Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016118

Physical Location & Seq

Genomic Coordinates Forward (+)

6970570 .. 6972330

Gene Structure 1761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016474

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGTTTCATCTTCGGCAAGCGCAAAACCCCTGCAGAACTCCTGCGGGAAAATAAGAGAATGCTGGATAAATCTATTAGGGAAATAGAGAGGGAGAGAGGATCCCTCCAGACGCAAGAGAAGAAACTGATTCAAGAGATTAAGAAGAGTGCTAAGCAAGGGCAGATGGGTGCTGTCAGAGTTATGGCAAAAGACCTTGTTCGAACACGGCACCAGATTGAAAAGTTTTATAAGCTCAAGTCACAACTCCAGGGTGTATCTCTCAGAATCCAGACACTGAAATCAACTCAAGCGATGGGAGAGGCAATGAAGGGGGTGACAAAGGCAATGGGCCAGATGAATAGACAGATGAACTTGCCATCACTGCAGAAAATTATGCAAGAATTTGAGAGGCAGAATGAGAAGATGGAATTGACAACTGAGGTGATGGGAGATGCCATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAGGAAACAGACGACCTAGTTAACCAAGTTCTTGATGAAATTGGTATAACCGTCAATCAAGAGCTTGTTAATGCGCCATCAGCCTCTGTGGCTGCACCAGCTGCAAAGGGCAAGGTTGCACAAGTGGAAGCAGCTGCGACCGATGATGGTGGGATAGATAGTGATTTACAGGCGAGGCTAGACAATTTAAGAAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

224

Amino Acids

25.04

Weight (kDa)

5.74

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	17 - 186	3e-48	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06530 AT2G06530
fragaria_vesca	FvH4_1g08240
malus_domestica	MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica	Prupe.7G203100_v2.0.a1
pyrus_communis	pycom02g06980 pycom15g19010
rosa_chinensis	RchiOBHm_Chr2g0094291
rosa_laevigata	RLG00000016474
rosa_multiflora	Rmu_sc0003819.1_g000027
rosa_roxburghii	Rroxscaffold_2G00147290
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	210
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	96, 109
AcsI	RAATTY	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	134, 221
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	4 cut(s)	235, 535, 572, 605
AluI	AGCT	4 cut(s)	235, 535, 572, 605
AlwI	GGATC	2 cut(s)	96, 109
AlwNI	CAGNNNCTG	2 cut(s)	277, 557
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	563, 572, 602, 605
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	24, 547
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	328, 436
AsuII	TTCGAA	1 cut(s)	202
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	550, 559, 592, 614
BccI	CCATC	7 cut(s)	160, 289, 367, 400, 421, 556, 611
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	251
BfaI	CTAG	2 cut(s)	488, 650
BfmI	CTRYAG	2 cut(s)	33, 365
BglI	GCCNNNNNGGC	1 cut(s)	560
BisI	GCNGC	4 cut(s)	564, 573, 603, 606
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	4 cut(s)	565, 574, 604, 607
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	103, 212
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	424, 436
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	2 cut(s)	92, 233
Bpu1102I	GCTNAGC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	2 cut(s)	221, 273
BsaJI	CCNNGG	1 cut(s)	250
Bse3DI	GCAATG	2 cut(s)	312, 333
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	672
BseMI	GCAATG	2 cut(s)	312, 333
BseMII	CTCAG	2 cut(s)	277, 411
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	4 cut(s)	550, 559, 592, 614
BsgI	GTGCAG	1 cut(s)	549
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	101
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	276, 412
BspLI	GGNNCC	2 cut(s)	103, 212
BspMAI	CTGCAG	2 cut(s)	37, 369
BspPI	GGATC	2 cut(s)	96, 109
BspT104I	TTCGAA	1 cut(s)	202
BspT107I	GGYRCC	1 cut(s)	210
BsrDI	GCAATG	2 cut(s)	312, 333
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	523
Bst6I	CTCTTC	2 cut(s)	140, 462
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	153, 263, 420
BstF5I	GGATG	1 cut(s)	672
BstHHI	GCGC	2 cut(s)	24, 547
BstKTI	GATC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	101
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	5 cut(s)	364, 551, 560, 569, 572
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	2 cut(s)	33, 365
BstV1I	GCAGC	4 cut(s)	550, 559, 592, 614
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	308
BtsCI	GGATG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	275, 362
Cac8I	GCNNGC	1 cut(s)	20
CaiI	CAGNNNCTG	2 cut(s)	277, 557
CfoI	GCGC	2 cut(s)	24, 547
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	121
CviJI	RGCY	8 cut(s)	235, 333, 535, 554, 563, 572, 605, 649
CviKI_1	RGCY	8 cut(s)	235, 333, 535, 554, 563, 572, 605, 649
DdeI	CTNAG	3 cut(s)	153, 263, 420
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
Eam1104I	CTCTTC	2 cut(s)	140, 462
EarI	CTCTTC	2 cut(s)	140, 462
EcoRII	CCWGG	1 cut(s)	249
FaiI	YATR	4 cut(s)	185, 231, 377, 518
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	4 cut(s)	564, 573, 603, 606
Fsp4HI	GCNGC	4 cut(s)	564, 573, 603, 606
FspBI	CTAG	2 cut(s)	488, 650
GlaI	GCGC	2 cut(s)	23, 546
GluI	GCNGC	4 cut(s)	564, 573, 603, 606
GsuI	CTGGAG	2 cut(s)	92, 233
HaeIII	GGCC	1 cut(s)	333
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	2 cut(s)	24, 547
Hin6I	GCGC	2 cut(s)	22, 545
HinP1I	GCGC	2 cut(s)	22, 545
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	130, 267
HpaI	GTTAAC	1 cut(s)	493
HphI	GGTGA	2 cut(s)	328, 436
Hpy166II	GTNNAC	1 cut(s)	493
Hpy188I	TCNGA	2 cut(s)	179, 266
Hpy188III	TCNNGA	5 cut(s)	109, 134, 271, 503, 530
Hpy8I	GTNNAC	1 cut(s)	493
HpyAV	CCTTC	3 cut(s)	304, 449, 657
HpyCH4III	ACNGT	1 cut(s)	523
HpyCH4V	TGCA	6 cut(s)	35, 367, 379, 566, 575, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	364, 551, 560, 569, 572
HpyF3I	CTNAG	3 cut(s)	153, 263, 420
HspAI	GCGC	2 cut(s)	22, 545
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	1 cut(s)	101
Lsp1109I	GCAGC	4 cut(s)	550, 559, 592, 614
LweI	GCATC	2 cut(s)	424, 436
MaeI	CTAG	2 cut(s)	488, 650
MaeIII	GTNAC	2 cut(s)	240, 316
MalI	GATC	1 cut(s)	103
MboI	GATC	1 cut(s)	101
MboII	GAAGA	5 cut(s)	4, 133, 157, 415, 479
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	5 cut(s)	372, 383, 410, 510, 655
MseI	TTAA	4 cut(s)	141, 492, 540, 659
MspA1I	CMGCKG	2 cut(s)	572, 605
MspR9I	CCNGG	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	364, 551, 560, 569, 572
NdeII	GATC	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	103, 212
NmuCI	GTSAC	2 cut(s)	240, 316
NspV	TTCGAA	1 cut(s)	202
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	130, 267
PkrI	GCNGC	4 cut(s)	565, 574, 604, 607
PsiI	TTATAA	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	103, 212
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	2 cut(s)	37, 369
PstNI	CAGNNNCTG	2 cut(s)	277, 557
PsuI	RGATCY	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	572, 605
SaqAI	TTAA	4 cut(s)	141, 492, 540, 659
SatI	GCNGC	4 cut(s)	564, 573, 603, 606
Sau3AI	GATC	1 cut(s)	101
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	8 cut(s)	198, 237, 426, 489, 537, 574, 588, 607
SfaNI	GCATC	2 cut(s)	424, 436
SfcI	CTRYAG	2 cut(s)	33, 365
SfuI	TTCGAA	1 cut(s)	202
SmlI	CTYRAG	2 cut(s)	236, 288
SmoI	CTYRAG	2 cut(s)	236, 288
Sse9I	AATT	5 cut(s)	372, 383, 410, 510, 655
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	2 cut(s)	488, 650
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	202
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	5 cut(s)	372, 383, 410, 510, 655
TfiI	GAWTC	2 cut(s)	130, 267
Tru1I	TTAA	4 cut(s)	141, 492, 540, 659
Tru9I	TTAA	4 cut(s)	141, 492, 540, 659
TscAI	CASTG	2 cut(s)	282, 369
TseFI	GTSAC	2 cut(s)	240, 316
TseI	GCWGC	4 cut(s)	563, 572, 602, 605
Tsp45I	GTSAC	2 cut(s)	240, 316
TspDTI	ATGAA	4 cut(s)	323, 353, 365, 522
TspRI	CASTG	2 cut(s)	282, 369
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	488, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.