Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0016118

Physical Location & Seq

Genomic Coordinates Reverse (-)

18850615 .. 18853250

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G203100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAGTTTCCTATTTGGCAAGCGGAAGACGCCCGCAGAGCTTCTGCGGGAAAACAAGAGGATGTTGGACAAATCTATTAGGGAAATAGAGAGGGAGAGGCAAGCCCTCCAAGGCCAAGAGAAGAAACTAATTATGGAGATTAAGAAAAGTGCCAAGCAAGGCCAGATGGGGGCCGTAAAAGTTATGGCAAAAGACCTTGTTCGAACACGACATCAGATTGAAAAGTTTTACAAGCTCAAATCCCAACTCCAGGGTGTATCTCTTAGAATCCAGACATTGAAATCGACACAAGCTATGGGAGAGGCAATGAAAGGAGTGACAAAGGCAATGGGACAGATGAACAGACAGATGAACTTGCCATCACTGCAGAAAATTATGCAAGAATTTGAGAGGCAGAATGAGAAGATGGAATTGGTAACTGAAGTGATGGGTGATGCGATTGATGATGCTTTGGAAGGAGATGAGGAAGAGGAGGAAACCGACGAACTAGTGAGCCAAGTTCTTGATGAGATTGGAATAGACGTTAACCAAGAGCTTGTTAATGCGCCATCAGCTGCTGTTGCTGCACCATCTGCAAAGAACAAGGTTCCACAAGTGGAAGCAGCTGCAACTGATGACACTGGGATAGATAGTGAGTTACAGGCGAGGCTAGACAATTTAAGAAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006900 GO:0006996 GO:0007032 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0036452 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0061024 GO:0070676 GO:0071702 GO:0071705 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

224

Amino Acids

25.13

Weight (kDa)

5.54

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G06530 AT2G06530
fragaria_vesca	FvH4_1g08240
malus_domestica	MD02G1086700.v1.1 MD15G1213900.v1.1
prunus_persica	Prupe.7G203100_v2.0.a1
pyrus_communis	pycom02g06980 pycom15g19010
rosa_chinensis	RchiOBHm_Chr2g0094291
rosa_laevigata	RLG00000016474
rosa_multiflora	Rmu_sc0003819.1_g000027
rosa_roxburghii	Rroxscaffold_2G00147290
rosa_rugosa	Rorug02G0042800
rosa_samantha	Rh2AG090500 Rh2BG090400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	22, 33, 46
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	441
AcyI	GRCGYC	1 cut(s)	29
AfiI	CCNNNNNNNGG	2 cut(s)	169, 250
AgsI	TTSAA	2 cut(s)	221, 280
AhlI	ACTAGT	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	6 cut(s)	40, 235, 293, 535, 554, 605
AluI	AGCT	6 cut(s)	40, 235, 293, 535, 554, 605
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	112, 160, 171
ApeKI	GCWGC	4 cut(s)	554, 563, 602, 605
ApoI	RAATTY	1 cut(s)	383
AspLEI	GCGC	1 cut(s)	547
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	202
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	541, 550, 592, 614
BccI	CCATC	6 cut(s)	160, 367, 400, 421, 556, 577
BceAI	ACGGC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	487
BfaI	CTAG	2 cut(s)	488, 650
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	4 cut(s)	555, 564, 603, 606
BlsI	GCNGC	4 cut(s)	556, 565, 604, 607
Bme1390I	CCNGG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	172, 588
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	2 cut(s)	424, 436
BmuI	ACTGGG	1 cut(s)	630
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	202
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	109, 250
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 250
Bse1I	ACTGG	1 cut(s)	625
Bse3DI	GCAATG	2 cut(s)	312, 333
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	109, 250
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	169, 250
BseMI	GCAATG	2 cut(s)	312, 333
BseNI	ACTGG	1 cut(s)	625
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	4 cut(s)	541, 550, 592, 614
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	114, 162, 173
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	169, 250
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	114, 162, 173
Bsp119I	TTCGAA	1 cut(s)	202
BspACI	CCGC	3 cut(s)	22, 33, 46
BspANI	GGCC	3 cut(s)	114, 162, 173
BspLI	GGNNCC	2 cut(s)	172, 588
BspMAI	CTGCAG	1 cut(s)	369
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	2 cut(s)	312, 333
BsrI	ACTGG	1 cut(s)	625
BssECI	CCNNGG	2 cut(s)	109, 250
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	572
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	3 cut(s)	20, 33, 102
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 37, 364, 551, 560, 563, 572
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstSFI	CTRYAG	1 cut(s)	365
BstV1I	GCAGC	4 cut(s)	541, 550, 592, 614
BstV2I	GAAGAC	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	114, 162, 173
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	362, 618
Cac8I	GCNNGC	3 cut(s)	20, 33, 102
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	1 cut(s)	547
Cfr13I	GGNCC	1 cut(s)	171
CseI	GACGC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	4 cut(s)	134, 185, 296, 377
FaqI	GGGAC	1 cut(s)	345
FauI	CCCGC	2 cut(s)	39, 40
Fnu4HI	GCNGC	4 cut(s)	555, 564, 603, 606
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	4 cut(s)	555, 564, 603, 606
FspBI	CTAG	2 cut(s)	488, 650
GlaI	GCGC	1 cut(s)	546
GluI	GCNGC	4 cut(s)	555, 564, 603, 606
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	3 cut(s)	114, 162, 173
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	545
HinP1I	GCGC	1 cut(s)	545
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	1 cut(s)	267
HpaI	GTTAAC	1 cut(s)	526
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	2 cut(s)	271, 503
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	449
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	5 cut(s)	367, 379, 566, 575, 608
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 37, 364, 551, 560, 563, 572
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	1 cut(s)	545
KspAI	GTTAAC	1 cut(s)	526
LpnPI	CCDG	6 cut(s)	176, 236, 263, 284, 606, 626
Lsp1109I	GCAGC	4 cut(s)	541, 550, 592, 614
LweI	GCATC	2 cut(s)	424, 436
MaeI	CTAG	2 cut(s)	488, 650
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	316, 415, 636
MboII	GAAGA	4 cut(s)	37, 133, 415, 479
MluCI	AATT	5 cut(s)	129, 372, 383, 410, 655
MmeI	TCCRAC	1 cut(s)	45
MseI	TTAA	4 cut(s)	141, 525, 540, 659
MspA1I	CMGCKG	2 cut(s)	554, 605
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	7 cut(s)	28, 37, 364, 551, 560, 563, 572
NlaIV	GGNNCC	2 cut(s)	172, 588
NmuCI	GTSAC	1 cut(s)	316
NspV	TTCGAA	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	4 cut(s)	556, 565, 604, 607
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	172, 588
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	557
PvuII	CAGCTG	2 cut(s)	554, 605
SaqAI	TTAA	4 cut(s)	141, 525, 540, 659
SatI	GCNGC	4 cut(s)	555, 564, 603, 606
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	9 cut(s)	42, 198, 237, 295, 525, 537, 556, 588, 607
SfaNI	GCATC	2 cut(s)	424, 436
SfcI	CTRYAG	1 cut(s)	365
SfuI	TTCGAA	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	487
Sse9I	AATT	5 cut(s)	129, 372, 383, 410, 655
SsiI	CCGC	3 cut(s)	22, 33, 46
SspMI	CTAG	2 cut(s)	488, 650
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	202, 284
TasI	AATT	5 cut(s)	129, 372, 383, 410, 655
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	4 cut(s)	141, 525, 540, 659
Tru9I	TTAA	4 cut(s)	141, 525, 540, 659
TscAI	CASTG	2 cut(s)	369, 625
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	554, 563, 602, 605
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	323, 353, 365
TspRI	CASTG	2 cut(s)	369, 625
XapI	RAATTY	1 cut(s)	383
XspI	CTAG	2 cut(s)	488, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.