Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016118

Physical Location & Seq

Genomic Coordinates Forward (+)

7064704 .. 7068127

Gene Structure 3424 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG090400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTTGGATAAATCTATTAGAGAAATAGAGAGGGAGAGAGGATCCCTCCAGACGCAAGAGAAGAAACTGATTCAAGAGATTAAGAAGAGTGCTAAGCAAGGGCAGATGGGAGCTGTCAGAGTTATGGCAAAAGACCTTGTTCGAACACGGCACCAGATTGAAAAGTTTTATAAGCTCAAGTCACAACTCCAGGGTGTATCTCTCAGAATCCAGACACTGAAATCAACTCAAGCGATGGGAGAGGCAATGAAGGGGGTGACAAAGGCAATGGGCCAGATGAATAGACAGATGAACTTGCCATCACTGCAGAAAATTATGCAAGAATTTGAGAGGCAGAATGAGAAGATGGAATTGACAACTGAGGTGATGGGAGATGCCATTGATGATGCTTTGGAAGGAGACGAGGAAGAGGAGGAAACAGACGACCTAGTTAACCAAGTTCTTGATGAAATTGGTATAACCGTCAATCAAGAGCTTGTTAATGCGCCATCAGCCTCTGTGGCTGCACCAGCTGCAAAGGGCAAGGTTGCACAAGTGGAAGCAGCTGCGACCGATGATGGTGGGATAGATAGTGATTTACAGGCGAGGCTAGACAATTTAAGAAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

203

Amino Acids

22.63

Weight (kDa)

5.09

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	2 - 166	1.5e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06530 AT2G06530
fragaria_vesca	FvH4_1g08240
malus_domestica	MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica	Prupe.7G203100_v2.0.a1
pyrus_communis	pycom02g06980 pycom15g19010
rosa_chinensis	RchiOBHm_Chr2g0094291
rosa_laevigata	RLG00000016474
rosa_multiflora	Rmu_sc0003819.1_g000027
rosa_roxburghii	Rroxscaffold_2G00147290
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	150
AclWI	GGATC	2 cut(s)	36, 49
AcsI	RAATTY	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	74, 161
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	5 cut(s)	113, 175, 475, 512, 545
AluI	AGCT	5 cut(s)	113, 175, 475, 512, 545
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	36, 49
AlwNI	CAGNNNCTG	2 cut(s)	217, 497
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	503, 512, 542, 545
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	268, 376
AsuII	TTCGAA	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	490, 499, 532, 554
BccI	CCATC	7 cut(s)	100, 229, 307, 340, 361, 496, 551
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	1 cut(s)	393
BfaI	CTAG	2 cut(s)	428, 590
BfmI	CTRYAG	1 cut(s)	305
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	4 cut(s)	504, 513, 543, 546
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	505, 514, 544, 547
Bme1390I	CCNGG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	43, 152
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	2 cut(s)	364, 376
BplI	GAGNNNNNCTC	2 cut(s)	30, 62
BpmI	CTGGAG	2 cut(s)	32, 173
Bpu1102I	GCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	2 cut(s)	161, 213
BsaJI	CCNNGG	1 cut(s)	190
Bse3DI	GCAATG	2 cut(s)	252, 273
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	612
BseMI	GCAATG	2 cut(s)	252, 273
BseMII	CTCAG	2 cut(s)	217, 351
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	490, 499, 532, 554
BsgI	GTGCAG	1 cut(s)	489
Bsh1285I	CGRYCG	1 cut(s)	552
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	150
BsiEI	CGRYCG	1 cut(s)	552
BsmAI	GTCTC	1 cut(s)	393
BsmBI	CGTCTC	1 cut(s)	393
BsnI	GGCC	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	41
Bsp1720I	GCTNAGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	216, 352
BspLI	GGNNCC	2 cut(s)	43, 152
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	2 cut(s)	36, 49
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	150
BsrDI	GCAATG	2 cut(s)	252, 273
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	2 cut(s)	80, 402
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	93, 203, 360
BstF5I	GGATG	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	487
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	1 cut(s)	41
BstMCI	CGRYCG	1 cut(s)	552
BstMWI	GCNNNNNNNGC	5 cut(s)	304, 491, 500, 509, 512
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	4 cut(s)	490, 499, 532, 554
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	612
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	215, 302
CaiI	CAGNNNCTG	2 cut(s)	217, 497
CfoI	GCGC	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	61
CviJI	RGCY	9 cut(s)	113, 175, 273, 475, 494, 503, 512, 545, 589
CviKI_1	RGCY	9 cut(s)	113, 175, 273, 475, 494, 503, 512, 545, 589
DdeI	CTNAG	3 cut(s)	93, 203, 360
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	80, 402
EarI	CTCTTC	2 cut(s)	80, 402
EcoRII	CCWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	393
FaiI	YATR	4 cut(s)	125, 171, 317, 458
Fnu4HI	GCNGC	4 cut(s)	504, 513, 543, 546
Fsp4HI	GCNGC	4 cut(s)	504, 513, 543, 546
FspBI	CTAG	2 cut(s)	428, 590
GlaI	GCGC	1 cut(s)	486
GluI	GCNGC	4 cut(s)	504, 513, 543, 546
GsuI	CTGGAG	2 cut(s)	32, 173
HaeIII	GGCC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	485
HinP1I	GCGC	1 cut(s)	485
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HinfI	GANTC	2 cut(s)	70, 207
HpaI	GTTAAC	1 cut(s)	433
HphI	GGTGA	2 cut(s)	268, 376
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	119, 206
Hpy188III	TCNNGA	5 cut(s)	49, 74, 211, 443, 470
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	3 cut(s)	244, 389, 597
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	5 cut(s)	307, 319, 506, 515, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	304, 491, 500, 509, 512
HpyF3I	CTNAG	3 cut(s)	93, 203, 360
HspAI	GCGC	1 cut(s)	485
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	8 cut(s)	62, 167, 176, 203, 224, 287, 522, 566
Lsp1109I	GCAGC	4 cut(s)	490, 499, 532, 554
LweI	GCATC	2 cut(s)	364, 376
MaeI	CTAG	2 cut(s)	428, 590
MaeIII	GTNAC	2 cut(s)	180, 256
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	4 cut(s)	73, 97, 355, 419
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	5 cut(s)	312, 323, 350, 450, 595
MseI	TTAA	4 cut(s)	81, 432, 480, 599
MspA1I	CMGCKG	2 cut(s)	512, 545
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	5 cut(s)	304, 491, 500, 509, 512
NdeII	GATC	1 cut(s)	41
NlaIV	GGNNCC	2 cut(s)	43, 152
NmuCI	GTSAC	2 cut(s)	180, 256
NspV	TTCGAA	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	70, 207
PkrI	GCNGC	4 cut(s)	505, 514, 544, 547
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	43, 152
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	309
PstNI	CAGNNNCTG	2 cut(s)	217, 497
PsuI	RGATCY	1 cut(s)	41
PvuII	CAGCTG	2 cut(s)	512, 545
SaqAI	TTAA	4 cut(s)	81, 432, 480, 599
SatI	GCNGC	4 cut(s)	504, 513, 543, 546
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	9 cut(s)	115, 138, 177, 366, 429, 477, 514, 528, 547
SfaNI	GCATC	2 cut(s)	364, 376
SfcI	CTRYAG	1 cut(s)	305
SfuI	TTCGAA	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	176, 228
SmoI	CTYRAG	2 cut(s)	176, 228
Sse9I	AATT	5 cut(s)	312, 323, 350, 450, 595
SspMI	CTAG	2 cut(s)	428, 590
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	142
TaqII	GACCGA	1 cut(s)	566
TasI	AATT	5 cut(s)	312, 323, 350, 450, 595
TfiI	GAWTC	2 cut(s)	70, 207
Tru1I	TTAA	4 cut(s)	81, 432, 480, 599
Tru9I	TTAA	4 cut(s)	81, 432, 480, 599
TscAI	CASTG	2 cut(s)	222, 309
TseFI	GTSAC	2 cut(s)	180, 256
TseI	GCWGC	4 cut(s)	503, 512, 542, 545
Tsp45I	GTSAC	2 cut(s)	180, 256
TspDTI	ATGAA	4 cut(s)	263, 293, 305, 462
TspRI	CASTG	2 cut(s)	222, 309
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	428, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.