300 Rh4BG436400 Rh4CG451000 Rh4DG432900
rosa_wichuraiana	Rw4G036380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	64
AccII	CGCG	2 cut(s)	215, 231
AciI	CCGC	4 cut(s)	44, 128, 229, 297
AclWI	GGATC	2 cut(s)	97, 220
AfaI	GTAC	2 cut(s)	77, 188
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	97, 220
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	5, 271
AspLEI	GCGC	2 cut(s)	92, 165
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	17, 283
BccI	CCATC	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	166
BisI	GCNGC	2 cut(s)	6, 272
BlsI	GCNGC	2 cut(s)	7, 273
BmiI	GGNNCC	1 cut(s)	66
BmsI	GCATC	2 cut(s)	198, 207
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	9, 143
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	85
BseDI	CCNNGG	2 cut(s)	9, 143
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	248, 251
BseXI	GCAGC	2 cut(s)	17, 283
BsgI	GTGCAG	1 cut(s)	139
Bsh1236I	CGCG	2 cut(s)	215, 231
BshFI	GGCC	1 cut(s)	242
BshNI	GGYRCC	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	75
BsnI	GGCC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	102, 225
Bsp19I	CCATGG	1 cut(s)	143
Bsp68I	TCGCGA	1 cut(s)	215
BspACI	CCGC	4 cut(s)	44, 128, 229, 297
BspANI	GGCC	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	215, 231
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	97, 220
BspT107I	GGYRCC	1 cut(s)	64
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	2 cut(s)	9, 143
BssMI	GATC	2 cut(s)	102, 225
BssT1I	CCWWGG	1 cut(s)	143
BstC8I	GCNNGC	4 cut(s)	42, 122, 126, 213
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	2 cut(s)	215, 231
BstH2I	RGCGCY	1 cut(s)	166
BstHHI	GCGC	2 cut(s)	92, 165
BstKTI	GATC	2 cut(s)	105, 228
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	102, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 217
BstUI	CGCG	2 cut(s)	215, 231
BstV1I	GCAGC	2 cut(s)	17, 283
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	242
BtgI	CCRYGG	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	92
BtuMI	TCGCGA	1 cut(s)	215
Cac8I	GCNNGC	4 cut(s)	42, 122, 126, 213
CfoI	GCGC	2 cut(s)	92, 165
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	76, 187
CviAII	CATG	2 cut(s)	144, 199
CviJI	RGCY	4 cut(s)	8, 193, 242, 274
CviKI_1	RGCY	4 cut(s)	8, 193, 242, 274
CviQI	GTAC	2 cut(s)	76, 187
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	104, 227
DpnII	GATC	2 cut(s)	102, 225
EciI	GGCGGA	2 cut(s)	59, 143
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	2 cut(s)	147, 202
FaiI	YATR	2 cut(s)	145, 200
FatI	CATG	2 cut(s)	143, 198
Fnu4HI	GCNGC	2 cut(s)	6, 272
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	2 cut(s)	6, 272
GlaI	GCGC	2 cut(s)	91, 164
GluI	GCNGC	2 cut(s)	6, 272
HaeII	RGCGCY	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	242
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	92, 165
Hin1II	CATG	2 cut(s)	147, 202
Hin6I	GCGC	2 cut(s)	90, 163
HinP1I	GCGC	2 cut(s)	90, 163
HinfI	GANTC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	1 cut(s)	214
Hpy99I	CGWCG	2 cut(s)	22, 40
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	2 cut(s)	120, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 217
HpyF3I	CTNAG	1 cut(s)	306
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	147, 202
HspAI	GCGC	2 cut(s)	90, 163
Kzo9I	GATC	2 cut(s)	102, 225
LpnPI	CCDG	5 cut(s)	26, 98, 106, 110, 239
Lsp1109I	GCAGC	2 cut(s)	17, 283
LweI	GCATC	2 cut(s)	198, 207
MaeII	ACGT	1 cut(s)	17
MalI	GATC	2 cut(s)	104, 227
MboI	GATC	2 cut(s)	102, 225
MboII	GAAGA	4 cut(s)	34, 37, 235, 274
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	69
MnlI	CCTC	8 cut(s)	4, 117, 149, 198, 226, 229, 232, 291
MslI	CAYNNNNRTG	1 cut(s)	148
MvnI	CGCG	2 cut(s)	215, 231
MwoI	GCNNNNNNNGC	2 cut(s)	41, 217
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	102, 225
NlaIII	CATG	2 cut(s)	147, 202
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	7, 273
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	225
RruI	TCGCGA	1 cut(s)	215
RsaI	GTAC	2 cut(s)	77, 188
RsaNI	GTAC	2 cut(s)	76, 187
RseI	CAYNNNNRTG	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	2 cut(s)	6, 272
Sau3AI	GATC	2 cut(s)	102, 225
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	20, 141, 195
SfaNI	GCATC	2 cut(s)	198, 207
SmiMI	CAYNNNNRTG	1 cut(s)	148
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	4 cut(s)	44, 128, 229, 297
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	277
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	2 cut(s)	5, 271
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.