Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016118

Physical Location & Seq

Genomic Coordinates Forward (+)

13484277 .. 13486219

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGTTTCCTCTTCGGCAAGCGGAAGACGCCCGCAGAACTTTTGCGGGAAAACAAGAGGATGCTGGACAAATCTATTCGAGAGATAGAGAGGGAGAGAGGAGCTCTCCAAGGACAAGAGAAGAAACTAATTCTAGAGATTAAGAAAAGTGCCAAGCAAGGGCAGATGGGAGCTGTTAAAGTTATGGCGAAAGACCTTGTTCGAACACGACATCAGATTGAAAAGTTCTACAAGCTCAAATCTCAACTCCAGGGTGTATCTCTTAGAATTCAGACGTTGAAATCCACACAAGCTATGGGAGAGGCAATGAAAGGAGTGACGAAGGCAATGGGCCAGATGAACAGGCAGATGAACTTGCCATCACTGCAGAAAATTATGCAAGAATTTGAGAGGCAGAATGAGAAGATGGAATTGACAACTGAGGTGATGGGTGATGCTATTGATGATGCGCTGGAAGGAGATGAGGAAGAGGAGGAAACCGACGAACTAGTGAGCCAAGTTCTTGATGAAATTGGAATTAACGTCAACCAAGAGCTTGTTAATGCACCATCGGCTGCTGTTGCTGCACCAGCTGCGAAGAACAAAGTTCCGCAAGTGGAAACAGCAGCAGCTGGAGCTGATGACGGTGGGATAGATAGTGATTTACAGGCGAGGCTAGACAATTTAAGAAGGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

226

Amino Acids

25.13

Weight (kDa)

5.74

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06530 AT2G06530
fragaria_vesca	FvH4_1g08240
malus_domestica	MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica	Prupe.7G203100_v2.0.a1
pyrus_communis	pycom02g06980 pycom15g19010
rosa_chinensis	RchiOBHm_Chr2g0094291
rosa_laevigata	RLG00000016474
rosa_multiflora	Rmu_sc0003819.1_g000027
rosa_roxburghii	Rroxscaffold_2G00147290
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	22, 33, 46, 590
AcsI	RAATTY	2 cut(s)	267, 383
AcyI	GRCGYC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	221, 280
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	8 cut(s)	104, 173, 235, 293, 535, 572, 611, 617
AluI	AGCT	8 cut(s)	104, 173, 235, 293, 535, 572, 611, 617
Alw21I	GWGCWC	1 cut(s)	106
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	5 cut(s)	554, 563, 572, 605, 608
ApoI	RAATTY	2 cut(s)	267, 383
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	2 cut(s)	436, 443
AsuII	TTCGAA	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	106
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	5 cut(s)	541, 550, 559, 617, 620
BccI	CCATC	5 cut(s)	160, 367, 400, 421, 556
BciT130I	CCWGG	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	3 cut(s)	134, 488, 656
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	5 cut(s)	555, 564, 573, 606, 609
BlsI	GCNGC	5 cut(s)	556, 565, 574, 607, 610
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	3 cut(s)	51, 424, 436
BpiI	GAAGAC	1 cut(s)	32
BplI	GAGNNNNNCTC	4 cut(s)	88, 120, 90, 122
BpmI	CTGGAG	2 cut(s)	233, 633
Bpu14I	TTCGAA	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	109, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	312, 333
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	109, 250
BseGI	GGATG	2 cut(s)	66, 678
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMI	GCAATG	2 cut(s)	312, 333
BseMII	CTCAG	1 cut(s)	411
BseRI	GAGGAG	2 cut(s)	114, 485
BseXI	GCAGC	5 cut(s)	541, 550, 559, 617, 620
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	106
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	106
BspACI	CCGC	4 cut(s)	22, 33, 46, 590
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	412
BspMAI	CTGCAG	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	312, 333
BssECI	CCNNGG	2 cut(s)	109, 250
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	1 cut(s)	626
Bst6I	CTCTTC	2 cut(s)	17, 462
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	20, 33
BstDEI	CTNAG	2 cut(s)	263, 420
BstF5I	GGATG	2 cut(s)	66, 678
BstHHI	GCGC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 364, 551, 560, 563, 569, 572, 614
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	541, 550, 559, 617, 620
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	66, 678
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	2 cut(s)	20, 33
CaiI	CAGNNNCTG	1 cut(s)	611
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	331
CseI	GACGC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	263, 420
Eam1104I	CTCTTC	2 cut(s)	17, 462
EarI	CTCTTC	2 cut(s)	17, 462
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	267
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	3 cut(s)	185, 296, 377
FauI	CCCGC	2 cut(s)	39, 40
Fnu4HI	GCNGC	5 cut(s)	555, 564, 573, 606, 609
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	5 cut(s)	555, 564, 573, 606, 609
FspBI	CTAG	3 cut(s)	134, 488, 656
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	5 cut(s)	555, 564, 573, 606, 609
GsuI	CTGGAG	2 cut(s)	233, 633
HaeIII	GGCC	1 cut(s)	333
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HphI	GGTGA	2 cut(s)	436, 443
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	2 cut(s)	216, 273
Hpy188III	TCNNGA	3 cut(s)	80, 134, 503
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	3 cut(s)	316, 449, 663
HpyCH4III	ACNGT	1 cut(s)	626
HpyCH4IV	ACGT	2 cut(s)	275, 522
HpyCH4V	TGCA	4 cut(s)	367, 379, 545, 566
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 364, 551, 560, 563, 569, 572, 614
HpyF3I	CTNAG	2 cut(s)	263, 420
HpySE526I	ACGT	2 cut(s)	275, 522
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	1 cut(s)	449
LmnI	GCTCC	3 cut(s)	101, 170, 614
LpnPI	CCDG	9 cut(s)	50, 236, 263, 328, 347, 437, 582, 597, 632
Lsp1109I	GCAGC	5 cut(s)	541, 550, 559, 617, 620
LweI	GCATC	3 cut(s)	51, 424, 436
MaeI	CTAG	3 cut(s)	134, 488, 656
MaeII	ACGT	2 cut(s)	275, 522
MaeIII	GTNAC	1 cut(s)	316
MboII	GAAGA	6 cut(s)	4, 37, 133, 415, 479, 589
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	8 cut(s)	129, 267, 372, 383, 410, 510, 516, 661
MseI	TTAA	5 cut(s)	141, 177, 519, 540, 665
MspA1I	CMGCKG	2 cut(s)	572, 611
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	8 cut(s)	28, 364, 551, 560, 563, 569, 572, 614
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	202
PkrI	GCNGC	5 cut(s)	556, 565, 574, 607, 610
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	331
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	611
PvuII	CAGCTG	2 cut(s)	572, 611
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	5 cut(s)	141, 177, 519, 540, 665
SatI	GCNGC	5 cut(s)	555, 564, 573, 606, 609
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	106
SfaNI	GCATC	3 cut(s)	51, 424, 436
SfcI	CTRYAG	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	8 cut(s)	129, 267, 372, 383, 410, 510, 516, 661
SsiI	CCGC	4 cut(s)	22, 33, 46, 590
SspMI	CTAG	3 cut(s)	134, 488, 656
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	626
TaiI	ACGT	2 cut(s)	278, 525
TaqI	TCGA	2 cut(s)	79, 202
TasI	AATT	8 cut(s)	129, 267, 372, 383, 410, 510, 516, 661
Tru1I	TTAA	5 cut(s)	141, 177, 519, 540, 665
Tru9I	TTAA	5 cut(s)	141, 177, 519, 540, 665
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	5 cut(s)	554, 563, 572, 605, 608
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	4 cut(s)	323, 353, 365, 522
TspRI	CASTG	1 cut(s)	369
XapI	RAATTY	2 cut(s)	267, 383
XbaI	TCTAGA	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XspI	CTAG	3 cut(s)	134, 488, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.