Rorug02G0448800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012448
Physical Location & Seq
Reverse (-)
57587365 .. 57588093
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0448800.1

Sequence Viewer

Length: 729 bp
ATGGCTCGTCCGGTGAAAACAAGTAAGAAACTGCCTCCGATTATGGCCGTGAAGTCGGCAGACTTGTCGGAATCGGCGGACTTGGCTAAAGAAAGTCGACTTCTCAAGAAATTTCGGAACTGCCCTTTTATCTTAAACAAGTATGGCAGCGATGTGACGGAAGAAGATGAAGGTGAGAAGTTGTTCAACGTTTTCTTGGAGTATGCTCAAAGAGGAACCATAGAAGGAACCATAAAGACACCGAGGAATTTCGAGTTGTTTGAGCAGCACGTAAGGAAGTATACACTGTCGGTTTTGAAGGGGCTTAAGTACATTCATGACAAGGGATTTGTGCACTGTGACATTAAGCCCGCAAATATATTCCTTGTAAGTAATGATCCTAAGGATACTGGGTTTGGCTCTTACGTAGCGAAAATCGGGGATTTTGGGCTAGCGAAAAGGGCTACCAAAAACAATATGGTGAAGCGTTCTGAACAAATACATGGCACTGGATTGTATATGTCTCCAGAAGTATCAATTCAAAACATTCTTGAGCCGCCGGCTGACATTTGGGCACTAGGCTGCAGTGTTCTGCAGATGCTGACTGGGAAGAGATTTTGGGATTTCAATACTGACTTAAAAGATGACTGGGGGTTTCCAATTGAGATTCCGATTATTCCGGAAGAGGTAAACGATGAGGCTGAGGATTTTTTGGGGAAGTGCTTCATAATGAACCCTCTAGGAACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

242

Amino Acids

27.34

Weight (kDa)

6.14

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 14 - 239 7.4e-36 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 18 - 196 2.8e-19 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04280 AT4G12700
fragaria_vesca FvH4_6g40420
malus_domestica MD09G1130100.v1.1 MD17G1105300.v1.1
prunus_persica Prupe.3G195000_v2.0.a1 Prupe.3G195000_v2.0.a1
pyrus_communis pycom09g05320
rosa_chinensis RchiOBHm_Chr2g0155651
rosa_laevigata RLG00000020851
rosa_multiflora Rmu_ssc0000430.1_g000005
rosa_roxburghii Rroxscaffold_1G00014560 Rroxscaffold_2G00093590
rosa_rugosa Rorug02G0448800
rosa_samantha Rh2AG514900 Rh2BG525800 Rh2CG499800 Rh2DG534700
rosa_wichuraiana Rw2G042310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 97, 281
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 3 cut(s) 77, 351, 536
AclI AACGTT 1 cut(s) 189
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 110, 247
AfaI GTAC 1 cut(s) 311
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 4 cut(s) 187, 298, 521, 607
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 507
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 1 cut(s) 371
AlwNI CAGNNNCTG 1 cut(s) 580
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 1 cut(s) 45
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 147, 265, 561
ApoI RAATTY 2 cut(s) 110, 247
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
Asp700I GAANNNNTTC 2 cut(s) 182, 701
AsuHPI GGTGA 3 cut(s) 25, 185, 472
AsuNHI GCTAGC 1 cut(s) 430
AxyI CCTNAGG 1 cut(s) 381
BaeGI GKGCMC 2 cut(s) 336, 556
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 681
BbvI GCAGC 3 cut(s) 159, 277, 548
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 3 cut(s) 431, 557, 719
BfmI CTRYAG 2 cut(s) 562, 572
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 4 cut(s) 148, 266, 536, 562
BlsI GCNGC 4 cut(s) 149, 267, 537, 563
BmiI GGNNCC 2 cut(s) 217, 229
BmrI ACTGGG 3 cut(s) 399, 594, 637
BmsI GCATC 1 cut(s) 567
BmtI GCTAGC 1 cut(s) 434
BmuI ACTGGG 3 cut(s) 399, 594, 637
BpmI CTGGAG 1 cut(s) 489
Bpu10I CCTNAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 89, 551
BsaAI YACGTR 2 cut(s) 271, 406
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 2 cut(s) 10, 658
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 4 cut(s) 394, 493, 589, 632
Bse21I CCTNAGG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 658
BseDI CCNNGG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 4 cut(s) 394, 493, 589, 632
BseSI GKGCMC 2 cut(s) 336, 556
BseXI GCAGC 3 cut(s) 159, 277, 548
BshFI GGCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 3 cut(s) 11, 539, 659
BsmAI GTCTC 1 cut(s) 507
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 336, 556
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 3 cut(s) 77, 351, 536
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 673
BspEI TCCGGA 1 cut(s) 658
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 217, 229
BspMAI CTGCAG 2 cut(s) 566, 576
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 1 cut(s) 371
BspTI CTTAAG 1 cut(s) 305
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 4 cut(s) 394, 493, 589, 632
BssAI RCCGGY 1 cut(s) 538
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 376
BssNAI GTATAC 1 cut(s) 282
Bst1107I GTATAC 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 288, 338
Bst6I CTCTTC 2 cut(s) 584, 657
BstAFI CTTAAG 1 cut(s) 305
BstBAI YACGTR 2 cut(s) 271, 406
BstC8I GCNNGC 3 cut(s) 351, 432, 540
BstDEI CTNAG 2 cut(s) 381, 681
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 2 cut(s) 83, 440
BstSFI CTRYAG 2 cut(s) 562, 572
BstSLI GKGCMC 2 cut(s) 336, 556
BstSNI TACGTA 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 159, 277, 548
BstZ17I GTATAC 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 4 cut(s) 284, 334, 486, 571
Cac8I GCNNGC 3 cut(s) 351, 432, 540
CaiI CAGNNNCTG 1 cut(s) 580
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 538
Csp6I GTAC 1 cut(s) 310
CviAII CATG 2 cut(s) 317, 482
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 381, 681
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 584, 657
EarI CTCTTC 2 cut(s) 584, 657
EciI GGCGGA 1 cut(s) 92
Eco105I TACGTA 1 cut(s) 406
Eco81I CCTNAGG 1 cut(s) 381
FaeI CATG 2 cut(s) 320, 485
FatI CATG 2 cut(s) 316, 481
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 2 cut(s) 97, 281
Fnu4HI GCNGC 4 cut(s) 148, 266, 536, 562
Fsp4HI GCNGC 4 cut(s) 148, 266, 536, 562
FspBI CTAG 3 cut(s) 431, 557, 719
GluI GCNGC 4 cut(s) 148, 266, 536, 562
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 1 cut(s) 47
HapII CCGG 3 cut(s) 11, 539, 659
Hin1II CATG 2 cut(s) 320, 485
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 2 cut(s) 71, 646
HpaII CCGG 3 cut(s) 11, 539, 659
HphI GGTGA 3 cut(s) 25, 185, 472
Hpy166II GTNNAC 4 cut(s) 98, 282, 334, 670
Hpy188I TCNGA 5 cut(s) 39, 70, 117, 472, 651
Hpy188III TCNNGA 5 cut(s) 106, 317, 506, 530, 659
Hpy8I GTNNAC 4 cut(s) 98, 282, 334, 670
HpyAV CCTTC 3 cut(s) 164, 218, 292
HpyCH4III ACNGT 2 cut(s) 288, 338
HpyCH4IV ACGT 4 cut(s) 189, 270, 405, 725
HpyCH4V TGCA 3 cut(s) 334, 564, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 440
HpyF3I CTNAG 2 cut(s) 381, 681
HpySE526I ACGT 4 cut(s) 189, 270, 405, 725
Hsp92II CATG 2 cut(s) 320, 485
Kpn2I TCCGGA 1 cut(s) 658
KroI GCCGGC 1 cut(s) 538
KroNI GCCGGC 1 cut(s) 540
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 24, 375, 474, 519, 552, 570, 613, 672
Lsp1109I GCAGC 3 cut(s) 159, 277, 548
LweI GCATC 1 cut(s) 567
MaeI CTAG 3 cut(s) 431, 557, 719
MaeII ACGT 4 cut(s) 189, 270, 405, 725
MaeIII GTNAC 2 cut(s) 154, 338
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 4 cut(s) 173, 176, 601, 674
MfeI CAATTG 1 cut(s) 639
MhlI GDGCHC 2 cut(s) 336, 556
MluCI AATT 4 cut(s) 110, 247, 516, 639
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 7 cut(s) 45, 206, 237, 658, 670, 676, 726
MroI TCCGGA 1 cut(s) 658
MroNI GCCGGC 1 cut(s) 538
MroXI GAANNNNTTC 2 cut(s) 182, 701
MseI TTAA 4 cut(s) 134, 306, 345, 617
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 3 cut(s) 11, 539, 659
MunI CAATTG 1 cut(s) 639
MwoI GCNNNNNNNGC 2 cut(s) 83, 440
NaeI GCCGGC 1 cut(s) 540
NdeII GATC 1 cut(s) 376
NgoMIV GCCGGC 1 cut(s) 538
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 2 cut(s) 320, 485
NlaIV GGNNCC 2 cut(s) 217, 229
NmuCI GTSAC 2 cut(s) 154, 338
PagI TCATGA 1 cut(s) 316
PdiI GCCGGC 1 cut(s) 540
PdmI GAANNNNTTC 2 cut(s) 182, 701
PfeI GAWTC 2 cut(s) 71, 646
PkrI GCNGC 4 cut(s) 149, 267, 537, 563
Ppu21I YACGTR 2 cut(s) 271, 406
Psp1406I AACGTT 1 cut(s) 189
PspN4I GGNNCC 2 cut(s) 217, 229
PstI CTGCAG 2 cut(s) 566, 576
PstNI CAGNNNCTG 1 cut(s) 580
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SalI GTCGAC 1 cut(s) 96
SaqAI TTAA 4 cut(s) 134, 306, 345, 617
SatI GCNGC 4 cut(s) 148, 266, 536, 562
Sau3AI GATC 1 cut(s) 376
SduI GDGCHC 2 cut(s) 336, 556
SetI ASST 6 cut(s) 175, 192, 273, 408, 669, 728
SfaNI GCATC 1 cut(s) 567
SfcI CTRYAG 2 cut(s) 562, 572
SmlI CTYRAG 3 cut(s) 104, 305, 530
SmoI CTYRAG 3 cut(s) 104, 305, 530
SnaBI TACGTA 1 cut(s) 406
Sse9I AATT 4 cut(s) 110, 247, 516, 639
SsiI CCGC 3 cut(s) 77, 351, 536
SspMI CTAG 3 cut(s) 431, 557, 719
TaaI ACNGT 2 cut(s) 288, 338
TaiI ACGT 4 cut(s) 192, 273, 408, 728
TaqI TCGA 2 cut(s) 97, 252
TasI AATT 4 cut(s) 110, 247, 516, 639
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 2 cut(s) 71, 646
Tru1I TTAA 4 cut(s) 134, 306, 345, 617
Tru9I TTAA 4 cut(s) 134, 306, 345, 617
TscAI CASTG 4 cut(s) 291, 341, 493, 571
TseFI GTSAC 2 cut(s) 154, 338
TseI GCWGC 3 cut(s) 147, 265, 561
Tsp45I GTSAC 2 cut(s) 154, 338
TspDTI ATGAA 4 cut(s) 183, 305, 694, 725
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 4 cut(s) 291, 341, 493, 571
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 332
XapI RAATTY 2 cut(s) 110, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 97, 281
XmnI GAANNNNTTC 2 cut(s) 182, 701
XspI CTAG 3 cut(s) 431, 557, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.