Rorug02G0002100
MYB Family

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010878
Physical Location & Seq
Reverse (-)
235044 .. 240070
5027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0002100.1

Sequence Viewer

Length: 1491 bp
ATGGCGGTTGGAGGAGTGATACTGGACGAGTCTGCACTACTTGAGAAATCGAGTGGGTTGCTACCAGCTGCCCACTCTGTGCTGCGTAATCTCCGCCATTCCAACATCCCTACGGGAATTTCTTATGGACCAGGTCTTGAACCTCACAAGGTCAGACTTCTGAAAGAGATTGCGATGCAGTATTCAATCCATTGCTTCATCTTAGATGCATCCTTTATAGATGATGCTATAAATGAGGTCATACTAGCTTGGTGTGACATTGGAGGCAGTATTTTGTACCTAGCCTCTGACAACAAGAAAGACATCTTTCCTAAACTAAGCAAACGTGGTTGGCTGGTTGCTGTTATGAATGTTGAAGGCAGCAGTGCATGTGAGAGTTCAAGCATGGTTTACATCAACAAACTGCAGGAGTTGCCTTTGACTATTTGCCACTTAAATAAGAAGGCAACTGGAAACAGTGTTGTGACAGTTGGTTATATTATGAAGCCTTCTCGTGAAGAAGATTTTGCTAAGAGGGGCGCATTCCCTATGTGTCCAACTCAAAATGGGCTGATTTTCATGCCCCTCACATTTGAACTCCCTCTATCACCTCAGTTACAAGAAGTTGATGTACTTCTCCACAAAGCAACTGATGAAATTATGTCCATTGATTTGAATAGCTCTTTACATTCCTCTAATAAGATAACATACAGCAGGGGCATGCAGGAATTGCAAAGATATATGGAACATCACCAGGACCTCTGTGTGATTGACCCACTTAACTCTATTTATCCTGTATTGGATCGATTGAAAATTCAACAGATTCTACTTGCATTGGAGGATCTCAAAACTGGAAGTTGCTGTGCAATTAGGGGGCCCCATTATCTCAAGGTTGATGATTTTAACCAGACTGGTTTAACTCAGATGCTATCTGAAGCTAAATTAGCTCTTCCAAGTATAGTAAAACCTCAAGTTGCTTGTGGTGTAGCCGATGCTCATAGTATGGCAATTGTCTTTAGAGTTGAAGATTTTAAGGATTTGACTGTTCCTCTTCCAGCAATTATACAGGAATATGTGGATCATTCCTCGACGCTCTACAAATTTTATGTTTTGGGCGAGAAAGTTTACCATGCAGTTAAGAACTCTACACCAAATGCAGATACCTTGATGAAAATATCTGGAAGTAATGAGCCAAAACCTTTGCTCTTTGACAGTCTAAAGTCCTTGCCCACTAGCAAACAGAATCCAAATTCTGTAGATGATAACAGCTCAAAGTCCACTGAGCACTGCCTTGATCTTGATTTGGTTACTCTTGCAGCTAATTTTCTTATGAGAAAGCTTGAACTCACCATCTTTGGCTTTGATGTTGTAATTCAGGAAGGTACTGGTGACCATGTCATTGTAGATGTAAATTACCTTCCATCATTCAAGGAAGTACCCAATGAAGTTGCCATCCCTGCGTTTTGGGATGCTATTAAGAAGAAATTTGAAGTGAAAGGAAGAAATAAGTGA

Protein Analysis

496

Amino Acids

55.0

Weight (kDa)

5.86

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ins134_P3_kin PF05770 286 - 474 2.9e-26 Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010878)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03500
fragaria_vesca FvH4_1g04130 FvH4_1g04130
malus_domestica MD02G1039800.v1.1 MD15G1180700.v1.1
prunus_persica Prupe.7G235900_v2.0.a1
pyrus_communis pycom02g03310 pycom15g16210
rosa_chinensis RchiOBHm_Chr2g0089601
rosa_laevigata RLG00000016043
rosa_multiflora Rmu_sc0004662.1_g000005
rosa_roxburghii Rroxscaffold_2G00151720
rosa_rugosa Rorug02G0001900 Rorug02G0002000 Rorug02G0002100
rosa_samantha Rh2AG047200 Rh2BG046000 Rh2CG047900 Rh2DG047400
rosa_wichuraiana Rw2G003960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 94
AclWI GGATC 3 cut(s) 789, 828, 1065
AcsI RAATTY 5 cut(s) 117, 792, 1079, 1228, 1463
AcuI CTGAAG 1 cut(s) 933
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 4 cut(s) 278, 612, 1363, 1416
AjnI CCWGG 2 cut(s) 130, 732
AluBI AGCT 8 cut(s) 68, 248, 660, 917, 926, 1248, 1298, 1318
AluI AGCT 8 cut(s) 68, 248, 660, 917, 926, 1248, 1298, 1318
Alw21I GWGCWC 1 cut(s) 1266
AlwI GGATC 3 cut(s) 789, 828, 1065
AoxI GGCC 1 cut(s) 854
ApaI GGGCCC 1 cut(s) 858
ApeKI GCWGC 4 cut(s) 68, 82, 360, 1295
ApoI RAATTY 5 cut(s) 117, 792, 1079, 1228, 1463
AspLEI GCGC 1 cut(s) 521
AspS9I GGNCC 4 cut(s) 128, 736, 854, 855
AsuHPI GGTGA 4 cut(s) 579, 722, 1318, 1379
AvaII GGWCC 2 cut(s) 128, 736
BaeGI GKGCMC 1 cut(s) 858
BanII GRGCYC 1 cut(s) 858
BarI GAAGNNNNNNTAC 4 cut(s) 594, 626, 1380, 1412
BauI CACGAG 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 1266
BbvI GCAGC 4 cut(s) 55, 69, 372, 1307
BccI CCATC 3 cut(s) 1337, 1408, 1439
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 2 cut(s) 132, 734
BfaI CTAG 3 cut(s) 245, 281, 1212
BfmI CTRYAG 2 cut(s) 404, 1233
BisI GCNGC 4 cut(s) 69, 83, 361, 1296
BlsI GCNGC 4 cut(s) 70, 84, 362, 1297
Bme1390I CCNGG 2 cut(s) 132, 734
Bme18I GGWCC 2 cut(s) 128, 736
BmgT120I GGNCC 4 cut(s) 128, 736, 854, 855
BmiI GGNNCC 3 cut(s) 855, 856, 857
BmrFI CCNGG 2 cut(s) 132, 734
BmsI GCATC 7 cut(s) 165, 196, 214, 218, 894, 961, 1438
BpuEI CTTGAG 3 cut(s) 62, 851, 933
Bsa29I ATCGAT 1 cut(s) 784
Bse1I ACTGG 5 cut(s) 27, 454, 835, 895, 1369
Bse3DI GCAATG 1 cut(s) 190
BseBI CCWGG 2 cut(s) 132, 734
BseCI ATCGAT 1 cut(s) 784
BseGI GGATG 4 cut(s) 105, 209, 1431, 1453
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 3 cut(s) 605, 914, 1251
BseNI ACTGG 5 cut(s) 27, 454, 835, 895, 1369
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 858
BseXI GCAGC 4 cut(s) 55, 69, 372, 1307
BsgI GTGCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 856
BshVI ATCGAT 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 1266
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 1 cut(s) 856
Bsp120I GGGCCC 1 cut(s) 854
Bsp1286I GDGCHC 2 cut(s) 858, 1266
Bsp143I GATC 4 cut(s) 781, 820, 1057, 1273
BspACI CCGC 2 cut(s) 5, 94
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 3 cut(s) 604, 913, 1252
BspDI ATCGAT 1 cut(s) 784
BspLI GGNNCC 3 cut(s) 855, 856, 857
BspMAI CTGCAG 1 cut(s) 408
BspPI GGATC 3 cut(s) 789, 828, 1065
BspQI GCTCTTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 190
BsrI ACTGG 5 cut(s) 27, 454, 835, 895, 1369
BssMI GATC 4 cut(s) 781, 820, 1057, 1273
BssSI CACGAG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 132, 734
Bst4CI ACNGT 4 cut(s) 458, 469, 1024, 1193
Bst6I CTCTTC 2 cut(s) 933, 1035
BstAPI GCANNNNNTGC 2 cut(s) 412, 709
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 6 cut(s) 202, 317, 510, 591, 900, 1260
BstEII GGTNACC 1 cut(s) 1367
BstF5I GGATG 4 cut(s) 105, 209, 1431, 1453
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 4 cut(s) 784, 823, 1060, 1276
BstMBI GATC 4 cut(s) 781, 820, 1057, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 412, 709, 923, 1436
BstNI CCWGG 2 cut(s) 132, 734
BstNSI RCATGY 2 cut(s) 372, 703
BstPI GGTNACC 1 cut(s) 1367
BstSCI CCNGG 2 cut(s) 130, 732
BstSFI CTRYAG 2 cut(s) 404, 1233
BstSLI GKGCMC 1 cut(s) 858
BstV1I GCAGC 4 cut(s) 55, 69, 372, 1307
BstX2I RGATCY 1 cut(s) 820
BstYI RGATCY 1 cut(s) 820
Bsu15I ATCGAT 1 cut(s) 784
BsuRI GGCC 1 cut(s) 856
BsuTUI ATCGAT 1 cut(s) 784
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 4 cut(s) 105, 209, 1431, 1453
BtsI GCAGTG 2 cut(s) 370, 1264
BtsIMutI CAGTG 4 cut(s) 370, 463, 1257, 1264
Cac8I GCNNGC 1 cut(s) 701
CfoI GCGC 1 cut(s) 521
Cfr13I GGNCC 4 cut(s) 128, 736, 854, 855
ClaI ATCGAT 1 cut(s) 784
CseI GACGC 1 cut(s) 1078
CsiI ACCWGGT 1 cut(s) 130
Csp6I GTAC 4 cut(s) 277, 611, 1362, 1415
CviAII CATG 6 cut(s) 369, 385, 559, 700, 1109, 1373
CviQI GTAC 4 cut(s) 277, 611, 1362, 1415
DdeI CTNAG 6 cut(s) 202, 317, 510, 591, 900, 1260
DpnI GATC 4 cut(s) 783, 822, 1059, 1275
DpnII GATC 4 cut(s) 781, 820, 1057, 1273
DraIII CACNNNGTG 1 cut(s) 79
Eam1104I CTCTTC 2 cut(s) 933, 1035
EarI CTCTTC 2 cut(s) 933, 1035
EciI GGCGGA 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 128, 736
Eco57I CTGAAG 1 cut(s) 933
Eco91I GGTNACC 1 cut(s) 1367
EcoO109I RGGNCCY 3 cut(s) 736, 854, 855
EcoO65I GGTNACC 1 cut(s) 1367
EcoRII CCWGG 2 cut(s) 130, 732
EcoT22I ATGCAT 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 858
FaeI CATG 6 cut(s) 372, 388, 562, 703, 1112, 1376
FatI CATG 6 cut(s) 368, 384, 558, 699, 1108, 1372
Fnu4HI GCNGC 4 cut(s) 69, 83, 361, 1296
FokI GGATG 4 cut(s) 92, 196, 1418, 1460
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 4 cut(s) 69, 83, 361, 1296
FspBI CTAG 3 cut(s) 245, 281, 1212
GlaI GCGC 1 cut(s) 520
GluI GCNGC 4 cut(s) 69, 83, 361, 1296
HaeIII GGCC 1 cut(s) 856
HgaI GACGC 1 cut(s) 1078
HhaI GCGC 1 cut(s) 521
Hin1II CATG 6 cut(s) 372, 388, 562, 703, 1112, 1376
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 1316
HinfI GANTC 3 cut(s) 29, 802, 1222
HphI GGTGA 4 cut(s) 579, 722, 1318, 1379
Hpy166II GTNNAC 3 cut(s) 391, 1105, 1257
Hpy188I TCNGA 5 cut(s) 155, 162, 289, 903, 913
Hpy188III TCNNGA 5 cut(s) 137, 494, 1158, 1277, 1355
Hpy8I GTNNAC 3 cut(s) 391, 1105, 1257
Hpy99I CGWCG 1 cut(s) 1072
HpyAV CCTTC 5 cut(s) 350, 436, 498, 1352, 1406
HpyCH4III ACNGT 4 cut(s) 458, 469, 1024, 1193
HpyCH4IV ACGT 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 4 cut(s) 412, 709, 923, 1436
HpyF3I CTNAG 6 cut(s) 202, 317, 510, 591, 900, 1260
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 6 cut(s) 372, 388, 562, 703, 1112, 1376
HspAI GCGC 1 cut(s) 519
Kzo9I GATC 4 cut(s) 781, 820, 1057, 1273
LguI GCTCTTC 1 cut(s) 933
Lsp1109I GCAGC 4 cut(s) 55, 69, 372, 1307
LweI GCATC 7 cut(s) 165, 196, 214, 218, 894, 961, 1438
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 3 cut(s) 245, 281, 1212
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 5 cut(s) 254, 463, 594, 1285, 1367
MalI GATC 4 cut(s) 783, 822, 1059, 1275
MboI GATC 4 cut(s) 781, 820, 1057, 1273
MboII GAAGA 7 cut(s) 509, 512, 920, 1016, 1022, 1471, 1491
MfeI CAATTG 1 cut(s) 987
MflI RGATCY 1 cut(s) 820
MhlI GDGCHC 2 cut(s) 858, 1266
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 126, 560
Mph1103I ATGCAT 1 cut(s) 211
MseI TTAA 7 cut(s) 434, 759, 882, 896, 1011, 1116, 1455
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 2 cut(s) 132, 734
MunI CAATTG 1 cut(s) 987
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 2 cut(s) 132, 734
MwoI GCNNNNNNNGC 4 cut(s) 412, 709, 923, 1436
NdeII GATC 4 cut(s) 781, 820, 1057, 1273
NlaIII CATG 6 cut(s) 372, 388, 562, 703, 1112, 1376
NlaIV GGNNCC 3 cut(s) 855, 856, 857
NmuCI GTSAC 3 cut(s) 254, 463, 1367
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 2 cut(s) 372, 703
PaeI GCATGC 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 2 cut(s) 802, 1222
PflFI GACNNNGTC 2 cut(s) 132, 1373
PkrI GCNGC 4 cut(s) 70, 84, 362, 1297
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 130, 732
PspEI GGTNACC 1 cut(s) 1367
PspGI CCWGG 2 cut(s) 130, 732
PspN4I GGNNCC 3 cut(s) 855, 856, 857
PspOMI GGGCCC 1 cut(s) 854
PspPI GGNCC 4 cut(s) 128, 736, 854, 855
PspPPI RGGWCCY 1 cut(s) 736
PstI CTGCAG 1 cut(s) 408
PsuI RGATCY 1 cut(s) 820
PsyI GACNNNGTC 2 cut(s) 132, 1373
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 4 cut(s) 278, 612, 1363, 1416
RsaNI GTAC 4 cut(s) 277, 611, 1362, 1415
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 7 cut(s) 434, 759, 882, 896, 1011, 1116, 1455
SatI GCNGC 4 cut(s) 69, 83, 361, 1296
Sau3AI GATC 4 cut(s) 781, 820, 1057, 1273
Sau96I GGNCC 4 cut(s) 128, 736, 854, 855
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 132, 734
SduI GDGCHC 2 cut(s) 858, 1266
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 7 cut(s) 165, 196, 214, 218, 894, 961, 1438
SfcI CTRYAG 2 cut(s) 404, 1233
SinI GGWCC 2 cut(s) 128, 736
SmlI CTYRAG 3 cut(s) 41, 866, 948
SmoI CTYRAG 3 cut(s) 41, 866, 948
SphI GCATGC 1 cut(s) 703
SsiI CCGC 2 cut(s) 5, 94
SspMI CTAG 3 cut(s) 245, 281, 1212
StyD4I CCNGG 2 cut(s) 130, 732
TaaI ACNGT 4 cut(s) 458, 469, 1024, 1193
TaiI ACGT 1 cut(s) 328
TaqI TCGA 3 cut(s) 50, 784, 1067
TatI WGTACW 1 cut(s) 610
TfiI GAWTC 2 cut(s) 802, 1222
Tru1I TTAA 7 cut(s) 434, 759, 882, 896, 1011, 1116, 1455
Tru9I TTAA 7 cut(s) 434, 759, 882, 896, 1011, 1116, 1455
TscAI CASTG 4 cut(s) 370, 463, 1264, 1271
TseFI GTSAC 3 cut(s) 254, 463, 1367
TseI GCWGC 4 cut(s) 68, 82, 360, 1295
Tsp45I GTSAC 3 cut(s) 254, 463, 1367
TspDTI ATGAA 7 cut(s) 187, 362, 497, 547, 648, 1163, 1437
TspRI CASTG 4 cut(s) 370, 463, 1264, 1271
Tth111I GACNNNGTC 2 cut(s) 132, 1373
VpaK11BI GGWCC 2 cut(s) 128, 736
XapI RAATTY 5 cut(s) 117, 792, 1079, 1228, 1463
XceI RCATGY 2 cut(s) 372, 703
XspI CTAG 3 cut(s) 245, 281, 1212
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.