transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G03500 |
| fragaria_vesca | FvH4_1g04130 FvH4_1g04130 |
| malus_domestica | MD02G1039800.v1.1 MD15G1180700.v1.1 |
| prunus_persica | Prupe.7G235900_v2.0.a1 |
| pyrus_communis | pycom02g03310 pycom15g16210 |
| rosa_chinensis | RchiOBHm_Chr2g0089601 |
| rosa_laevigata | RLG00000016043 |
| rosa_multiflora | Rmu_sc0004662.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00151720 |
| rosa_rugosa | Rorug02G0001900 Rorug02G0002000 Rorug02G0002100 |
| rosa_samantha | Rh2AG047200 Rh2BG046000 Rh2CG047900 Rh2DG047400 |
| rosa_wichuraiana | Rw2G003960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1133 |
| AccBSI | CCGCTC | 1 cut(s) | 1090 |
| AccII | CGCG | 1 cut(s) | 165 |
| AciI | CCGC | 6 cut(s) | 486, 960, 1028, 1076, 1088, 1137 |
| AclI | AACGTT | 1 cut(s) | 1112 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AcoI | YGGCCR | 1 cut(s) | 583 |
| AcsI | RAATTY | 2 cut(s) | 1058, 1292 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 968 |
| AfaI | GTAC | 2 cut(s) | 271, 953 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 452, 1205 |
| AflII | CTTAAG | 1 cut(s) | 301 |
| AgsI | TTSAA | 7 cut(s) | 61, 110, 160, 402, 752, 1109, 1187 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1173 |
| AjnI | CCWGG | 1 cut(s) | 904 |
| AluBI | AGCT | 7 cut(s) | 24, 45, 106, 169, 361, 533, 746 |
| AluI | AGCT | 7 cut(s) | 24, 45, 106, 169, 361, 533, 746 |
| Alw26I | GTCTC | 2 cut(s) | 146, 562 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AoxI | GGCC | 3 cut(s) | 583, 902, 1025 |
| ApeKI | GCWGC | 2 cut(s) | 483, 1232 |
| ApoI | RAATTY | 2 cut(s) | 1058, 1292 |
| AseI | ATTAAT | 2 cut(s) | 435, 1269 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 114 |
| AspA2I | CCTAGG | 1 cut(s) | 925 |
| AspS9I | GGNCC | 4 cut(s) | 902, 908, 922, 1025 |
| AsuHPI | GGTGA | 2 cut(s) | 1177, 1188 |
| AsuII | TTCGAA | 1 cut(s) | 653 |
| AvaII | GGWCC | 2 cut(s) | 908, 922 |
| AvrII | CCTAGG | 1 cut(s) | 925 |
| BalI | TGGCCA | 1 cut(s) | 585 |
| BanI | GGYRCC | 1 cut(s) | 1133 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 279, 311 |
| BbsI | GAAGAC | 1 cut(s) | 877 |
| BbvCI | CCTCAGC | 1 cut(s) | 1083 |
| BbvI | GCAGC | 2 cut(s) | 495, 1219 |
| BccI | CCATC | 2 cut(s) | 806, 849 |
| BceAI | ACGGC | 1 cut(s) | 1035 |
| BciT130I | CCWGG | 1 cut(s) | 906 |
| BclI | TGATCA | 2 cut(s) | 409, 609 |
| BcoDI | GTCTC | 2 cut(s) | 146, 562 |
| BfaI | CTAG | 4 cut(s) | 128, 224, 867, 926 |
| BfrI | CTTAAG | 1 cut(s) | 301 |
| BglII | AGATCT | 1 cut(s) | 112 |
| BisI | GCNGC | 4 cut(s) | 484, 1028, 1088, 1233 |
| BlnI | CCTAGG | 1 cut(s) | 925 |
| BlpI | GCTNAGC | 1 cut(s) | 357 |
| BlsI | GCNGC | 4 cut(s) | 485, 1029, 1089, 1234 |
| Bme1390I | CCNGG | 1 cut(s) | 906 |
| Bme18I | GGWCC | 2 cut(s) | 908, 922 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1173 |
| BmgT120I | GGNCC | 4 cut(s) | 902, 908, 922, 1025 |
| BmiI | GGNNCC | 4 cut(s) | 308, 368, 942, 1135 |
| BmrFI | CCNGG | 1 cut(s) | 906 |
| BmsI | GCATC | 2 cut(s) | 142, 454 |
| BpiI | GAAGAC | 1 cut(s) | 877 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 544, 576, 941, 973 |
| BpmI | CTGGAG | 1 cut(s) | 830 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1083 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 357 |
| Bpu14I | TTCGAA | 1 cut(s) | 653 |
| BpuEI | CTTGAG | 2 cut(s) | 128, 1038 |
| Bsa29I | ATCGAT | 1 cut(s) | 150 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 562 |
| BsaJI | CCNNGG | 2 cut(s) | 540, 925 |
| BsaWI | WCCGGW | 4 cut(s) | 729, 946, 1127, 1198 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1031, 1061 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 452, 1205 |
| Bse1I | ACTGG | 1 cut(s) | 278 |
| Bse3DI | GCAATG | 1 cut(s) | 667 |
| BseBI | CCWGG | 1 cut(s) | 906 |
| BseCI | ATCGAT | 1 cut(s) | 150 |
| BseDI | CCNNGG | 2 cut(s) | 540, 925 |
| BseGI | GGATG | 2 cut(s) | 351, 1124 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 452, 1205 |
| BseMI | GCAATG | 1 cut(s) | 667 |
| BseMII | CTCAG | 2 cut(s) | 371, 1097 |
| BseNI | ACTGG | 1 cut(s) | 278 |
| BseRI | GAGGAG | 2 cut(s) | 1039, 1071 |
| BseXI | GCAGC | 2 cut(s) | 495, 1219 |
| Bsh1236I | CGCG | 1 cut(s) | 165 |
| BshFI | GGCC | 3 cut(s) | 585, 904, 1027 |
| BshNI | GGYRCC | 1 cut(s) | 1133 |
| BshVI | ATCGAT | 1 cut(s) | 150 |
| BsiSI | CCGG | 5 cut(s) | 719, 730, 947, 1128, 1199 |
| BslFI | GGGAC | 1 cut(s) | 1161 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 452, 1205 |
| BsmAI | GTCTC | 2 cut(s) | 146, 562 |
| BsmBI | CGTCTC | 1 cut(s) | 146 |
| BsmFI | GGGAC | 1 cut(s) | 1161 |
| BsnI | GGCC | 3 cut(s) | 585, 904, 1027 |
| Bso31I | GGTCTC | 1 cut(s) | 562 |
| Bsp119I | TTCGAA | 1 cut(s) | 653 |
| Bsp143I | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 357 |
| BspACI | CCGC | 6 cut(s) | 486, 960, 1028, 1076, 1088, 1137 |
| BspANI | GGCC | 3 cut(s) | 585, 904, 1027 |
| BspCNI | CTCAG | 2 cut(s) | 370, 1096 |
| BspDI | ATCGAT | 1 cut(s) | 150 |
| BspFNI | CGCG | 1 cut(s) | 165 |
| BspHI | TCATGA | 1 cut(s) | 801 |
| BspLI | GGNNCC | 4 cut(s) | 308, 368, 942, 1135 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspQI | GCTCTTC | 1 cut(s) | 753 |
| BspT104I | TTCGAA | 1 cut(s) | 653 |
| BspT107I | GGYRCC | 1 cut(s) | 1133 |
| BspTI | CTTAAG | 1 cut(s) | 301 |
| BspTNI | GGTCTC | 1 cut(s) | 562 |
| BsrBI | CCGCTC | 1 cut(s) | 1090 |
| BsrDI | GCAATG | 1 cut(s) | 667 |
| BsrI | ACTGG | 1 cut(s) | 278 |
| BssECI | CCNNGG | 2 cut(s) | 540, 925 |
| BssMI | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 925 |
| Bst2UI | CCWGG | 1 cut(s) | 906 |
| Bst4CI | ACNGT | 4 cut(s) | 593, 1121, 1175, 1183 |
| Bst6I | CTCTTC | 3 cut(s) | 282, 423, 753 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAFI | CTTAAG | 1 cut(s) | 301 |
| BstBI | TTCGAA | 1 cut(s) | 653 |
| BstC8I | GCNNGC | 4 cut(s) | 35, 167, 182, 767 |
| BstDEI | CTNAG | 5 cut(s) | 20, 357, 507, 1083, 1238 |
| BstDSI | CCRYGG | 1 cut(s) | 540 |
| BstF5I | GGATG | 2 cut(s) | 351, 1124 |
| BstFNI | CGCG | 1 cut(s) | 165 |
| BstKTI | GATC | 6 cut(s) | 91, 115, 150, 412, 612, 1258 |
| BstMAI | GTCTC | 2 cut(s) | 146, 562 |
| BstMBI | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 30, 236, 724, 1084 |
| BstNI | CCWGG | 1 cut(s) | 906 |
| BstNSI | RCATGY | 1 cut(s) | 184 |
| BstSCI | CCNGG | 1 cut(s) | 904 |
| BstUI | CGCG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 2 cut(s) | 495, 1219 |
| BstV2I | GAAGAC | 1 cut(s) | 877 |
| BstX2I | RGATCY | 1 cut(s) | 112 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 266 |
| BstYI | RGATCY | 1 cut(s) | 112 |
| Bsu15I | ATCGAT | 1 cut(s) | 150 |
| BsuRI | GGCC | 3 cut(s) | 585, 904, 1027 |
| BsuTUI | ATCGAT | 1 cut(s) | 150 |
| BtgI | CCRYGG | 1 cut(s) | 540 |
| BtsCI | GGATG | 2 cut(s) | 351, 1124 |
| Cac8I | GCNNGC | 4 cut(s) | 35, 167, 182, 767 |
| CciI | TCATGA | 1 cut(s) | 801 |
| Cfr13I | GGNCC | 4 cut(s) | 902, 908, 922, 1025 |
| ClaI | ATCGAT | 1 cut(s) | 150 |
| Csp6I | GTAC | 2 cut(s) | 270, 952 |
| CviAII | CATG | 4 cut(s) | 181, 607, 802, 965 |
| CviQI | GTAC | 2 cut(s) | 270, 952 |
| DdeI | CTNAG | 5 cut(s) | 20, 357, 507, 1083, 1238 |
| DpnI | GATC | 6 cut(s) | 90, 114, 149, 411, 611, 1257 |
| DpnII | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| DraIII | CACNNNGTG | 1 cut(s) | 968 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1173 |
| EaeI | YGGCCR | 1 cut(s) | 583 |
| Eam1104I | CTCTTC | 3 cut(s) | 282, 423, 753 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1173 |
| EarI | CTCTTC | 3 cut(s) | 282, 423, 753 |
| Eco130I | CCWWGG | 1 cut(s) | 925 |
| Eco31I | GGTCTC | 1 cut(s) | 562 |
| Eco47I | GGWCC | 2 cut(s) | 908, 922 |
| EcoRI | GAATTC | 1 cut(s) | 1058 |
| EcoRII | CCWGG | 1 cut(s) | 904 |
| EcoT14I | CCWWGG | 1 cut(s) | 925 |
| ErhI | CCWWGG | 1 cut(s) | 925 |
| Esp3I | CGTCTC | 1 cut(s) | 146 |
| FaeI | CATG | 4 cut(s) | 184, 610, 805, 968 |
| FaqI | GGGAC | 1 cut(s) | 1161 |
| FatI | CATG | 4 cut(s) | 180, 606, 801, 964 |
| FauNDI | CATATG | 1 cut(s) | 935 |
| FbaI | TGATCA | 2 cut(s) | 409, 609 |
| Fnu4HI | GCNGC | 4 cut(s) | 484, 1028, 1088, 1233 |
| FokI | GGATG | 2 cut(s) | 358, 1111 |
| Fsp4HI | GCNGC | 4 cut(s) | 484, 1028, 1088, 1233 |
| FspBI | CTAG | 4 cut(s) | 128, 224, 867, 926 |
| GluI | GCNGC | 4 cut(s) | 484, 1028, 1088, 1233 |
| GsuI | CTGGAG | 1 cut(s) | 830 |
| HaeIII | GGCC | 3 cut(s) | 585, 904, 1027 |
| HapII | CCGG | 5 cut(s) | 719, 730, 947, 1128, 1199 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 184, 610, 805, 968 |
| HindIII | AAGCTT | 2 cut(s) | 22, 104 |
| HinfI | GANTC | 4 cut(s) | 398, 682, 979, 1148 |
| HpaII | CCGG | 5 cut(s) | 719, 730, 947, 1128, 1199 |
| HphI | GGTGA | 2 cut(s) | 1177, 1188 |
| Hpy166II | GTNNAC | 4 cut(s) | 211, 911, 954, 1000 |
| Hpy188I | TCNGA | 7 cut(s) | 16, 84, 376, 447, 455, 564, 978 |
| Hpy188III | TCNNGA | 6 cut(s) | 145, 284, 550, 802, 847, 1055 |
| Hpy8I | GTNNAC | 4 cut(s) | 211, 911, 954, 1000 |
| Hpy99I | CGWCG | 1 cut(s) | 708 |
| HpyAV | CCTTC | 3 cut(s) | 166, 511, 1181 |
| HpyCH4III | ACNGT | 4 cut(s) | 593, 1121, 1175, 1183 |
| HpyCH4IV | ACGT | 4 cut(s) | 139, 706, 893, 1112 |
| HpyCH4V | TGCA | 5 cut(s) | 33, 180, 184, 467, 727 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 30, 236, 724, 1084 |
| HpyF3I | CTNAG | 5 cut(s) | 20, 357, 507, 1083, 1238 |
| HpySE526I | ACGT | 4 cut(s) | 139, 706, 893, 1112 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 184, 610, 805, 968 |
| Ksp22I | TGATCA | 2 cut(s) | 409, 609 |
| Kzo9I | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| LguI | GCTCTTC | 1 cut(s) | 753 |
| LmnI | GCTCC | 3 cut(s) | 366, 1052, 1095 |
| Lsp1109I | GCAGC | 2 cut(s) | 495, 1219 |
| LweI | GCATC | 2 cut(s) | 142, 454 |
| MaeI | CTAG | 4 cut(s) | 128, 224, 867, 926 |
| MaeII | ACGT | 4 cut(s) | 139, 706, 893, 1112 |
| MaeIII | GTNAC | 2 cut(s) | 1165, 1194 |
| MalI | GATC | 6 cut(s) | 90, 114, 149, 411, 611, 1257 |
| MbiI | CCGCTC | 1 cut(s) | 1090 |
| MboI | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| MflI | RGATCY | 1 cut(s) | 112 |
| MlsI | TGGCCA | 1 cut(s) | 585 |
| MluCI | AATT | 5 cut(s) | 340, 527, 649, 1058, 1292 |
| MluNI | TGGCCA | 1 cut(s) | 585 |
| MlyI | GAGTC | 2 cut(s) | 691, 973 |
| MmeI | TCCRAC | 3 cut(s) | 116, 587, 1001 |
| MnlI | CCTC | 9 cut(s) | 19, 538, 546, 967, 1041, 1060, 1089, 1092, 1150 |
| Mox20I | TGGCCA | 1 cut(s) | 585 |
| MroXI | GAANNNNTTC | 1 cut(s) | 114 |
| MscI | TGGCCA | 1 cut(s) | 585 |
| MseI | TTAA | 5 cut(s) | 192, 302, 435, 1116, 1269 |
| MslI | CAYNNNNRTG | 2 cut(s) | 462, 579 |
| Msp20I | TGGCCA | 1 cut(s) | 585 |
| MspA1I | CMGCKG | 1 cut(s) | 486 |
| MspCI | CTTAAG | 1 cut(s) | 301 |
| MspI | CCGG | 5 cut(s) | 719, 730, 947, 1128, 1199 |
| MspR9I | CCNGG | 1 cut(s) | 906 |
| MvaI | CCWGG | 1 cut(s) | 906 |
| MvnI | CGCG | 1 cut(s) | 165 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 30, 236, 724, 1084 |
| NdeI | CATATG | 1 cut(s) | 935 |
| NdeII | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| NlaIII | CATG | 4 cut(s) | 184, 610, 805, 968 |
| NlaIV | GGNNCC | 4 cut(s) | 308, 368, 942, 1135 |
| NmuCI | GTSAC | 2 cut(s) | 1165, 1194 |
| NspI | RCATGY | 1 cut(s) | 184 |
| NspV | TTCGAA | 1 cut(s) | 653 |
| PaeI | GCATGC | 1 cut(s) | 184 |
| PagI | TCATGA | 1 cut(s) | 801 |
| PciSI | GCTCTTC | 1 cut(s) | 753 |
| PdmI | GAANNNNTTC | 1 cut(s) | 114 |
| PfeI | GAWTC | 2 cut(s) | 398, 1148 |
| PkrI | GCNGC | 4 cut(s) | 485, 1029, 1089, 1234 |
| PleI | GAGTC | 2 cut(s) | 690, 973 |
| PpsI | GAGTC | 2 cut(s) | 690, 973 |
| PshBI | ATTAAT | 2 cut(s) | 435, 1269 |
| Psp1406I | AACGTT | 1 cut(s) | 1112 |
| Psp6I | CCWGG | 1 cut(s) | 904 |
| PspGI | CCWGG | 1 cut(s) | 904 |
| PspN4I | GGNNCC | 4 cut(s) | 308, 368, 942, 1135 |
| PspPI | GGNCC | 4 cut(s) | 902, 908, 922, 1025 |
| PsuI | RGATCY | 1 cut(s) | 112 |
| RsaI | GTAC | 2 cut(s) | 271, 953 |
| RsaNI | GTAC | 2 cut(s) | 270, 952 |
| RseI | CAYNNNNRTG | 2 cut(s) | 462, 579 |
| SapI | GCTCTTC | 1 cut(s) | 753 |
| SaqAI | TTAA | 5 cut(s) | 192, 302, 435, 1116, 1269 |
| SatI | GCNGC | 4 cut(s) | 484, 1028, 1088, 1233 |
| Sau3AI | GATC | 6 cut(s) | 88, 112, 147, 409, 609, 1255 |
| Sau96I | GGNCC | 4 cut(s) | 902, 908, 922, 1025 |
| SchI | GAGTC | 2 cut(s) | 691, 973 |
| ScrFI | CCNGG | 1 cut(s) | 906 |
| SfaNI | GCATC | 2 cut(s) | 142, 454 |
| SfuI | TTCGAA | 1 cut(s) | 653 |
| SinI | GGWCC | 2 cut(s) | 908, 922 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 462, 579 |
| SmlI | CTYRAG | 3 cut(s) | 143, 301, 1053 |
| SmoI | CTYRAG | 3 cut(s) | 143, 301, 1053 |
| SphI | GCATGC | 1 cut(s) | 184 |
| Sse9I | AATT | 5 cut(s) | 340, 527, 649, 1058, 1292 |
| SsiI | CCGC | 6 cut(s) | 486, 960, 1028, 1076, 1088, 1137 |
| SspI | AATATT | 1 cut(s) | 1267 |
| SspMI | CTAG | 4 cut(s) | 128, 224, 867, 926 |
| StyD4I | CCNGG | 1 cut(s) | 904 |
| StyI | CCWWGG | 1 cut(s) | 925 |
| TaaI | ACNGT | 4 cut(s) | 593, 1121, 1175, 1183 |
| TaiI | ACGT | 4 cut(s) | 142, 709, 896, 1115 |
| TaqI | TCGA | 3 cut(s) | 150, 285, 653 |
| TasI | AATT | 5 cut(s) | 340, 527, 649, 1058, 1292 |
| TatI | WGTACW | 1 cut(s) | 951 |
| TauI | GCSGC | 2 cut(s) | 1030, 1090 |
| TfiI | GAWTC | 2 cut(s) | 398, 1148 |
| Tru1I | TTAA | 5 cut(s) | 192, 302, 435, 1116, 1269 |
| Tru9I | TTAA | 5 cut(s) | 192, 302, 435, 1116, 1269 |
| TseFI | GTSAC | 2 cut(s) | 1165, 1194 |
| TseI | GCWGC | 2 cut(s) | 483, 1232 |
| Tsp45I | GTSAC | 2 cut(s) | 1165, 1194 |
| TspDTI | ATGAA | 4 cut(s) | 283, 818, 843, 1113 |
| TspGWI | ACGGA | 2 cut(s) | 557, 1184 |
| Vha464I | CTTAAG | 1 cut(s) | 301 |
| VpaK11BI | GGWCC | 2 cut(s) | 908, 922 |
| VspI | ATTAAT | 2 cut(s) | 435, 1269 |
| XapI | RAATTY | 2 cut(s) | 1058, 1292 |
| XceI | RCATGY | 1 cut(s) | 184 |
| XmaJI | CCTAGG | 1 cut(s) | 925 |
| XmnI | GAANNNNTTC | 1 cut(s) | 114 |
| XspI | CTAG | 4 cut(s) | 128, 224, 867, 926 |