AT2G04280

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
1480068 .. 1482089
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04280.1

Sequence Viewer

Length: 1707 bp
ATGTTTGGCCGATCTGCGATTCGTGGAGGAGGATTCCGTGCAGAGAATCTAGGTCAAAACGCACTTACCTTAATCGGTAACATAGGCTTCTCACTCTTCGTCTTCGGAGTACTAATCTTCACCATAATCGCCGCAACTTACGAACCAGAAGATCCTCTCTTCCACCCATCTGACAAAATCACAACTTTCCTCACTTCCACATCAAACGCTACACTTAGATCCGATGACTCCGTTGTTAAAACCGGTGAAGATTTCATGCTCGCTAACCAAACCGCATTTGCAGAGTTTATCAACATAAACGATGTTGAAGCCAGCACCAATGAGACTACTACAGAGGAAGAGGGTAACAAGTTGGAATGTGATGTGAATACTCCAATTGATTGCAAAGATCAGCAAGTGTTTCATCTTATGATGAGAGCTACTATTGACAAGTTTAAAGATATTCACTTTTATAAGTTTGGTAAGCCTGTTACTGGCGAAGAAGGTGTGAATTCTTGTGATATGGCGTGGCGTTATAGGCCTAGAGATGGGAAGAGTGCTGCTTTTTATAAGGATTATAGGAGGTTTGTTGTTGCTAAGTCTGAGAATTGTAGTGTGAGTGTTGTTGGGATTGGTGAGTATCATTCGGGTTTGAATGCGAGGAAGAGGAAGAAGAATCAGAAAGCTGGGTTTGAGAAAACTGGTGGGAAGAAAGATGATTTCTCTTTGCCTGTTGTTGGTGAACTTGTGAATGATTCTCTTCCTATGGTTGAGTCTGATAGTGTGTTTAAGACTGGCAAGTATTTGGTTTATGTTGGTGGTGGAGATAGGTGTAAGAGTATGAATCATTTTCTGTGGAGTTTCTTGTGTGCTCTTGGGGAAGCTCAGTATTTGAATAGGACTCTAGTGATGGATTTGACCTTGTGTTTGTCTTCTATCTATACTTCGTCTGGTCAGAATGAGGAAGGCAAGGATTTCAGGTTTTACTTTGATTTCGAGCATTTGAAAGAAGCTGCTTCTGTGTTGGATGAAGCTCAGTTTTGGGCTCAGTGGGGGAAATTGCGTAAGAAGAGAAGAAATAGATTGAACCTTCATCTCGTGGAGGATTTTAGGGTCACTCCCATGAAGCTCGCGGCTGTCAAAGATACGTTGATAATGAGGAAGTTTGGATCTGTAGAACCAGACAATTATTGGTACAGGGTTTGTGAAGGAGATGCAGAATCTGTTGTTAAACGACCGTGGCATCTGTTATGGAAATCAAGAAGGTTGATGGAAATCGTCTCTGCTATTGCATCAAGGTTAAACTGGGACTACGATGCTGTACACATTGAGAGAGGAGAGAAAGCAAGAAACAAGGAGGTTTGGCCTAATCTTGAAGCGGATACTTCCCCGAGCGCTCTCTTGTCGACCTTGCAGGACAAAGTTGAAGAAGGAAGGCATCTCTACATCGCAACAAATGAAGGAGAATTATCCTTCTTCAACCCTTTGAAAGATAAGTACGCCACTCATTTCCTTTACGACTACAAAGATCTTTGGGATGAGAGCAGTGAGTGGTATTCAGAGACTACTAAGCTTAATGGAGGCAACCCGGTCGAATTTGATGGTTACATGAGAGCATCTGTTGACACAGAAGTATTCTTGAGAGGGAAGAAGCAGATTGAAACATTCAACGATCTTACAAACGATTGTAAAGATGGAGTTGGGACCTGCAATGCTGCAACTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

568

Amino Acids

64.56

Weight (kDa)

5.65

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7074 PF23269 124 - 209 2.7e-38 Domain of unknown function (DUF7074)
DUF7075 PF23272 255 - 548 7.5e-85 Domain of unknown function (DUF7075)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012448)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 453, 549
Acc36I ACCTGC 1 cut(s) 1694
AccI GTMKAC 1 cut(s) 1385
AccII CGCG 1 cut(s) 1112
AciI CCGC 4 cut(s) 132, 273, 1112, 1358
AclWI GGATC 3 cut(s) 146, 213, 1156
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 2 cut(s) 490, 1574
AfaI GTAC 4 cut(s) 111, 1175, 1302, 1478
AfeI AGCGCT 1 cut(s) 1375
AfiI CCNNNNNNNGG 3 cut(s) 473, 527, 716
AgeI ACCGGT 1 cut(s) 242
AluBI AGCT 7 cut(s) 419, 665, 863, 992, 1013, 1108, 1552
AluI AGCT 7 cut(s) 419, 665, 863, 992, 1013, 1108, 1552
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 3 cut(s) 317, 1264, 1535
AlwI GGATC 3 cut(s) 146, 213, 1156
AlwNI CAGNNNCTG 1 cut(s) 1202
Ama87I CYCGRG 1 cut(s) 1369
Aor51HI AGCGCT 1 cut(s) 1375
AoxI GGCC 3 cut(s) 7, 518, 1343
ApeKI GCWGC 3 cut(s) 539, 992, 1694
ApoI RAATTY 2 cut(s) 490, 1574
ArsI GACNNNNNNTTYG 2 cut(s) 889, 921
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 1376
AspS9I GGNCC 1 cut(s) 1683
AsuC2I CCSGG 1 cut(s) 1568
AsuHPI GGTGA 4 cut(s) 112, 257, 626, 731
AvaI CYCGRG 1 cut(s) 1369
AvaII GGWCC 1 cut(s) 1683
BanII GRGCYC 1 cut(s) 1027
BauI CACGAG 1 cut(s) 1076
BbsI GAAGAC 2 cut(s) 94, 903
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 3 cut(s) 526, 979, 1681
BccI CCATC 6 cut(s) 175, 521, 883, 1243, 1574, 1667
BcgI CGANNNNNNTGC 2 cut(s) 1552, 1586
BciVI GTATCC 1 cut(s) 1354
BcnI CCSGG 1 cut(s) 1568
BcoDI GTCTC 3 cut(s) 317, 1264, 1535
BfaI CTAG 3 cut(s) 50, 522, 884
BfmI CTRYAG 2 cut(s) 330, 1152
BfoI RGCGCY 1 cut(s) 1377
BfuAI ACCTGC 1 cut(s) 1694
BfuI GTATCC 1 cut(s) 1354
BglII AGATCT 1 cut(s) 1507
BisI GCNGC 5 cut(s) 132, 540, 993, 1113, 1695
BlsI GCNGC 5 cut(s) 133, 541, 994, 1114, 1696
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 1568
Bme18I GGWCC 1 cut(s) 1683
BmeT110I CYCGRG 1 cut(s) 1369
BmgT120I GGNCC 1 cut(s) 1683
BmiI GGNNCC 1 cut(s) 1684
BmrFI CCNGG 1 cut(s) 1568
BmrI ACTGGG 1 cut(s) 1294
BmsI GCATC 6 cut(s) 1183, 1231, 1280, 1285, 1426, 1604
BmuI ACTGGG 1 cut(s) 1294
BpiI GAAGAC 2 cut(s) 94, 903
BpuEI CTTGAG 1 cut(s) 1639
BpuMI CCSGG 1 cut(s) 1568
BsaBI GATNNNNATC 1 cut(s) 1253
BsaJI CCNNGG 1 cut(s) 1217
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 527, 716
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 4 cut(s) 478, 685, 778, 1289
Bse3DI GCAATG 1 cut(s) 1696
Bse8I GATNNNNATC 1 cut(s) 1253
BseDI CCNNGG 1 cut(s) 1217
BseGI GGATG 2 cut(s) 1012, 1522
BseJI GATNNNNATC 1 cut(s) 1253
BseLI CCNNNNNNNGG 3 cut(s) 473, 527, 716
BseMI GCAATG 1 cut(s) 1696
BseMII CTCAG 4 cut(s) 573, 878, 1028, 1040
BseNI ACTGG 4 cut(s) 478, 685, 778, 1289
BseRI GAGGAG 2 cut(s) 42, 1329
BseXI GCAGC 3 cut(s) 526, 979, 1681
BseYI CCCAGC 1 cut(s) 665
BsgI GTGCAG 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 1112
Bsh1285I CGRYCG 2 cut(s) 1217, 1572
BshFI GGCC 3 cut(s) 9, 520, 1345
BshTI ACCGGT 1 cut(s) 242
BsiEI CGRYCG 2 cut(s) 1217, 1572
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 1369
BsiSI CCGG 2 cut(s) 243, 1568
BslFI GGGAC 2 cut(s) 1301, 1696
BslI CCNNNNNNNGG 3 cut(s) 473, 527, 716
BsmAI GTCTC 3 cut(s) 317, 1264, 1535
BsmBI CGTCTC 1 cut(s) 1264
BsmFI GGGAC 2 cut(s) 1301, 1696
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 3 cut(s) 9, 520, 1345
BsoBI CYCGRG 1 cut(s) 1369
Bsp1286I GDGCHC 2 cut(s) 853, 1027
Bsp1407I TGTACA 1 cut(s) 1300
Bsp143I GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
BspACI CCGC 4 cut(s) 132, 273, 1112, 1358
BspANI GGCC 3 cut(s) 9, 520, 1345
BspCNI CTCAG 4 cut(s) 574, 877, 1027, 1039
BspFNI CGCG 1 cut(s) 1112
BspLI GGNNCC 1 cut(s) 1684
BspMI ACCTGC 1 cut(s) 1694
BspPI GGATC 3 cut(s) 146, 213, 1156
BsrDI GCAATG 1 cut(s) 1696
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 1300
BsrI ACTGG 4 cut(s) 478, 685, 778, 1289
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 1217
BssMI GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
BssSI CACGAG 1 cut(s) 1076
Bst2BI CACGAG 1 cut(s) 1076
Bst4CI ACNGT 1 cut(s) 1218
Bst6I CTCTTC 7 cut(s) 101, 164, 333, 527, 638, 744, 1043
BstAUI TGTACA 1 cut(s) 1300
BstC8I GCNNGC 3 cut(s) 261, 313, 1110
BstDEI CTNAG 7 cut(s) 215, 576, 582, 864, 1014, 1026, 1548
BstDSI CCRYGG 1 cut(s) 1217
BstF5I GGATG 2 cut(s) 1012, 1522
BstFNI CGCG 1 cut(s) 1112
BstH2I RGCGCY 1 cut(s) 1377
BstHHI GCGC 1 cut(s) 1376
BstKTI GATC 7 cut(s) 14, 154, 221, 391, 1151, 1510, 1654
BstMAI GTCTC 3 cut(s) 317, 1264, 1535
BstMBI GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
BstMCI CGRYCG 2 cut(s) 1217, 1572
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstSCI CCNGG 1 cut(s) 1566
BstSFI CTRYAG 2 cut(s) 330, 1152
BstUI CGCG 1 cut(s) 1112
BstV1I GCAGC 3 cut(s) 526, 979, 1681
BstV2I GAAGAC 2 cut(s) 94, 903
BstX2I RGATCY 4 cut(s) 151, 218, 1148, 1507
BstYI RGATCY 4 cut(s) 151, 218, 1148, 1507
BsuI GTATCC 1 cut(s) 1354
BsuRI GGCC 3 cut(s) 9, 520, 1345
BtgI CCRYGG 1 cut(s) 1217
BtgZI GCGATG 1 cut(s) 1411
BtsCI GGATG 2 cut(s) 1012, 1522
BtsI GCAGTG 1 cut(s) 1531
BtsIMutI CAGTG 2 cut(s) 1034, 1531
BveI ACCTGC 1 cut(s) 1694
Cac8I GCNNGC 3 cut(s) 261, 313, 1110
CaiI CAGNNNCTG 1 cut(s) 1202
CfoI GCGC 1 cut(s) 1376
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 1683
Csp6I GTAC 4 cut(s) 110, 1174, 1301, 1477
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 3 cut(s) 256, 1102, 1588
CviQI GTAC 4 cut(s) 110, 1174, 1301, 1477
DdeI CTNAG 7 cut(s) 215, 576, 582, 864, 1014, 1026, 1548
DpnI GATC 7 cut(s) 13, 153, 220, 390, 1150, 1509, 1653
DpnII GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
DraI TTTAAA 1 cut(s) 436
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 7 cut(s) 101, 164, 333, 527, 638, 744, 1043
EarI CTCTTC 7 cut(s) 101, 164, 333, 527, 638, 744, 1043
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 1027
Eco47I GGWCC 1 cut(s) 1683
Eco47III AGCGCT 1 cut(s) 1375
Eco88I CYCGRG 1 cut(s) 1369
EcoO109I RGGNCCY 1 cut(s) 1683
EcoRI GAATTC 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 1027
Esp3I CGTCTC 1 cut(s) 1264
FaeI CATG 3 cut(s) 259, 1105, 1591
FaqI GGGAC 2 cut(s) 1301, 1696
FatI CATG 3 cut(s) 255, 1101, 1587
FblI GTMKAC 1 cut(s) 1385
Fnu4HI GCNGC 5 cut(s) 132, 540, 993, 1113, 1695
FokI GGATG 2 cut(s) 1019, 1529
FriOI GRGCYC 1 cut(s) 1027
Fsp4HI GCNGC 5 cut(s) 132, 540, 993, 1113, 1695
FspBI CTAG 3 cut(s) 50, 522, 884
GlaI GCGC 1 cut(s) 1375
GluI GCNGC 5 cut(s) 132, 540, 993, 1113, 1695
GsaI CCCAGC 1 cut(s) 669
HaeII RGCGCY 1 cut(s) 1377
HaeIII GGCC 3 cut(s) 9, 520, 1345
HapII CCGG 2 cut(s) 243, 1568
HhaI GCGC 1 cut(s) 1376
Hin1II CATG 3 cut(s) 259, 1105, 1591
Hin6I GCGC 1 cut(s) 1374
HinP1I GCGC 1 cut(s) 1374
HincII GTYRAC 2 cut(s) 1386, 1603
HindII GTYRAC 2 cut(s) 1386, 1603
HindIII AAGCTT 1 cut(s) 1550
HpaII CCGG 2 cut(s) 243, 1568
HphI GGTGA 4 cut(s) 112, 257, 626, 731
Hpy166II GTNNAC 4 cut(s) 722, 1303, 1386, 1603
Hpy188I TCNGA 8 cut(s) 107, 172, 223, 583, 660, 757, 936, 1540
Hpy188III TCNNGA 4 cut(s) 1239, 1352, 1618, 1704
Hpy8I GTNNAC 4 cut(s) 722, 1303, 1386, 1603
HpyAV CCTTC 9 cut(s) 476, 938, 1079, 1181, 1236, 1403, 1407, 1433, 1462
HpyCH4III ACNGT 1 cut(s) 1218
HpyCH4IV ACGT 1 cut(s) 1127
HpyCH4V TGCA 8 cut(s) 41, 281, 384, 1196, 1271, 1393, 1689, 1697
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 7 cut(s) 215, 576, 582, 864, 1014, 1026, 1548
HpySE526I ACGT 1 cut(s) 1127
Hsp92II CATG 3 cut(s) 259, 1105, 1591
HspAI GCGC 1 cut(s) 1374
Kzo9I GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
Lsp1109I GCAGC 3 cut(s) 526, 979, 1681
LweI GCATC 6 cut(s) 1183, 1231, 1280, 1285, 1426, 1604
MaeI CTAG 3 cut(s) 50, 522, 884
MaeII ACGT 1 cut(s) 1127
MaeIII GTNAC 5 cut(s) 77, 344, 469, 1093, 1583
MalI GATC 7 cut(s) 13, 153, 220, 390, 1150, 1509, 1653
MboI GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 4 cut(s) 151, 218, 1148, 1507
MhlI GDGCHC 2 cut(s) 853, 1027
MluCI AATT 7 cut(s) 375, 490, 586, 1037, 1165, 1445, 1574
MlyI GAGTC 3 cut(s) 221, 761, 874
MmeI TCCRAC 2 cut(s) 333, 984
MseI TTAA 7 cut(s) 71, 237, 435, 768, 1209, 1280, 1554
MslI CAYNNNNRTG 1 cut(s) 1100
MspI CCGG 2 cut(s) 243, 1568
MspR9I CCNGG 1 cut(s) 1568
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 640
MvnI CGCG 1 cut(s) 1112
MwoI GCNNNNNNNGC 1 cut(s) 517
NciI CCSGG 1 cut(s) 1568
NdeII GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
NlaIII CATG 3 cut(s) 259, 1105, 1591
NlaIV GGNNCC 1 cut(s) 1684
NmuCI GTSAC 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 520
PctI GAATGC 1 cut(s) 640
PfeI GAWTC 7 cut(s) 19, 33, 46, 655, 734, 823, 1199
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 5 cut(s) 133, 541, 994, 1114, 1696
PleI GAGTC 3 cut(s) 221, 760, 874
PpsI GAGTC 3 cut(s) 221, 760, 874
PpuMI RGGWCCY 1 cut(s) 1683
PsiI TTATAA 2 cut(s) 453, 549
Psp5II RGGWCCY 1 cut(s) 1683
PspFI CCCAGC 1 cut(s) 665
PspN4I GGNNCC 1 cut(s) 1684
PspPI GGNCC 1 cut(s) 1683
PspPPI RGGWCCY 1 cut(s) 1683
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 4 cut(s) 151, 218, 1148, 1507
RsaI GTAC 4 cut(s) 111, 1175, 1302, 1478
RsaNI GTAC 4 cut(s) 110, 1174, 1301, 1477
RseI CAYNNNNRTG 1 cut(s) 1100
SalI GTCGAC 1 cut(s) 1384
SaqAI TTAA 7 cut(s) 71, 237, 435, 768, 1209, 1280, 1554
SatI GCNGC 5 cut(s) 132, 540, 993, 1113, 1695
Sau3AI GATC 7 cut(s) 11, 151, 218, 388, 1148, 1507, 1651
Sau96I GGNCC 1 cut(s) 1683
ScaI AGTACT 1 cut(s) 111
SchI GAGTC 3 cut(s) 221, 761, 874
ScrFI CCNGG 1 cut(s) 1568
SduI GDGCHC 2 cut(s) 853, 1027
SfaNI GCATC 6 cut(s) 1183, 1231, 1280, 1285, 1426, 1604
SfcI CTRYAG 2 cut(s) 330, 1152
SinI GGWCC 1 cut(s) 1683
SmiMI CAYNNNNRTG 1 cut(s) 1100
SmlI CTYRAG 1 cut(s) 1618
SmoI CTYRAG 1 cut(s) 1618
Sse9I AATT 7 cut(s) 375, 490, 586, 1037, 1165, 1445, 1574
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 4 cut(s) 132, 273, 1112, 1358
SspMI CTAG 3 cut(s) 50, 522, 884
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 1566
TaaI ACNGT 1 cut(s) 1218
TaiI ACGT 1 cut(s) 1130
TaqI TCGA 3 cut(s) 975, 1385, 1572
TasI AATT 7 cut(s) 375, 490, 586, 1037, 1165, 1445, 1574
TatI WGTACW 2 cut(s) 109, 1300
TauI GCSGC 2 cut(s) 134, 1115
TfiI GAWTC 7 cut(s) 19, 33, 46, 655, 734, 823, 1199
Tru1I TTAA 7 cut(s) 71, 237, 435, 768, 1209, 1280, 1554
Tru9I TTAA 7 cut(s) 71, 237, 435, 768, 1209, 1280, 1554
TscAI CASTG 2 cut(s) 1034, 1531
TseFI GTSAC 1 cut(s) 1093
TseI GCWGC 3 cut(s) 539, 992, 1694
Tsp45I GTSAC 1 cut(s) 1093
TspDTI ATGAA 7 cut(s) 244, 392, 836, 1023, 1061, 1118, 1452
TspGWI ACGGA 2 cut(s) 26, 220
TspRI CASTG 2 cut(s) 1034, 1531
VpaK11BI GGWCC 1 cut(s) 1683
XapI RAATTY 2 cut(s) 490, 1574
XcmI CCANNNNNNNNNTGG 1 cut(s) 1167
XmiI GTMKAC 1 cut(s) 1385
XspI CTAG 3 cut(s) 50, 522, 884
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.