AT2G05790

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015945
Physical Location & Seq
Forward (+)
2199151 .. 2201603
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G05790.1

Sequence Viewer

Length: 1419 bp
ATGGATCTCCTCACACCACTCATCTTCCTCCTCCTCCTCCTCTCACCATTTTCACTCTCAGATGCTGGTTCCATCGGAGTAAACTACGGCCGAATCTCCGACGAACTCCCCTCCGCATTCAAAGTAGTCCAACTACTAAAATCCCAAGGAATCACGCGAGTCAAAATCTTCGACGCAGACCCATCAGTTCTCAAAGCATTATCCGGATCTGGAATCAAAGTCACCGTAGATCTCCCCAACGAGTTACTCTTCTCCGCCGCCAAAAGAACTTCCTTCGCCGTCTCATGGGTCAAACGCAACGTAGCAGCTTATCATCCTTCAACACAGATCGAATCAATAGCTGTTGGTAACGAAGTCTTCGTTGATACACACAACACTACAAGCTTCTTGATCCCTGCAATGAGAAACATTCACAAAGCTCTTATGAGTTTCAATCTCCACTCCGACATTAAAATCTCTTCTCCTCTTGCTTTAAGCGCTCTTCAAAACTCTTACCCTTCTTCCTCCGGTTCTTTCCGACCAGAACTTATTGACTCTGTTATCAAACCAATGCTTGACTTCTTACGTGAAACTGGTTCAAGACTTATGATCAATGTCTATCCTTTCTTTGCTTATGAAGGAAACTCTGACGTCATTCCTTTAGATTATGCTTTGCTTAGAGAGAATCCAGGAATGGTTGATTCTGGTAATGGTTTGAGATACTTTAATCTCTTCGACGCTCAAATCGACGCCGTTTTCGCAGCAATGTCGGCTTTAAAGTACGATGATATCGAAATCATTGTCACGGAAACTGGTTGGCCGTCGAAAGGAGATGAGAATGAAGTCGGAGCTACTCTAGCTAACGCAGCTTCTTACAACGGAAACTTAATCCGTCGGATCTTGACACGTGGAGGTACACCGTTACGTCCTAAAGCAGATCTAACGGTCTATCTTTTCGCTCTGTTCAACGAGAACAAGAAGTTAGGTCCAACGTCGGAGAGAAACTATGGTCTCTTCTTCCCTGATGAGAAGAAAGTCTACGACATTCCTTTCACAACAGAGGGGTTGAAACATTACCGTGACGGTGGTCATACTCCGGTCACTGGAGGAGATCAGGTTACAAAGCCTCCGATGAGTGGAGGCGTGTCGAAGAGTTTGAATGGTTATACTTGGTGTGTAGCTAATGGTGATGCTGGTGAAGAAAGGTTACAAGGTGGTTTAGATTATGCTTGTGGTGAAGGTGGTGCTGATTGTCGTCCTATTCAACCTGGTGCTAACTGTTATAGTCCTGATACACTTGAGGCTCACGCTTCGTTTGCTTTCAATAGTTATTACCAGAAGAAGGGTCGTGCCGGTGGGAGTTGTTACTTCGGCGGCGCCGCTTACGTCGTTAGCCAACCACCGAAGTATGGAAGATGCGAGTTTCCGACAGGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_17 X8

Protein Analysis

472

Amino Acids

51.31

Weight (kDa)

5.88

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 344 3e-87 Glycosyl hydrolases family 17
X8 PF07983 383 - 454 2.1e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05790
fragaria_vesca FvH4_6g42190
malus_domestica MD09G1113900.v1.1 MD17G1104000.v1.1
prunus_persica Prupe.3G210700_v2.0.a1
pyrus_communis pycom09g03790
rosa_chinensis RchiOBHm_Chr2g0158111
rosa_laevigata RLG00000021060
rosa_multiflora Rmu_sc0005982.1_g000010
rosa_roxburghii Rroxscaffold_2G00091660
rosa_samantha Rh2AG532100 Rh2BG546200 Rh2CG516000 Rh2DG554700
rosa_wichuraiana Rw2G043990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 633
AccB1I GGYRCC 1 cut(s) 1355
AccI GTMKAC 1 cut(s) 1017
AccII CGCG 1 cut(s) 157
AccIII TCCGGA 1 cut(s) 203
AciI CCGC 5 cut(s) 114, 255, 258, 1353, 1359
AclWI GGATC 4 cut(s) 12, 214, 385, 884
AcoI YGGCCR 2 cut(s) 88, 797
AcvI CACGTG 1 cut(s) 887
AcyI GRCGYC 3 cut(s) 630, 729, 1356
AfaI GTAC 2 cut(s) 761, 895
AfeI AGCGCT 1 cut(s) 478
AfiI CCNNNNNNNGG 6 cut(s) 285, 806, 1082, 1115, 1321, 1388
AflIII ACRYGT 1 cut(s) 884
AjnI CCWGG 2 cut(s) 667, 1246
AluBI AGCT 8 cut(s) 308, 341, 384, 419, 830, 839, 848, 1160
AluI AGCT 8 cut(s) 308, 341, 384, 419, 830, 839, 848, 1160
Alw26I GTCTC 2 cut(s) 286, 995
AlwI GGATC 4 cut(s) 12, 214, 385, 884
AlwNI CAGNNNCTG 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 203
Aor51HI AGCGCT 1 cut(s) 478
AoxI GGCC 2 cut(s) 88, 797
ApeKI GCWGC 3 cut(s) 305, 740, 845
ArsI GACNNNNNNTTYG 4 cut(s) 719, 751, 765, 797
AspLEI GCGC 2 cut(s) 479, 1358
AspS9I GGNCC 1 cut(s) 965
AsuHPI GGTGA 5 cut(s) 36, 214, 1178, 1187, 1226
AvaII GGWCC 1 cut(s) 965
BanI GGYRCC 1 cut(s) 1355
BarI GAAGNNNNNNTAC 4 cut(s) 1001, 1033, 1170, 1202
BbrPI CACGTG 1 cut(s) 887
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 3 cut(s) 317, 752, 857
BccI CCATC 2 cut(s) 80, 190
BceAI ACGGC 4 cut(s) 103, 263, 716, 784
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciT130I CCWGG 2 cut(s) 669, 1248
BclI TGATCA 1 cut(s) 588
BcoDI GTCTC 2 cut(s) 286, 995
BfaI CTAG 1 cut(s) 836
BfoI RGCGCY 2 cut(s) 480, 1359
BglII AGATCT 2 cut(s) 229, 916
BisI GCNGC 6 cut(s) 258, 306, 741, 846, 1354, 1359
BlsI GCNGC 6 cut(s) 259, 307, 742, 847, 1355, 1360
Bme1390I CCNGG 2 cut(s) 669, 1248
Bme18I GGWCC 1 cut(s) 965
BmgT120I GGNCC 1 cut(s) 965
BmiI GGNNCC 2 cut(s) 70, 1357
BmrFI CCNGG 2 cut(s) 669, 1248
BmsI GCATC 3 cut(s) 52, 1159, 1385
BoxI GACNNNNGTC 1 cut(s) 1065
BpiI GAAGAC 1 cut(s) 349
BpmI CTGGAG 1 cut(s) 1104
BpuEI CTTGAG 1 cut(s) 1298
BsaAI YACGTR 2 cut(s) 566, 887
BsaHI GRCGYC 3 cut(s) 630, 729, 1356
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 3 cut(s) 203, 506, 1075
BsaXI ACNNNNNCTCC 4 cut(s) 1080, 1090, 1110, 1120
Bsc4I CCNNNNNNNGG 6 cut(s) 285, 806, 1082, 1115, 1321, 1388
Bse118I RCCGGY 1 cut(s) 1331
Bse1I ACTGG 3 cut(s) 577, 796, 1087
Bse3DI GCAATG 2 cut(s) 405, 750
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 2 cut(s) 669, 1248
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 6 cut(s) 285, 806, 1082, 1115, 1321, 1388
BseMI GCAATG 2 cut(s) 405, 750
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 577, 796, 1087
BseRI GAGGAG 6 cut(s) 20, 23, 26, 29, 453, 1101
BseX3I CGGCCG 1 cut(s) 88
BseXI GCAGC 3 cut(s) 317, 752, 857
Bsh1236I CGCG 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 2 cut(s) 90, 799
BshNI GGYRCC 1 cut(s) 1355
BsiEI CGRYCG 1 cut(s) 91
BsiSI CCGG 4 cut(s) 204, 507, 1076, 1332
BslI CCNNNNNNNGG 6 cut(s) 285, 806, 1082, 1115, 1321, 1388
BsmAI GTCTC 2 cut(s) 286, 995
BsmBI CGTCTC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 116
BsnI GGCC 2 cut(s) 90, 799
Bso31I GGTCTC 1 cut(s) 995
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
BspACI CCGC 5 cut(s) 114, 255, 258, 1353, 1359
BspANI GGCC 2 cut(s) 90, 799
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 70, 1357
BspPI GGATC 4 cut(s) 12, 214, 385, 884
BspQI GCTCTTC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 1355
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 2 cut(s) 405, 750
BsrFI RCCGGY 1 cut(s) 1331
BsrI ACTGG 3 cut(s) 577, 796, 1087
BssAI RCCGGY 1 cut(s) 1331
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
BssNI GRCGYC 3 cut(s) 630, 729, 1356
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 669, 1248
Bst4CI ACNGT 6 cut(s) 226, 900, 925, 1058, 1064, 1259
Bst6I CTCTTC 6 cut(s) 254, 463, 486, 716, 998, 1124
BstACI GRCGYC 3 cut(s) 630, 729, 1356
BstBAI YACGTR 2 cut(s) 566, 887
BstDEI CTNAG 2 cut(s) 58, 656
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 157
BstH2I RGCGCY 2 cut(s) 480, 1359
BstHHI GCGC 2 cut(s) 479, 1358
BstKTI GATC 9 cut(s) 7, 209, 232, 330, 393, 591, 879, 919, 1093
BstMAI GTCTC 2 cut(s) 286, 995
BstMBI GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 6 cut(s) 476, 737, 749, 836, 845, 1295
BstNI CCWGG 2 cut(s) 669, 1248
BstPAI GACNNNNGTC 1 cut(s) 1065
BstSCI CCNGG 2 cut(s) 667, 1246
BstUI CGCG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 317, 752, 857
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 5 cut(s) 4, 206, 229, 876, 916
BstYI RGATCY 5 cut(s) 4, 206, 229, 876, 916
BstZI CGGCCG 1 cut(s) 88
BsuRI GGCC 2 cut(s) 90, 799
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 1080
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 2 cut(s) 479, 1358
Cfr10I RCCGGY 1 cut(s) 1331
Cfr13I GGNCC 1 cut(s) 965
CseI GACGC 3 cut(s) 182, 725, 737
CsiI ACCWGGT 1 cut(s) 1246
Csp6I GTAC 2 cut(s) 760, 894
CviAII CATG 1 cut(s) 285
CviQI GTAC 2 cut(s) 760, 894
DdeI CTNAG 2 cut(s) 58, 656
DinI GGCGCC 1 cut(s) 1357
DpnI GATC 9 cut(s) 6, 208, 231, 329, 392, 590, 878, 918, 1092
DpnII GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
DraI TTTAAA 1 cut(s) 756
EaeI YGGCCR 2 cut(s) 88, 797
EagI CGGCCG 1 cut(s) 88
Eam1104I CTCTTC 6 cut(s) 254, 463, 486, 716, 998, 1124
EarI CTCTTC 6 cut(s) 254, 463, 486, 716, 998, 1124
EciI GGCGGA 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 145
Eco31I GGTCTC 1 cut(s) 995
Eco32I GATATC 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 965
Eco47III AGCGCT 1 cut(s) 478
Eco52I CGGCCG 1 cut(s) 88
Eco72I CACGTG 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 667, 1246
EcoRV GATATC 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 1357
EheI GGCGCC 1 cut(s) 1357
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 1 cut(s) 288
FatI CATG 1 cut(s) 284
FbaI TGATCA 1 cut(s) 588
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 6 cut(s) 258, 306, 741, 846, 1354, 1359
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 6 cut(s) 258, 306, 741, 846, 1354, 1359
FspBI CTAG 1 cut(s) 836
GlaI GCGC 2 cut(s) 478, 1357
GluI GCNGC 6 cut(s) 258, 306, 741, 846, 1354, 1359
GsuI CTGGAG 1 cut(s) 1104
HaeII RGCGCY 2 cut(s) 480, 1359
HaeIII GGCC 2 cut(s) 90, 799
HapII CCGG 4 cut(s) 204, 507, 1076, 1332
HgaI GACGC 3 cut(s) 182, 725, 737
HhaI GCGC 2 cut(s) 479, 1358
Hin1I GRCGYC 3 cut(s) 630, 729, 1356
Hin1II CATG 1 cut(s) 288
Hin6I GCGC 2 cut(s) 477, 1356
HinP1I GCGC 2 cut(s) 477, 1356
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 8 cut(s) 93, 150, 159, 213, 332, 533, 664, 680
HpaII CCGG 4 cut(s) 204, 507, 1076, 1332
HphI GGTGA 5 cut(s) 36, 214, 1178, 1187, 1226
Hpy166II GTNNAC 3 cut(s) 82, 896, 1018
Hpy188III TCNNGA 6 cut(s) 204, 210, 388, 579, 880, 1268
Hpy8I GTNNAC 3 cut(s) 82, 896, 1018
Hpy99I CGWCG 8 cut(s) 104, 176, 719, 731, 805, 876, 976, 1370
HpyAV CCTTC 6 cut(s) 283, 327, 507, 611, 1211, 1315
HpyCH4III ACNGT 6 cut(s) 226, 900, 925, 1058, 1064, 1259
HpyCH4IV ACGT 7 cut(s) 300, 565, 630, 886, 904, 971, 1365
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 6 cut(s) 476, 737, 749, 836, 845, 1295
HpyF3I CTNAG 2 cut(s) 58, 656
HpySE526I ACGT 7 cut(s) 300, 565, 630, 886, 904, 971, 1365
Hsp92I GRCGYC 3 cut(s) 630, 729, 1356
Hsp92II CATG 1 cut(s) 288
HspAI GCGC 2 cut(s) 477, 1356
KasI GGCGCC 1 cut(s) 1355
Kpn2I TCCGGA 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 588
Kzo9I GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
LguI GCTCTTC 1 cut(s) 486
LmnI GCTCC 1 cut(s) 827
Lsp1109I GCAGC 3 cut(s) 317, 752, 857
LweI GCATC 3 cut(s) 52, 1159, 1385
MabI ACCWGGT 1 cut(s) 1246
MaeI CTAG 1 cut(s) 836
MaeII ACGT 7 cut(s) 300, 565, 630, 886, 904, 971, 1365
MalI GATC 9 cut(s) 6, 208, 231, 329, 392, 590, 878, 918, 1092
MboI GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
MflI RGATCY 5 cut(s) 4, 206, 229, 876, 916
Mly113I GGCGCC 1 cut(s) 1356
MlyI GAGTC 2 cut(s) 168, 527
MmeI TCCRAC 8 cut(s) 123, 154, 468, 541, 805, 854, 954, 992
MroI TCCGGA 1 cut(s) 203
MseI TTAA 6 cut(s) 450, 473, 705, 755, 866, 1417
MslI CAYNNNNRTG 1 cut(s) 1056
MspI CCGG 4 cut(s) 204, 507, 1076, 1332
MspR9I CCNGG 2 cut(s) 669, 1248
Mva1269I GAATGC 1 cut(s) 116
MvaI CCWGG 2 cut(s) 669, 1248
MvnI CGCG 1 cut(s) 157
MwoI GCNNNNNNNGC 6 cut(s) 476, 737, 749, 836, 845, 1295
NarI GGCGCC 1 cut(s) 1356
NdeII GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
NlaIII CATG 1 cut(s) 288
NlaIV GGNNCC 2 cut(s) 70, 1357
NmuCI GTSAC 4 cut(s) 220, 781, 1058, 1078
PciSI GCTCTTC 1 cut(s) 486
PcsI WCGNNNNNNNCGW 3 cut(s) 357, 723, 768
PctI GAATGC 1 cut(s) 116
PfeI GAWTC 6 cut(s) 93, 150, 213, 332, 664, 680
PfoI TCCNGGA 1 cut(s) 667
PkrI GCNGC 6 cut(s) 259, 307, 742, 847, 1355, 1360
PleI GAGTC 2 cut(s) 167, 527
PluTI GGCGCC 1 cut(s) 1359
PmaCI CACGTG 1 cut(s) 887
PmlI CACGTG 1 cut(s) 887
PpsI GAGTC 2 cut(s) 167, 527
Ppu21I YACGTR 2 cut(s) 566, 887
PshAI GACNNNNGTC 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 667, 1246
PspCI CACGTG 1 cut(s) 887
PspGI CCWGG 2 cut(s) 667, 1246
PspN4I GGNNCC 2 cut(s) 70, 1357
PspPI GGNCC 1 cut(s) 965
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 5 cut(s) 4, 206, 229, 876, 916
RsaI GTAC 2 cut(s) 761, 895
RsaNI GTAC 2 cut(s) 760, 894
RseI CAYNNNNRTG 1 cut(s) 1056
SapI GCTCTTC 1 cut(s) 486
SaqAI TTAA 6 cut(s) 450, 473, 705, 755, 866, 1417
SatI GCNGC 6 cut(s) 258, 306, 741, 846, 1354, 1359
Sau3AI GATC 9 cut(s) 4, 206, 229, 327, 390, 588, 876, 916, 1090
Sau96I GGNCC 1 cut(s) 965
SchI GAGTC 2 cut(s) 168, 527
ScrFI CCNGG 2 cut(s) 669, 1248
SexAI ACCWGGT 1 cut(s) 1246
SfaNI GCATC 3 cut(s) 52, 1159, 1385
SfoI GGCGCC 1 cut(s) 1357
SinI GGWCC 1 cut(s) 965
SmiMI CAYNNNNRTG 1 cut(s) 1056
SmlI CTYRAG 1 cut(s) 1277
SmoI CTYRAG 1 cut(s) 1277
SsiI CCGC 5 cut(s) 114, 255, 258, 1353, 1359
SspDI GGCGCC 1 cut(s) 1355
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 2 cut(s) 667, 1246
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 6 cut(s) 226, 900, 925, 1058, 1064, 1259
TaiI ACGT 7 cut(s) 303, 568, 633, 889, 907, 974, 1368
TaqI TCGA 7 cut(s) 171, 330, 714, 726, 771, 803, 1127
TauI GCSGC 3 cut(s) 260, 1356, 1361
TfiI GAWTC 6 cut(s) 93, 150, 213, 332, 664, 680
Tru1I TTAA 6 cut(s) 450, 473, 705, 755, 866, 1417
Tru9I TTAA 6 cut(s) 450, 473, 705, 755, 866, 1417
TscAI CASTG 1 cut(s) 1087
TseFI GTSAC 4 cut(s) 220, 781, 1058, 1078
TseI GCWGC 3 cut(s) 305, 740, 845
Tsp45I GTSAC 4 cut(s) 220, 781, 1058, 1078
TspDTI ATGAA 2 cut(s) 630, 834
TspGWI ACGGA 3 cut(s) 800, 860, 873
TspRI CASTG 1 cut(s) 1087
VpaK11BI GGWCC 1 cut(s) 965
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 1 cut(s) 836
ZraI GACGTC 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.