Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016118

Physical Location & Seq

Genomic Coordinates Forward (+)

4367157 .. 4368761

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTGGATAAATCTATTAGGGAAATAGAGAGGGAGAGAGGATCGCTTCAGGCGCAAGAGAAGAAACTGATTGCGGAGATTAAAAAGAGTGCTAAGCAAGGCCAGATGGGAGCTGTCAGAGTTATGGCAAAAGACCTGGTTCGAACACGGCACCAGATTGAAAAGTTTTATAAGCTTAAGTCACAACTGCAGGGTGTATCTCTCAGAATCCAGACACTGAAATCAACTCAAGCGATGGGAGAGGCAATGAAGGGGGTGACAAAGGCAATGGGCCAGATGAATAGACAGATGAACTTGCCATCACTACAGAAAATTATGCAAGAATTTGAGAGGCAAAACGAGAAGATGGAATTGACAACTGAGGTGATGGGAGATGCAATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAGGAAACAGACGACCTAGTTAACCAAGTTCTTGATGAAATTGGTATAACTGTCAATCAAGAGCTTGTTAATGCACCATCAGCCTCTGTGGCTGCACCAGCTGCAAGGGGCAAGGTTGCACAAGTGGAAGCAGCTGCACCTGATGACGGTGGGATAGATAGCGATTTACAGGCAAGGCTAGACAATTTGAGAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

204

Amino Acids

22.54

Weight (kDa)

5.09

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	2 - 166	3.3e-47	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06530 AT2G06530
fragaria_vesca	FvH4_1g08240
malus_domestica	MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica	Prupe.7G203100_v2.0.a1
pyrus_communis	pycom02g06980 pycom15g19010
rosa_chinensis	RchiOBHm_Chr2g0094291
rosa_laevigata	RLG00000016474
rosa_multiflora	Rmu_sc0003819.1_g000027
rosa_roxburghii	Rroxscaffold_2G00147290
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	150
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflII	CTTAAG	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	161
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	5 cut(s)	113, 175, 475, 512, 545
AluI	AGCT	5 cut(s)	113, 175, 475, 512, 545
AlwI	GGATC	1 cut(s)	49
AlwNI	CAGNNNCTG	2 cut(s)	217, 497
AoxI	GGCC	2 cut(s)	100, 271
ApeKI	GCWGC	4 cut(s)	503, 512, 542, 545
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	268, 376
AsuII	TTCGAA	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	150
BbvI	GCAGC	4 cut(s)	490, 499, 532, 554
BccI	CCATC	6 cut(s)	100, 229, 307, 340, 361, 496
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	137
BfaI	CTAG	2 cut(s)	428, 590
BfmI	CTRYAG	2 cut(s)	188, 305
BfrI	CTTAAG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	4 cut(s)	504, 513, 543, 546
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	4 cut(s)	505, 514, 544, 547
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	364, 376
Bpu1102I	GCTNAGC	1 cut(s)	93
Bpu14I	TTCGAA	1 cut(s)	142
BpuEI	CTTGAG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse3DI	GCAATG	2 cut(s)	252, 273
BseBI	CCWGG	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	2 cut(s)	252, 273
BseMII	CTCAG	2 cut(s)	217, 351
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	4 cut(s)	490, 499, 532, 554
BsgI	GTGCAG	2 cut(s)	489, 531
BshFI	GGCC	2 cut(s)	102, 273
BshNI	GGYRCC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	557
BsnI	GGCC	2 cut(s)	102, 273
Bsp119I	TTCGAA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	41
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	102, 273
BspCNI	CTCAG	2 cut(s)	216, 352
BspLI	GGNNCC	1 cut(s)	152
BspMAI	CTGCAG	1 cut(s)	192
BspPI	GGATC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	142
BspT107I	GGYRCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	252, 273
BssMI	GATC	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	2 cut(s)	463, 560
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	93, 203, 360
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	5 cut(s)	52, 491, 500, 509, 512
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	2 cut(s)	188, 305
BstV1I	GCAGC	4 cut(s)	490, 499, 532, 554
BsuRI	GGCC	2 cut(s)	102, 273
BtgZI	GCGATG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	215
CaiI	CAGNNNCTG	2 cut(s)	217, 497
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	93, 203, 360
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	135
FaiI	YATR	4 cut(s)	125, 171, 317, 458
Fnu4HI	GCNGC	4 cut(s)	504, 513, 543, 546
Fsp4HI	GCNGC	4 cut(s)	504, 513, 543, 546
FspBI	CTAG	2 cut(s)	428, 590
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	4 cut(s)	504, 513, 543, 546
HaeIII	GGCC	2 cut(s)	102, 273
HhaI	GCGC	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	207
HpaI	GTTAAC	1 cut(s)	433
HphI	GGTGA	2 cut(s)	268, 376
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	119, 206
Hpy188III	TCNNGA	3 cut(s)	211, 443, 470
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	244, 389
HpyCH4III	ACNGT	2 cut(s)	463, 560
HpyCH4V	TGCA	8 cut(s)	190, 319, 377, 485, 506, 515, 530, 548
HpyF10VI	GCNNNNNNNGC	5 cut(s)	52, 491, 500, 509, 512
HpyF3I	CTNAG	3 cut(s)	93, 203, 360
HspAI	GCGC	1 cut(s)	53
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	4 cut(s)	490, 499, 532, 554
LweI	GCATC	2 cut(s)	364, 376
MabI	ACCWGGT	1 cut(s)	135
MaeI	CTAG	2 cut(s)	428, 590
MaeIII	GTNAC	2 cut(s)	180, 256
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	3 cut(s)	73, 355, 419
MfeI	CAATTG	1 cut(s)	378
MluCI	AATT	6 cut(s)	312, 323, 350, 378, 450, 595
MnlI	CCTC	9 cut(s)	24, 32, 235, 324, 355, 397, 403, 406, 505
MseI	TTAA	4 cut(s)	81, 177, 432, 480
MspA1I	CMGCKG	2 cut(s)	512, 545
MspCI	CTTAAG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	5 cut(s)	52, 491, 500, 509, 512
NdeII	GATC	1 cut(s)	41
NlaIV	GGNNCC	1 cut(s)	152
NmuCI	GTSAC	2 cut(s)	180, 256
NspV	TTCGAA	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	505, 514, 544, 547
PsiI	TTATAA	1 cut(s)	171
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	152
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	192
PstNI	CAGNNNCTG	2 cut(s)	217, 497
PvuII	CAGCTG	2 cut(s)	512, 545
SaqAI	TTAA	4 cut(s)	81, 177, 432, 480
SatI	GCNGC	4 cut(s)	504, 513, 543, 546
Sau3AI	GATC	1 cut(s)	41
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	137
SexAI	ACCWGGT	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	364, 376
SfcI	CTRYAG	2 cut(s)	188, 305
SfuI	TTCGAA	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	176, 228
SmoI	CTYRAG	2 cut(s)	176, 228
Sse9I	AATT	6 cut(s)	312, 323, 350, 378, 450, 595
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	428, 590
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	463, 560
TaqI	TCGA	1 cut(s)	142
TasI	AATT	6 cut(s)	312, 323, 350, 378, 450, 595
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	4 cut(s)	81, 177, 432, 480
Tru9I	TTAA	4 cut(s)	81, 177, 432, 480
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	2 cut(s)	180, 256
TseI	GCWGC	4 cut(s)	503, 512, 542, 545
Tsp45I	GTSAC	2 cut(s)	180, 256
TspDTI	ATGAA	4 cut(s)	263, 293, 305, 462
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	2 cut(s)	428, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.