AT2G06530

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016118
Physical Location & Seq
Reverse (-)
2588523 .. 2590531
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G06530.1

Sequence Viewer

Length: 678 bp
ATGATGAATTCAATCTTCGGAAAGCGAAAAACTCCCGCAGAACTTCTGCGGGAGAACAAGCGGATGCTGGATAAGTCTATCAGAGAGATAGAGAGGGAGAGACAAGGCCTACAAACACAAGAAAAGAAACTCATTAACGAGATTAAAAAGACCGCAAAGCAAGGCCAAATGGGAGCTGTTAAAGTGATGGCAAAGGATCTTATAAGAACGCGGCACCAGATTGAGAAGTTTTACAAGCTTAAATCTCAACTTCAAGGTGTATCTCTCAGGATCCAGACTCTGAAATCTACACAAGCGATGGGTGAGGCGATGAAAGGTGTGACTAAAGCAATGGGGCAAATGAACAGGCAGATGAACCTTCCATCTCTGCAGAAAATCATGCAAGAATTTGAGAGGCAGAACGAGAAAATGGAGATGGTGTCTGAGGTTATGGGAGATGCTATTGATGATGCTTTGGAAGGAGATGAGGAAGAAGAAGAGACTGAAGATCTTGTTAGCCAAGTCCTTGACGAGATCGGTATCGACATCAACCAAGAGCTGGTGAATGCTCCATCTGGTGCGGTCGCAGTACCCGCAGCAAAGAACAAGGTGGTACAAGCTGAGGCGACCGGAGCTGAGGACAGTGGAGGTATAGATAGTGACCTTCAAGCAAGGTTGGATAACCTTAGAAAAATGTGA

Protein Analysis

225

Amino Acids

25.29

Weight (kDa)

5.54

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 18 - 187 4.9e-50 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016118)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06530 AT2G06530
fragaria_vesca FvH4_1g08240
malus_domestica MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica Prupe.7G203100_v2.0.a1
pyrus_communis pycom02g06980 pycom15g19010
rosa_chinensis RchiOBHm_Chr2g0094291
rosa_laevigata RLG00000016474
rosa_multiflora Rmu_sc0003819.1_g000027
rosa_roxburghii Rroxscaffold_2G00147290
rosa_rugosa Rorug02G0042800
rosa_samantha Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 538
AccII CGCG 1 cut(s) 211
AciI CCGC 7 cut(s) 36, 49, 61, 153, 211, 560, 573
AclWI GGATC 3 cut(s) 204, 265, 278
AcsI RAATTY 2 cut(s) 7, 386
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 2 cut(s) 570, 594
AfiI CCNNNNNNNGG 1 cut(s) 538
AgsI TTSAA 3 cut(s) 12, 254, 647
AluBI AGCT 5 cut(s) 176, 238, 538, 599, 614
AluI AGCT 5 cut(s) 176, 238, 538, 599, 614
Alw26I GTCTC 2 cut(s) 94, 473
AlwI GGATC 3 cut(s) 204, 265, 278
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 2 cut(s) 106, 163
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 2 cut(s) 7, 386
AsuHPI GGTGA 2 cut(s) 314, 553
BamHI GGATCC 1 cut(s) 270
BanI GGYRCC 1 cut(s) 213
BbvCI CCTCAGC 2 cut(s) 600, 615
BbvI GCAGC 1 cut(s) 587
BccI CCATC 5 cut(s) 181, 292, 370, 409, 559
BcoDI GTCTC 2 cut(s) 94, 473
BfmI CTRYAG 1 cut(s) 368
BglII AGATCT 1 cut(s) 487
BisI GCNGC 2 cut(s) 212, 576
BlsI GCNGC 2 cut(s) 213, 577
BmiI GGNNCC 2 cut(s) 215, 272
BmsI GCATC 3 cut(s) 54, 427, 439
Bpu10I CCTNAGC 2 cut(s) 600, 615
BsaBI GATNNNNATC 1 cut(s) 518
BsaWI WCCGGW 1 cut(s) 608
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 538
Bse3DI GCAATG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 518
BseGI GGATG 1 cut(s) 69
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 280, 414, 591, 606
BseXI GCAGC 1 cut(s) 587
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 2 cut(s) 564, 609
BshFI GGCC 2 cut(s) 108, 165
BshNI GGYRCC 1 cut(s) 213
BsiEI CGRYCG 2 cut(s) 564, 609
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 538
BsmAI GTCTC 2 cut(s) 94, 473
BsmI GAATGC 1 cut(s) 550
BsnI GGCC 2 cut(s) 108, 165
Bsp143I GATC 4 cut(s) 196, 270, 487, 513
BspACI CCGC 7 cut(s) 36, 49, 61, 153, 211, 560, 573
BspANI GGCC 2 cut(s) 108, 165
BspCNI CTCAG 4 cut(s) 279, 415, 592, 607
BspFNI CGCG 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 215, 272
BspMAI CTGCAG 1 cut(s) 372
BspPI GGATC 3 cut(s) 204, 265, 278
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 336
BssMI GATC 4 cut(s) 196, 270, 487, 513
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 471
BstDEI CTNAG 5 cut(s) 266, 423, 600, 615, 665
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 4 cut(s) 199, 273, 490, 516
BstMAI GTCTC 2 cut(s) 94, 473
BstMBI GATC 4 cut(s) 196, 270, 487, 513
BstMCI CGRYCG 2 cut(s) 564, 609
BstMWI GCNNNNNNNGC 2 cut(s) 572, 611
BstSFI CTRYAG 1 cut(s) 368
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 3 cut(s) 196, 270, 487
BstYI RGATCY 3 cut(s) 196, 270, 487
BsuRI GGCC 2 cut(s) 108, 165
BtgZI GCGATG 2 cut(s) 311, 323
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 628
CaiI CAGNNNCTG 1 cut(s) 280
Csp6I GTAC 2 cut(s) 569, 593
CviAII CATG 1 cut(s) 379
CviJI RGCY 8 cut(s) 108, 165, 176, 238, 498, 538, 599, 614
CviKI_1 RGCY 8 cut(s) 108, 165, 176, 238, 498, 538, 599, 614
CviQI GTAC 2 cut(s) 569, 593
DdeI CTNAG 5 cut(s) 266, 423, 600, 615, 665
DpnI GATC 4 cut(s) 198, 272, 489, 515
DpnII GATC 4 cut(s) 196, 270, 487, 513
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 504
EcoRI GAATTC 1 cut(s) 7
FaeI CATG 1 cut(s) 382
FaiI YATR 4 cut(s) 203, 380, 431, 632
FatI CATG 1 cut(s) 378
FauI CCCGC 3 cut(s) 42, 43, 580
Fnu4HI GCNGC 2 cut(s) 212, 576
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 212, 576
GluI GCNGC 2 cut(s) 212, 576
HaeIII GGCC 2 cut(s) 108, 165
HapII CCGG 1 cut(s) 609
Hin1II CATG 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 609
HphI GGTGA 2 cut(s) 314, 553
Hpy188I TCNGA 4 cut(s) 20, 83, 282, 424
Hpy188III TCNNGA 2 cut(s) 268, 274
HpyAV CCTTC 3 cut(s) 368, 452, 653
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4V TGCA 2 cut(s) 370, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 611
HpyF3I CTNAG 5 cut(s) 266, 423, 600, 615, 665
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 4 cut(s) 196, 270, 487, 513
LmnI GCTCC 3 cut(s) 173, 553, 611
LpnPI CCDG 8 cut(s) 53, 230, 253, 287, 331, 524, 540, 622
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 3 cut(s) 54, 427, 439
MaeIII GTNAC 2 cut(s) 319, 638
MalI GATC 4 cut(s) 198, 272, 489, 515
MboI GATC 4 cut(s) 196, 270, 487, 513
MboII GAAGA 5 cut(s) 7, 482, 485, 488, 497
MflI RGATCY 3 cut(s) 196, 270, 487
MluCI AATT 2 cut(s) 7, 386
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 1 cut(s) 636
MnlI CCTC 8 cut(s) 87, 298, 387, 418, 460, 595, 610, 620
MseI TTAA 4 cut(s) 135, 144, 180, 240
MspI CCGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 550
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 572, 611
NdeII GATC 4 cut(s) 196, 270, 487, 513
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 215, 272
NmuCI GTSAC 2 cut(s) 319, 638
PceI AGGCCT 1 cut(s) 108
PctI GAATGC 1 cut(s) 550
PflMI CCANNNNNTGG 1 cut(s) 538
PkrI GCNGC 2 cut(s) 213, 577
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 215, 272
PstI CTGCAG 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 280
PsuI RGATCY 3 cut(s) 196, 270, 487
RsaI GTAC 2 cut(s) 570, 594
RsaNI GTAC 2 cut(s) 569, 593
SaqAI TTAA 4 cut(s) 135, 144, 180, 240
SatI GCNGC 2 cut(s) 212, 576
Sau3AI GATC 4 cut(s) 196, 270, 487, 513
SchI GAGTC 1 cut(s) 271
SfaNI GCATC 3 cut(s) 54, 427, 439
SfcI CTRYAG 1 cut(s) 368
Sse9I AATT 2 cut(s) 7, 386
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 7 cut(s) 36, 49, 61, 153, 211, 560, 573
StuI AGGCCT 1 cut(s) 108
TaaI ACNGT 1 cut(s) 623
TaqI TCGA 1 cut(s) 522
TasI AATT 2 cut(s) 7, 386
TauI GCSGC 1 cut(s) 214
Tru1I TTAA 4 cut(s) 135, 144, 180, 240
Tru9I TTAA 4 cut(s) 135, 144, 180, 240
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 2 cut(s) 319, 638
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 319, 638
TspDTI ATGAA 4 cut(s) 20, 326, 356, 368
TspRI CASTG 1 cut(s) 628
Van91I CCANNNNNTGG 1 cut(s) 538
XapI RAATTY 2 cut(s) 7, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.