Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010878

Physical Location & Seq

Genomic Coordinates Reverse (-)

225786 .. 228951

Gene Structure 3166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0001900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGACCTTGAATAAAGAAAGGAGAAATAGAAAAAAGAGGAGAGAAAAAAAAGGTCGGAGGCCTGGTGCCTGCATAAGCAAGCAAGACAAACACAAATCAGTCATCACTCGATGCCCATCTACATTTACCACACCCAGCGAGAGTAGTGGTAGCGAAATGGCAGAGTCAGCACTCCCACTCCCACCCCCACCCCCACCCACCCTTCCAAACCCTAACTACCCGGCGGATTCTCCACCACCACCGCCACCGCCAGCTCCGACTCCGACTCCGAATCCCATACTGAGCTGCTTGTCCTCCAAAATTAAAAGGCCTTCGGTTCGAGTGACTTCGGAGTTCGACAGCGACTCGTCGGTCTTCTTCCACAAGGTGTCTTGCAAGCTGTTGGATAGCCTGGCCAAGCTGAAGGTGTCGTTCAACAACGACCGCAAGGGCGAGGTGTCTCCGCCTCACGTGTCATTTATCTCTCAGTACCTCTCCATTCACTACAACTTCGAAGATCAGTCTACCCTCCTCAACAGCTCCCTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCGACTATGGTTGCCAAGCTTGCTGACCCTGGATATGCAGTTCAACTCTCTTCTCCTTTCCCTTCTGCTGGTTTGCCAAGAGCTACCCTTAAATTCCCCCTTGGTGAAGTTACTTTGGAGGAAAAAGAAGAGGAGGAGACGAACAAAATGTTGTCTATCAATGGCATTGTTAAAGGCCAACTTTTGGACGGGCTCTGCACTGCTCACTATGTGGATGAGGAGTTGAAGTTACGATACTCATACAAGGATGAGGAGTTGTCTTTTATCCCATCTATTTCTCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGGTCCTTCAGACAAGTTGAGTTATTGGTACAATTTTGATTCCAACTACTGGAGTACGGTTTACAAGCACACATATGGCAAGGACCTAAAACTGAAAGCTGGTTATGATTCAGAGGTGCGTCTCGGCTGGGCATCTCTTTGGGTTGGGGATGAAGGTGGCAAAGCAAAGACAGCTCCATTGAAGATGAAAGTTCAATTCATGCTCCAAGTACCGCAAGATGACATTAGATCATCAGCCTTGATGTTCCGTGTTAAAAAGAGATGGGACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008213 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010452 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032870 GO:0033993 GO:0034968 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080090 GO:0140110 GO:1901564 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

392

Amino Acids

43.91

Weight (kDa)

9.34

Isoelectric Point (pI)

63.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03500
fragaria_vesca	FvH4_1g04130 FvH4_1g04130
malus_domestica	MD02G1039800.v1.1 MD15G1180700.v1.1
prunus_persica	Prupe.7G235900_v2.0.a1
pyrus_communis	pycom02g03310 pycom15g16210
rosa_chinensis	RchiOBHm_Chr2g0089601
rosa_laevigata	RLG00000016043
rosa_multiflora	Rmu_sc0004662.1_g000005
rosa_roxburghii	Rroxscaffold_2G00151720
rosa_rugosa	Rorug02G0001900 Rorug02G0002000 Rorug02G0002100
rosa_samantha	Rh2AG047200 Rh2BG046000 Rh2CG047900 Rh2DG047400
rosa_wichuraiana	Rw2G003960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccB1I	GGYRCC	1 cut(s)	65
AccB7I	CCANNNNNTGG	2 cut(s)	769, 954
AccI	GTMKAC	1 cut(s)	503
AciI	CCGC	6 cut(s)	224, 242, 248, 424, 443, 1118
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	2 cut(s)	422, 897
AcvI	CACGTG	1 cut(s)	451
AdeI	CACNNNGTG	2 cut(s)	367, 796
AfaI	GTAC	4 cut(s)	470, 935, 961, 1116
AfiI	CCNNNNNNNGG	3 cut(s)	653, 769, 954
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	7 cut(s)	10, 415, 629, 811, 873, 1087, 1100
AjnI	CCWGG	3 cut(s)	61, 390, 613
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	9 cut(s)	254, 285, 379, 400, 519, 604, 668, 1004, 1079
AluI	AGCT	9 cut(s)	254, 285, 379, 400, 519, 604, 668, 1004, 1079
Alw26I	GTCTC	3 cut(s)	444, 716, 1031
AoxI	GGCC	4 cut(s)	59, 308, 393, 760
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
AspS9I	GGNCC	3 cut(s)	533, 908, 988
AsuC2I	CCSGG	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	701
AsuII	TTCGAA	1 cut(s)	492
AvaII	GGWCC	3 cut(s)	533, 908, 988
BalI	TGGCCA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	780
BarI	GAAGNNNNNNTAC	2 cut(s)	803, 835
BbrPI	CACGTG	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	3 cut(s)	124, 862, 1161
BciT130I	CCWGG	3 cut(s)	63, 392, 615
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	444, 716, 1031
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	4 cut(s)	63, 221, 392, 615
Bme18I	GGWCC	3 cut(s)	533, 908, 988
BmgT120I	GGNCC	3 cut(s)	533, 908, 988
BmiI	GGNNCC	2 cut(s)	67, 535
BmrFI	CCNGG	4 cut(s)	63, 221, 392, 615
BmsI	GCATC	2 cut(s)	101, 1046
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	976
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	613, 685
BsaXI	ACNNNNNCTCC	8 cut(s)	49, 79, 162, 192, 250, 280, 797, 827
Bsc4I	CCNNNNNNNGG	3 cut(s)	653, 769, 954
Bse1I	ACTGG	1 cut(s)	959
Bse8I	GATNNNNATC	1 cut(s)	115
BseBI	CCWGG	3 cut(s)	63, 392, 615
BseDI	CCNNGG	2 cut(s)	613, 685
BseGI	GGATG	3 cut(s)	805, 838, 1060
BseJI	GATNNNNATC	1 cut(s)	115
BseLI	CCNNNNNNNGG	3 cut(s)	653, 769, 954
BseMII	CTCAG	2 cut(s)	272, 479
BseNI	ACTGG	1 cut(s)	959
BseRI	GAGGAG	6 cut(s)	52, 500, 731, 734, 818, 851
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	2 cut(s)	134, 1032
BsgI	GTGCAG	1 cut(s)	766
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	4 cut(s)	61, 310, 395, 762
BshNI	GGYRCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	519
BslI	CCNNNNNNNGG	3 cut(s)	653, 769, 954
BsmAI	GTCTC	3 cut(s)	444, 716, 1031
BsmBI	CGTCTC	2 cut(s)	716, 1031
BsmFI	GGGAC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	61, 310, 395, 762
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp143I	GATC	3 cut(s)	496, 562, 1133
BspACI	CCGC	6 cut(s)	224, 242, 248, 424, 443, 1118
BspANI	GGCC	4 cut(s)	61, 310, 395, 762
BspCNI	CTCAG	2 cut(s)	273, 478
BspLI	GGNNCC	2 cut(s)	67, 535
BspT104I	TTCGAA	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	959
BssECI	CCNNGG	2 cut(s)	613, 685
BssMI	GATC	3 cut(s)	496, 562, 1133
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	3 cut(s)	63, 392, 615
Bst4CI	ACNGT	1 cut(s)	964
Bst6I	CTCTTC	2 cut(s)	640, 708
BstBAI	YACGTR	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	492
BstC8I	GCNNGC	5 cut(s)	70, 80, 252, 377, 606
BstDEI	CTNAG	2 cut(s)	281, 465
BstF5I	GGATG	3 cut(s)	805, 838, 1060
BstKTI	GATC	3 cut(s)	499, 565, 1136
BstMAI	GTCTC	3 cut(s)	444, 716, 1031
BstMBI	GATC	3 cut(s)	496, 562, 1133
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 605, 1076
BstNI	CCWGG	3 cut(s)	63, 392, 615
BstSCI	CCNGG	4 cut(s)	61, 219, 390, 613
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	61, 310, 395, 762
BtsCI	GGATG	3 cut(s)	805, 838, 1060
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	1 cut(s)	783
Cac8I	GCNNGC	5 cut(s)	70, 80, 252, 377, 606
Cfr13I	GGNCC	3 cut(s)	533, 908, 988
CseI	GACGC	2 cut(s)	887, 1013
Csp6I	GTAC	4 cut(s)	469, 934, 960, 1115
CviAII	CATG	2 cut(s)	560, 1105
CviQI	GTAC	4 cut(s)	469, 934, 960, 1115
DdeI	CTNAG	2 cut(s)	281, 465
DpnI	GATC	3 cut(s)	498, 564, 1135
DpnII	GATC	3 cut(s)	496, 562, 1133
DraIII	CACNNNGTG	2 cut(s)	367, 796
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	640, 708
EarI	CTCTTC	2 cut(s)	640, 708
EciI	GGCGGA	2 cut(s)	239, 432
Eco130I	CCWWGG	1 cut(s)	685
Eco147I	AGGCCT	2 cut(s)	61, 310
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	3 cut(s)	533, 908, 988
Eco57I	CTGAAG	2 cut(s)	422, 897
Eco72I	CACGTG	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	988
EcoRII	CCWGG	3 cut(s)	61, 390, 613
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	1 cut(s)	685
Esp3I	CGTCTC	2 cut(s)	716, 1031
FaeI	CATG	2 cut(s)	563, 1108
FalI	AAGNNNNNCTT	4 cut(s)	750, 782, 887, 919
FaqI	GGGAC	1 cut(s)	519
FatI	CATG	2 cut(s)	559, 1104
FauNDI	CATATG	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	503
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	3 cut(s)	812, 845, 1067
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	286
GsaI	CCCAGC	2 cut(s)	138, 1036
GsuI	CTGGAG	1 cut(s)	976
HaeIII	GGCC	4 cut(s)	61, 310, 395, 762
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	2 cut(s)	887, 1013
Hin1II	CATG	2 cut(s)	563, 1108
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	8 cut(s)	164, 227, 259, 265, 271, 344, 944, 1013
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	504, 967
Hpy188I	TCNGA	7 cut(s)	57, 258, 264, 270, 331, 916, 1018
Hpy8I	GTNNAC	2 cut(s)	504, 967
Hpy99I	CGWCG	2 cut(s)	352, 903
HpyAV	CCTTC	7 cut(s)	212, 321, 397, 657, 879, 921, 1052
HpyCH4III	ACNGT	1 cut(s)	964
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	72, 375, 544, 623, 783, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 605, 1076
HpyF3I	CTNAG	2 cut(s)	281, 465
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	2 cut(s)	563, 1108
Kzo9I	GATC	3 cut(s)	496, 562, 1133
LmnI	GCTCC	4 cut(s)	259, 524, 1084, 1113
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	101, 1046
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	3 cut(s)	322, 694, 813
MalI	GATC	3 cut(s)	498, 564, 1135
MboI	GATC	3 cut(s)	496, 562, 1133
MboII	GAAGA	6 cut(s)	346, 349, 506, 627, 725, 1099
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	5 cut(s)	300, 545, 677, 937, 1100
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	4 cut(s)	173, 253, 259, 338
MmeI	TCCRAC	5 cut(s)	35, 281, 287, 363, 972
Mox20I	TGGCCA	1 cut(s)	395
Mph1103I	ATGCAT	1 cut(s)	880
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	5 cut(s)	303, 675, 756, 894, 1158
MslI	CAYNNNNRTG	1 cut(s)	978
Msp20I	TGGCCA	1 cut(s)	395
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	4 cut(s)	63, 221, 392, 615
MvaI	CCWGG	3 cut(s)	63, 392, 615
MwoI	GCNNNNNNNGC	3 cut(s)	167, 605, 1076
NciI	CCSGG	1 cut(s)	221
NdeI	CATATG	1 cut(s)	979
NdeII	GATC	3 cut(s)	496, 562, 1133
NlaIII	CATG	2 cut(s)	563, 1108
NlaIV	GGNNCC	2 cut(s)	67, 535
NmeAIII	GCCGAG	1 cut(s)	1008
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	880
NspV	TTCGAA	1 cut(s)	492
PceI	AGGCCT	2 cut(s)	61, 310
PfeI	GAWTC	4 cut(s)	227, 271, 944, 1013
PflMI	CCANNNNNTGG	2 cut(s)	769, 954
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	4 cut(s)	172, 253, 259, 338
PmaCI	CACGTG	1 cut(s)	451
PmlI	CACGTG	1 cut(s)	451
PpsI	GAGTC	4 cut(s)	172, 253, 259, 338
Ppu21I	YACGTR	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	988
Psp5II	RGGWCCY	1 cut(s)	988
Psp6I	CCWGG	3 cut(s)	61, 390, 613
PspCI	CACGTG	1 cut(s)	451
PspFI	CCCAGC	2 cut(s)	134, 1032
PspGI	CCWGG	3 cut(s)	61, 390, 613
PspN4I	GGNNCC	2 cut(s)	67, 535
PspPI	GGNCC	3 cut(s)	533, 908, 988
PspPPI	RGGWCCY	1 cut(s)	988
RsaI	GTAC	4 cut(s)	470, 935, 961, 1116
RsaNI	GTAC	4 cut(s)	469, 934, 960, 1115
RseI	CAYNNNNRTG	1 cut(s)	978
SaqAI	TTAA	5 cut(s)	303, 675, 756, 894, 1158
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	3 cut(s)	496, 562, 1133
Sau96I	GGNCC	3 cut(s)	533, 908, 988
SchI	GAGTC	4 cut(s)	173, 253, 259, 338
ScrFI	CCNGG	4 cut(s)	63, 221, 392, 615
SduI	GDGCHC	1 cut(s)	780
SfaNI	GCATC	2 cut(s)	101, 1046
SfuI	TTCGAA	1 cut(s)	492
SinI	GGWCC	3 cut(s)	533, 908, 988
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	5 cut(s)	300, 545, 677, 937, 1100
SseBI	AGGCCT	2 cut(s)	61, 310
SsiI	CCGC	6 cut(s)	224, 242, 248, 424, 443, 1118
StuI	AGGCCT	2 cut(s)	61, 310
StyD4I	CCNGG	4 cut(s)	61, 219, 390, 613
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	964
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	5 cut(s)	109, 319, 336, 492, 525
TaqII	GACCGA	2 cut(s)	340, 896
TasI	AATT	5 cut(s)	300, 545, 677, 937, 1100
TfiI	GAWTC	4 cut(s)	227, 271, 944, 1013
Tru1I	TTAA	5 cut(s)	303, 675, 756, 894, 1158
Tru9I	TTAA	5 cut(s)	303, 675, 756, 894, 1158
TscAI	CASTG	1 cut(s)	790
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	1071, 1093, 1106
TspGWI	ACGGA	2 cut(s)	539, 1142
TspRI	CASTG	1 cut(s)	790
Van91I	CCANNNNNTGG	2 cut(s)	769, 954
VpaK11BI	GGWCC	3 cut(s)	533, 908, 988
XapI	RAATTY	1 cut(s)	677
XmiI	GTMKAC	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.