AT2G03500
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
1059545 .. 1062679
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03500.1

Sequence Viewer

Length: 1299 bp
ATGGCGTCCTCATCAGAACTAAGCTTGGATTGCAAGCCACAAAGCTACTCTATGCTTTTGAAATCCTTTGGAGATAACTTTCAGAGCGATCCAACCACACATAAGCTTGAAGATCTTCTCTCTCGCCTAGAACAAGAACGTCTCAAGATCGATGCCTTCAAACGCGAGCTTCCCCTTTGCATGCAACTCCTTAACAATGCTGTGGAAGTTTACAAACAACAACTAGAAGCATATAGAGCAAATAGTAATAACAATAACCAAAGTGTTGGTACAAGACCAGTTCTCGAAGAGTTCATACCCTTAAGGAACCAACCCGAAAAGACAAACAACAAAGGAAGTAATTGGATGACGACTGCTCAGCTATGGAGCCAATCCGAAACCAAACCAAAAAACATTGATTCAACTACTGATCAATCTCTTCCCAAAGACGAGATTAATAGTAGTCCGAAACTCGGACATTTTGATGCAAAACAAAGAAATGGCAGCGGTGCTTTTCTTCCCTTCTCTAAGGAACAATCTTTGCCTGAATTAGCTCTATCCACGGAGGTCAAGAGGGTCTCTCCGACCAACGAACATACTAATGGCCAAGACGGTAATGATGAGAGCATGATCAACAATGATAATAACTATAATAATAATAATAATAACAATTCGAACAGCAATGGAGTTTCTTCTACAACGAGTCAAAGTAATAGAAAGGCACGACGTTGCTGGTCGCCGGACTTGCACCGGAGATTTGTCCAAGCTCTTCAAATGCTTGGTGGCTCGCAAGTGGCTACACCTAAACAAATAAGGGAACTCATGAAAGTTGATGGTTTGACCAATGATGAAGTCAAAAGCCATCTCCAGAAGTATCGGCTTCACACTAGAAGACCAAGCCCAAGCCCACAAACGTCAGGTGGGCCAGGTCCACATTTGGTGGTCCTAGGTGGCATATGGGTTCCACCGGAGTACACCTCCGCACATGGTGGCACTCCGACTCTCTACCACCACCAAGTCCACCACCACCATACCAACACGGCAGGGCCGCCTCCACCACACTTTTGCTCCTCTCAAGAATTCTACACAACTCCACCGCCTCCTCAGCCGCTCCACCACCACCACTTTCAAACGTTTAACGGTTCATCCGGTGGCACCGCCTCTACCGATTCTACTCATCATCAGGTGACGGACAGTCCCACAGTTGAAGGGAAGTCACCGGAGAGTGGTGGTGGAGAGAGAAAAGGGTTGGCTGCTCTTAGGGAAGAATGTGAAGATCACAGCAATATTAATGGAAGTGAAATAACTCTCAAATTCTAA

Protein Analysis

432

Amino Acids

47.96

Weight (kDa)

6.62

Isoelectric Point (pI)

57.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 11 - 76 3.3e-23 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 235 - 286 6.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010878)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1133
AccBSI CCGCTC 1 cut(s) 1090
AccII CGCG 1 cut(s) 165
AciI CCGC 6 cut(s) 486, 960, 1028, 1076, 1088, 1137
AclI AACGTT 1 cut(s) 1112
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 2 cut(s) 1058, 1292
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 968
AfaI GTAC 2 cut(s) 271, 953
AfiI CCNNNNNNNGG 2 cut(s) 452, 1205
AflII CTTAAG 1 cut(s) 301
AgsI TTSAA 7 cut(s) 61, 110, 160, 402, 752, 1109, 1187
AhdI GACNNNNNGTC 1 cut(s) 1173
AjnI CCWGG 1 cut(s) 904
AluBI AGCT 7 cut(s) 24, 45, 106, 169, 361, 533, 746
AluI AGCT 7 cut(s) 24, 45, 106, 169, 361, 533, 746
Alw26I GTCTC 2 cut(s) 146, 562
AlwI GGATC 1 cut(s) 83
AoxI GGCC 3 cut(s) 583, 902, 1025
ApeKI GCWGC 2 cut(s) 483, 1232
ApoI RAATTY 2 cut(s) 1058, 1292
AseI ATTAAT 2 cut(s) 435, 1269
Asp700I GAANNNNTTC 1 cut(s) 114
AspA2I CCTAGG 1 cut(s) 925
AspS9I GGNCC 4 cut(s) 902, 908, 922, 1025
AsuHPI GGTGA 2 cut(s) 1177, 1188
AsuII TTCGAA 1 cut(s) 653
AvaII GGWCC 2 cut(s) 908, 922
AvrII CCTAGG 1 cut(s) 925
BalI TGGCCA 1 cut(s) 585
BanI GGYRCC 1 cut(s) 1133
BarI GAAGNNNNNNTAC 2 cut(s) 279, 311
BbsI GAAGAC 1 cut(s) 877
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 2 cut(s) 495, 1219
BccI CCATC 2 cut(s) 806, 849
BceAI ACGGC 1 cut(s) 1035
BciT130I CCWGG 1 cut(s) 906
BclI TGATCA 2 cut(s) 409, 609
BcoDI GTCTC 2 cut(s) 146, 562
BfaI CTAG 4 cut(s) 128, 224, 867, 926
BfrI CTTAAG 1 cut(s) 301
BglII AGATCT 1 cut(s) 112
BisI GCNGC 4 cut(s) 484, 1028, 1088, 1233
BlnI CCTAGG 1 cut(s) 925
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 4 cut(s) 485, 1029, 1089, 1234
Bme1390I CCNGG 1 cut(s) 906
Bme18I GGWCC 2 cut(s) 908, 922
BmeRI GACNNNNNGTC 1 cut(s) 1173
BmgT120I GGNCC 4 cut(s) 902, 908, 922, 1025
BmiI GGNNCC 4 cut(s) 308, 368, 942, 1135
BmrFI CCNGG 1 cut(s) 906
BmsI GCATC 2 cut(s) 142, 454
BpiI GAAGAC 1 cut(s) 877
BplI GAGNNNNNCTC 4 cut(s) 544, 576, 941, 973
BpmI CTGGAG 1 cut(s) 830
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu1102I GCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 128, 1038
Bsa29I ATCGAT 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 540, 925
BsaWI WCCGGW 4 cut(s) 729, 946, 1127, 1198
BsaXI ACNNNNNCTCC 2 cut(s) 1031, 1061
Bsc4I CCNNNNNNNGG 2 cut(s) 452, 1205
Bse1I ACTGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 667
BseBI CCWGG 1 cut(s) 906
BseCI ATCGAT 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 540, 925
BseGI GGATG 2 cut(s) 351, 1124
BseLI CCNNNNNNNGG 2 cut(s) 452, 1205
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 2 cut(s) 371, 1097
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 2 cut(s) 1039, 1071
BseXI GCAGC 2 cut(s) 495, 1219
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 585, 904, 1027
BshNI GGYRCC 1 cut(s) 1133
BshVI ATCGAT 1 cut(s) 150
BsiSI CCGG 5 cut(s) 719, 730, 947, 1128, 1199
BslFI GGGAC 1 cut(s) 1161
BslI CCNNNNNNNGG 2 cut(s) 452, 1205
BsmAI GTCTC 2 cut(s) 146, 562
BsmBI CGTCTC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 1161
BsnI GGCC 3 cut(s) 585, 904, 1027
Bso31I GGTCTC 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 653
Bsp143I GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 6 cut(s) 486, 960, 1028, 1076, 1088, 1137
BspANI GGCC 3 cut(s) 585, 904, 1027
BspCNI CTCAG 2 cut(s) 370, 1096
BspDI ATCGAT 1 cut(s) 150
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 4 cut(s) 308, 368, 942, 1135
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 753
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 1133
BspTI CTTAAG 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 562
BsrBI CCGCTC 1 cut(s) 1090
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 540, 925
BssMI GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 925
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 4 cut(s) 593, 1121, 1175, 1183
Bst6I CTCTTC 3 cut(s) 282, 423, 753
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 301
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 35, 167, 182, 767
BstDEI CTNAG 5 cut(s) 20, 357, 507, 1083, 1238
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 2 cut(s) 351, 1124
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 6 cut(s) 91, 115, 150, 412, 612, 1258
BstMAI GTCTC 2 cut(s) 146, 562
BstMBI GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
BstMWI GCNNNNNNNGC 4 cut(s) 30, 236, 724, 1084
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 904
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 2 cut(s) 495, 1219
BstV2I GAAGAC 1 cut(s) 877
BstX2I RGATCY 1 cut(s) 112
BstXI CCANNNNNNTGG 1 cut(s) 266
BstYI RGATCY 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 150
BsuRI GGCC 3 cut(s) 585, 904, 1027
BsuTUI ATCGAT 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 2 cut(s) 351, 1124
Cac8I GCNNGC 4 cut(s) 35, 167, 182, 767
CciI TCATGA 1 cut(s) 801
Cfr13I GGNCC 4 cut(s) 902, 908, 922, 1025
ClaI ATCGAT 1 cut(s) 150
Csp6I GTAC 2 cut(s) 270, 952
CviAII CATG 4 cut(s) 181, 607, 802, 965
CviQI GTAC 2 cut(s) 270, 952
DdeI CTNAG 5 cut(s) 20, 357, 507, 1083, 1238
DpnI GATC 6 cut(s) 90, 114, 149, 411, 611, 1257
DpnII GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
DraIII CACNNNGTG 1 cut(s) 968
DriI GACNNNNNGTC 1 cut(s) 1173
EaeI YGGCCR 1 cut(s) 583
Eam1104I CTCTTC 3 cut(s) 282, 423, 753
Eam1105I GACNNNNNGTC 1 cut(s) 1173
EarI CTCTTC 3 cut(s) 282, 423, 753
Eco130I CCWWGG 1 cut(s) 925
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 908, 922
EcoRI GAATTC 1 cut(s) 1058
EcoRII CCWGG 1 cut(s) 904
EcoT14I CCWWGG 1 cut(s) 925
ErhI CCWWGG 1 cut(s) 925
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 4 cut(s) 184, 610, 805, 968
FaqI GGGAC 1 cut(s) 1161
FatI CATG 4 cut(s) 180, 606, 801, 964
FauNDI CATATG 1 cut(s) 935
FbaI TGATCA 2 cut(s) 409, 609
Fnu4HI GCNGC 4 cut(s) 484, 1028, 1088, 1233
FokI GGATG 2 cut(s) 358, 1111
Fsp4HI GCNGC 4 cut(s) 484, 1028, 1088, 1233
FspBI CTAG 4 cut(s) 128, 224, 867, 926
GluI GCNGC 4 cut(s) 484, 1028, 1088, 1233
GsuI CTGGAG 1 cut(s) 830
HaeIII GGCC 3 cut(s) 585, 904, 1027
HapII CCGG 5 cut(s) 719, 730, 947, 1128, 1199
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 184, 610, 805, 968
HindIII AAGCTT 2 cut(s) 22, 104
HinfI GANTC 4 cut(s) 398, 682, 979, 1148
HpaII CCGG 5 cut(s) 719, 730, 947, 1128, 1199
HphI GGTGA 2 cut(s) 1177, 1188
Hpy166II GTNNAC 4 cut(s) 211, 911, 954, 1000
Hpy188I TCNGA 7 cut(s) 16, 84, 376, 447, 455, 564, 978
Hpy188III TCNNGA 6 cut(s) 145, 284, 550, 802, 847, 1055
Hpy8I GTNNAC 4 cut(s) 211, 911, 954, 1000
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 3 cut(s) 166, 511, 1181
HpyCH4III ACNGT 4 cut(s) 593, 1121, 1175, 1183
HpyCH4IV ACGT 4 cut(s) 139, 706, 893, 1112
HpyCH4V TGCA 5 cut(s) 33, 180, 184, 467, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 236, 724, 1084
HpyF3I CTNAG 5 cut(s) 20, 357, 507, 1083, 1238
HpySE526I ACGT 4 cut(s) 139, 706, 893, 1112
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 184, 610, 805, 968
Ksp22I TGATCA 2 cut(s) 409, 609
Kzo9I GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 3 cut(s) 366, 1052, 1095
Lsp1109I GCAGC 2 cut(s) 495, 1219
LweI GCATC 2 cut(s) 142, 454
MaeI CTAG 4 cut(s) 128, 224, 867, 926
MaeII ACGT 4 cut(s) 139, 706, 893, 1112
MaeIII GTNAC 2 cut(s) 1165, 1194
MalI GATC 6 cut(s) 90, 114, 149, 411, 611, 1257
MbiI CCGCTC 1 cut(s) 1090
MboI GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
MflI RGATCY 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 585
MluCI AATT 5 cut(s) 340, 527, 649, 1058, 1292
MluNI TGGCCA 1 cut(s) 585
MlyI GAGTC 2 cut(s) 691, 973
MmeI TCCRAC 3 cut(s) 116, 587, 1001
MnlI CCTC 9 cut(s) 19, 538, 546, 967, 1041, 1060, 1089, 1092, 1150
Mox20I TGGCCA 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 585
MseI TTAA 5 cut(s) 192, 302, 435, 1116, 1269
MslI CAYNNNNRTG 2 cut(s) 462, 579
Msp20I TGGCCA 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 301
MspI CCGG 5 cut(s) 719, 730, 947, 1128, 1199
MspR9I CCNGG 1 cut(s) 906
MvaI CCWGG 1 cut(s) 906
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 30, 236, 724, 1084
NdeI CATATG 1 cut(s) 935
NdeII GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
NlaIII CATG 4 cut(s) 184, 610, 805, 968
NlaIV GGNNCC 4 cut(s) 308, 368, 942, 1135
NmuCI GTSAC 2 cut(s) 1165, 1194
NspI RCATGY 1 cut(s) 184
NspV TTCGAA 1 cut(s) 653
PaeI GCATGC 1 cut(s) 184
PagI TCATGA 1 cut(s) 801
PciSI GCTCTTC 1 cut(s) 753
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 398, 1148
PkrI GCNGC 4 cut(s) 485, 1029, 1089, 1234
PleI GAGTC 2 cut(s) 690, 973
PpsI GAGTC 2 cut(s) 690, 973
PshBI ATTAAT 2 cut(s) 435, 1269
Psp1406I AACGTT 1 cut(s) 1112
Psp6I CCWGG 1 cut(s) 904
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 4 cut(s) 308, 368, 942, 1135
PspPI GGNCC 4 cut(s) 902, 908, 922, 1025
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 271, 953
RsaNI GTAC 2 cut(s) 270, 952
RseI CAYNNNNRTG 2 cut(s) 462, 579
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 5 cut(s) 192, 302, 435, 1116, 1269
SatI GCNGC 4 cut(s) 484, 1028, 1088, 1233
Sau3AI GATC 6 cut(s) 88, 112, 147, 409, 609, 1255
Sau96I GGNCC 4 cut(s) 902, 908, 922, 1025
SchI GAGTC 2 cut(s) 691, 973
ScrFI CCNGG 1 cut(s) 906
SfaNI GCATC 2 cut(s) 142, 454
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 2 cut(s) 908, 922
SmiMI CAYNNNNRTG 2 cut(s) 462, 579
SmlI CTYRAG 3 cut(s) 143, 301, 1053
SmoI CTYRAG 3 cut(s) 143, 301, 1053
SphI GCATGC 1 cut(s) 184
Sse9I AATT 5 cut(s) 340, 527, 649, 1058, 1292
SsiI CCGC 6 cut(s) 486, 960, 1028, 1076, 1088, 1137
SspI AATATT 1 cut(s) 1267
SspMI CTAG 4 cut(s) 128, 224, 867, 926
StyD4I CCNGG 1 cut(s) 904
StyI CCWWGG 1 cut(s) 925
TaaI ACNGT 4 cut(s) 593, 1121, 1175, 1183
TaiI ACGT 4 cut(s) 142, 709, 896, 1115
TaqI TCGA 3 cut(s) 150, 285, 653
TasI AATT 5 cut(s) 340, 527, 649, 1058, 1292
TatI WGTACW 1 cut(s) 951
TauI GCSGC 2 cut(s) 1030, 1090
TfiI GAWTC 2 cut(s) 398, 1148
Tru1I TTAA 5 cut(s) 192, 302, 435, 1116, 1269
Tru9I TTAA 5 cut(s) 192, 302, 435, 1116, 1269
TseFI GTSAC 2 cut(s) 1165, 1194
TseI GCWGC 2 cut(s) 483, 1232
Tsp45I GTSAC 2 cut(s) 1165, 1194
TspDTI ATGAA 4 cut(s) 283, 818, 843, 1113
TspGWI ACGGA 2 cut(s) 557, 1184
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 908, 922
VspI ATTAAT 2 cut(s) 435, 1269
XapI RAATTY 2 cut(s) 1058, 1292
XceI RCATGY 1 cut(s) 184
XmaJI CCTAGG 1 cut(s) 925
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 4 cut(s) 128, 224, 867, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.