AT2G18710

SecY translocase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8112084 .. 8114485
2402 bp
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UTR
Exon/CDS
Intron
AT2G18710.1

Sequence Viewer

Length: 1656 bp
ATGATAACGGTAAGCGAAGTTTCCTCTTACTCTTCTTCTTCTTCAAACTTCGCGTCTCTGTCTCGTCTCAATCACAAATCATCTTCGAGATTGCGAAGCTCTTCTCTTTACAAAGGAAGCTTCTTCTCTGTTTCGACAAAGACCAGGAGGAACACTTGTAAAGCCAAATCATGGAATCTCGGTCTTGTTATCAACTCTAGAAGCTCTGAGGCTTCGGTTTTTGATCCGTTGGGGATCAATCCAGATGAAACTTCTGGTTTAAGTAGCATTTGGGAAAGCTTTGTGAGTCTTTTGTCACCATCATTTGAAAGCTCTTCCGGTAACAGGCGAGATAAGCCGTCTTCTGGTAGAGGCGTGGCAGCTGCTATTGAGGACAGTTCCATTGATTTTGGAGATTTCTTCAAAGGGCCATTGCCAGGGAAGTTTCTGAAGCTTCTTGGGTTTTTAGCTCTCTCTCGGCTTGGAATTTACATACCACTCGGCGGGGTTAATCGAGAAGCTTTTGTTGGAAATTTGGATCAGAATAGCATTTTGAGCACTTTGGATACATTTTCTGGTGGAGGCATAGGTAGACTTGGTATATGTTCTCTCGGGATTGTTCCTTTCATCAACGCTCAGATTGTGTTTCAGCTTCTTGCTCAAGTCTATCCAAAGTTGCAAGATCTTCAGAAAAAAGAAGGTGAAGCTGGTAGAAAAAAGATTCTTCAGTATACTAGATATGCTTCAGTTGGTTTTGCGATAGTACAAGCAATCGGACAAGTGTTTTACCTTCGTCCTTACGTTAATGACTTCAGCACGGAATGGGTTGTTTCTTCTGTTACGTTGTTAACGCTTGGTTCTGTTCTCACTACATATATTGGAGAGAGAATCTCTGATCTGAAACTTGGAAATGGCACTTCCCTATTGATTTTCACAAGTATCATCTCTTACTTGCCTGCATCATTCGGTAGAACAACAGCAGAGGCCTTACAGGAAGGAAACTATACTGGTCTTGGAACCATCGTTGTTTCATTTCTCCTCTTGGTACTCGGGATAGTATATGTTCAGGAAGCAGAGAGGAAAATTCCGCTCAATTATGCCTCGCGATACACCAGCAAAGCTGGTGGGCTTCAGAAATCTGCTTATCTTCCATTCAAGGTCAATAGTGCGGGAGTAATGCCTATCATATTCTCCACATCATCTCTTGCTCTTCCTGCTACTTTAGCACGATTTACCGGCATATCTGCTTTGAAGAATGTTGCTTTTGCTTTAACCCCTGGAGGTTCTTTCTATCTTCCAACCAATATACTTCTCATAGCTTTCTTCAACTACTACTACACTTTCTTGCAACTTGACCCGGACGACGTGAGTGAACAATTAAAACGCCAAGGTGCATCAATCCCTCTAGTCCGACCTGGTAAAAGCACTGCTCTCTTCATCAAAACCGTCCTTGGCCGGATATCGGTTCTTGGTTCTGCATTTCTGGCTGTTCTAGCTGCTGGTCCTGCTGTAGTCGAACAGATCACTCACTTGACAGCATTCAGAGGATTTGCAGGCACTTCTGTTCTGATCCTTGTCGGGTGTGCGACAGATACTGCAAGAAAGGTTCAAGCAGAGATAATCTCGCAAAAGTACAAGAACATTGAGTTTTACGAGCTTGACAAGTATGATCCATGA

Protein Analysis

551

Amino Acids

59.49

Weight (kDa)

9.49

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecY PF00344 194 - 525 5.3e-90 SecY
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AccBSI CCGCTC 1 cut(s) 1069
AccI GTMKAC 2 cut(s) 571, 710
AccII CGCG 2 cut(s) 53, 1084
AciI CCGC 3 cut(s) 483, 1067, 1148
AclWI GGATC 5 cut(s) 218, 242, 525, 1543, 1643
AcoI YGGCCR 1 cut(s) 1432
AcsI RAATTY 3 cut(s) 465, 511, 1062
AcuI CTGAAG 6 cut(s) 449, 650, 689, 708, 775, 1094
AfaI GTAC 3 cut(s) 744, 1026, 1613
AfiI CCNNNNNNNGG 6 cut(s) 171, 324, 344, 416, 482, 1441
AgsI TTSAA 7 cut(s) 45, 308, 403, 1135, 1231, 1306, 1589
AjiI CACGTC 1 cut(s) 1345
AjnI CCWGG 4 cut(s) 143, 415, 1255, 1393
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 3 cut(s) 60, 66, 71
AlwI GGATC 5 cut(s) 218, 242, 525, 1543, 1643
AlwNI CAGNNNCTG 1 cut(s) 1574
Ama87I CYCGRG 2 cut(s) 590, 1028
AoxI GGCC 3 cut(s) 407, 963, 1432
ApeKI GCWGC 3 cut(s) 359, 362, 1475
ApoI RAATTY 3 cut(s) 465, 511, 1062
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 407, 1481
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 2 cut(s) 288, 692
AvaI CYCGRG 2 cut(s) 590, 1028
AvaII GGWCC 1 cut(s) 1481
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 3 cut(s) 349, 371, 1462
BccI CCATC 2 cut(s) 307, 1007
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 4 cut(s) 145, 417, 1257, 1395
BciVI GTATCC 1 cut(s) 538
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 3 cut(s) 60, 66, 71
BfaI CTAG 4 cut(s) 198, 714, 1385, 1472
BfmI CTRYAG 1 cut(s) 1488
BfuI GTATCC 1 cut(s) 538
BglII AGATCT 1 cut(s) 661
BisI GCNGC 3 cut(s) 360, 363, 1476
BlsI GCNGC 3 cut(s) 361, 364, 1477
Bme1390I CCNGG 5 cut(s) 145, 417, 1257, 1337, 1395
Bme18I GGWCC 1 cut(s) 1481
BmeT110I CYCGRG 2 cut(s) 590, 1028
BmgBI CACGTC 1 cut(s) 1345
BmgT120I GGNCC 2 cut(s) 407, 1481
BmiI GGNNCC 1 cut(s) 997
BmrFI CCNGG 5 cut(s) 145, 417, 1257, 1337, 1395
BmsI GCATC 2 cut(s) 947, 1382
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 4 cut(s) 854, 886, 1586, 1618
BpmI CTGGAG 1 cut(s) 1278
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 1337
BsaJI CCNNGG 4 cut(s) 416, 1255, 1366, 1429
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 324, 344, 416, 482, 1441
Bse118I RCCGGY 1 cut(s) 1214
Bse1I ACTGG 1 cut(s) 991
Bse3DI GCAATG 1 cut(s) 410
BseBI CCWGG 4 cut(s) 145, 417, 1257, 1395
BseDI CCNNGG 4 cut(s) 416, 1255, 1366, 1429
BseLI CCNNNNNNNGG 6 cut(s) 171, 324, 344, 416, 482, 1441
BseMI GCAATG 1 cut(s) 410
BseMII CTCAG 2 cut(s) 198, 629
BseNI ACTGG 1 cut(s) 991
BseRI GAGGAG 1 cut(s) 1007
BseXI GCAGC 3 cut(s) 349, 371, 1462
Bsh1236I CGCG 2 cut(s) 53, 1084
BshFI GGCC 3 cut(s) 409, 965, 1434
BsiHKAI GWGCWC 1 cut(s) 539
BsiHKCI CYCGRG 2 cut(s) 590, 1028
BsiSI CCGG 4 cut(s) 318, 1215, 1337, 1435
BslI CCNNNNNNNGG 6 cut(s) 171, 324, 344, 416, 482, 1441
BsmAI GTCTC 3 cut(s) 60, 66, 71
BsmBI CGTCTC 2 cut(s) 60, 71
BsmI GAATGC 1 cut(s) 1517
BsnI GGCC 3 cut(s) 409, 965, 1434
BsoBI CYCGRG 2 cut(s) 590, 1028
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
Bsp68I TCGCGA 1 cut(s) 1084
BspACI CCGC 3 cut(s) 483, 1067, 1148
BspANI GGCC 3 cut(s) 409, 965, 1434
BspCNI CTCAG 2 cut(s) 199, 628
BspFNI CGCG 2 cut(s) 53, 1084
BspLI GGNNCC 1 cut(s) 997
BspPI GGATC 5 cut(s) 218, 242, 525, 1543, 1643
BspQI GCTCTTC 3 cut(s) 106, 319, 1194
BsrBI CCGCTC 1 cut(s) 1069
BsrDI GCAATG 1 cut(s) 410
BsrFI RCCGGY 1 cut(s) 1214
BsrI ACTGG 1 cut(s) 991
BssAI RCCGGY 1 cut(s) 1214
BssECI CCNNGG 4 cut(s) 416, 1255, 1366, 1429
BssMI GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
BssNAI GTATAC 1 cut(s) 711
BssT1I CCWWGG 2 cut(s) 1366, 1429
Bst1107I GTATAC 1 cut(s) 711
Bst2UI CCWGG 4 cut(s) 145, 417, 1257, 1395
Bst4CI ACNGT 3 cut(s) 10, 377, 1426
Bst6I CTCTTC 5 cut(s) 37, 106, 319, 1194, 1418
BstC8I GCNNGC 2 cut(s) 936, 1534
BstDEI CTNAG 2 cut(s) 207, 615
BstFNI CGCG 2 cut(s) 53, 1084
BstKTI GATC 8 cut(s) 226, 237, 520, 664, 877, 1503, 1551, 1651
BstMAI GTCTC 3 cut(s) 60, 66, 71
BstMBI GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
BstMWI GCNNNNNNNGC 7 cut(s) 334, 534, 1193, 1202, 1463, 1472, 1484
BstNI CCWGG 4 cut(s) 145, 417, 1257, 1395
BstSCI CCNGG 5 cut(s) 143, 415, 1255, 1335, 1393
BstSFI CTRYAG 1 cut(s) 1488
BstUI CGCG 2 cut(s) 53, 1084
BstV1I GCAGC 3 cut(s) 349, 371, 1462
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BstZ17I GTATAC 1 cut(s) 711
BsuI GTATCC 1 cut(s) 538
BsuRI GGCC 3 cut(s) 409, 965, 1434
BtrI CACGTC 1 cut(s) 1345
BtsI GCAGTG 1 cut(s) 1404
BtsIMutI CAGTG 1 cut(s) 1404
BtuMI TCGCGA 1 cut(s) 1084
Cac8I GCNNGC 2 cut(s) 936, 1534
CaiI CAGNNNCTG 1 cut(s) 1574
Cfr10I RCCGGY 1 cut(s) 1214
Cfr13I GGNCC 2 cut(s) 407, 1481
CseI GACGC 1 cut(s) 42
CsiI ACCWGGT 1 cut(s) 1393
Csp6I GTAC 3 cut(s) 743, 1025, 1612
CspCI CAANNNNNGTGG 2 cut(s) 1084, 1119
CviAII CATG 2 cut(s) 171, 1653
CviQI GTAC 3 cut(s) 743, 1025, 1612
DdeI CTNAG 2 cut(s) 207, 615
DpnI GATC 8 cut(s) 225, 236, 519, 663, 876, 1502, 1550, 1650
DpnII GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
EaeI YGGCCR 1 cut(s) 1432
Eam1104I CTCTTC 5 cut(s) 37, 106, 319, 1194, 1418
EarI CTCTTC 5 cut(s) 37, 106, 319, 1194, 1418
Eco130I CCWWGG 2 cut(s) 1366, 1429
Eco147I AGGCCT 1 cut(s) 965
Eco32I GATATC 1 cut(s) 1440
Eco47I GGWCC 1 cut(s) 1481
Eco57I CTGAAG 6 cut(s) 449, 650, 689, 708, 775, 1094
Eco88I CYCGRG 2 cut(s) 590, 1028
EcoRII CCWGG 4 cut(s) 143, 415, 1255, 1393
EcoRV GATATC 1 cut(s) 1440
EcoT14I CCWWGG 2 cut(s) 1366, 1429
ErhI CCWWGG 2 cut(s) 1366, 1429
Esp3I CGTCTC 2 cut(s) 60, 71
FaeI CATG 2 cut(s) 174, 1656
FatI CATG 2 cut(s) 170, 1652
FauI CCCGC 2 cut(s) 476, 1141
FblI GTMKAC 2 cut(s) 571, 710
Fnu4HI GCNGC 3 cut(s) 360, 363, 1476
Fsp4HI GCNGC 3 cut(s) 360, 363, 1476
FspBI CTAG 4 cut(s) 198, 714, 1385, 1472
GluI GCNGC 3 cut(s) 360, 363, 1476
GsuI CTGGAG 1 cut(s) 1278
HaeIII GGCC 3 cut(s) 409, 965, 1434
HapII CCGG 4 cut(s) 318, 1215, 1337, 1435
HgaI GACGC 1 cut(s) 42
Hin1II CATG 2 cut(s) 174, 1656
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 4 cut(s) 118, 277, 431, 498
HinfI GANTC 4 cut(s) 175, 286, 700, 867
HpaI GTTAAC 1 cut(s) 828
HpaII CCGG 4 cut(s) 318, 1215, 1337, 1435
HphI GGTGA 2 cut(s) 288, 692
Hpy166II GTNNAC 4 cut(s) 572, 711, 828, 1352
Hpy188III TCNNGA 8 cut(s) 87, 198, 242, 494, 592, 1030, 1046, 1083
Hpy8I GTNNAC 4 cut(s) 572, 711, 828, 1352
Hpy99I CGWCG 1 cut(s) 1346
HpyAV CCTTC 3 cut(s) 671, 779, 968
HpyCH4III ACNGT 3 cut(s) 10, 377, 1426
HpyCH4IV ACGT 3 cut(s) 780, 821, 1344
HpyCH4V TGCA 7 cut(s) 658, 938, 1327, 1373, 1457, 1532, 1577
HpyF10VI GCNNNNNNNGC 7 cut(s) 334, 534, 1193, 1202, 1463, 1472, 1484
HpyF3I CTNAG 2 cut(s) 207, 615
HpySE526I ACGT 3 cut(s) 780, 821, 1344
Hsp92II CATG 2 cut(s) 174, 1656
KspAI GTTAAC 1 cut(s) 828
Kzo9I GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
LguI GCTCTTC 3 cut(s) 106, 319, 1194
Lsp1109I GCAGC 3 cut(s) 349, 371, 1462
LweI GCATC 2 cut(s) 947, 1382
MabI ACCWGGT 1 cut(s) 1393
MaeI CTAG 4 cut(s) 198, 714, 1385, 1472
MaeII ACGT 3 cut(s) 780, 821, 1344
MaeIII GTNAC 3 cut(s) 294, 320, 817
MalI GATC 8 cut(s) 225, 236, 519, 663, 876, 1502, 1550, 1650
MbiI CCGCTC 1 cut(s) 1069
MboI GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 5 cut(s) 465, 511, 1062, 1072, 1355
MlyI GAGTC 1 cut(s) 295
MmeI TCCRAC 3 cut(s) 487, 1301, 1414
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 6 cut(s) 260, 489, 783, 827, 1250, 1358
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 4 cut(s) 318, 1215, 1337, 1435
MspR9I CCNGG 5 cut(s) 145, 417, 1257, 1337, 1395
Mva1269I GAATGC 1 cut(s) 1517
MvaI CCWGG 4 cut(s) 145, 417, 1257, 1395
MvnI CGCG 2 cut(s) 53, 1084
MwoI GCNNNNNNNGC 7 cut(s) 334, 534, 1193, 1202, 1463, 1472, 1484
NciI CCSGG 1 cut(s) 1337
NdeII GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
NlaIII CATG 2 cut(s) 174, 1656
NlaIV GGNNCC 1 cut(s) 997
NmeAIII GCCGAG 2 cut(s) 436, 459
NmuCI GTSAC 1 cut(s) 294
NruI TCGCGA 1 cut(s) 1084
PceI AGGCCT 1 cut(s) 965
PciSI GCTCTTC 3 cut(s) 106, 319, 1194
PctI GAATGC 1 cut(s) 1517
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 175, 700, 867
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 3 cut(s) 361, 364, 1477
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
Psp6I CCWGG 4 cut(s) 143, 415, 1255, 1393
PspGI CCWGG 4 cut(s) 143, 415, 1255, 1393
PspN4I GGNNCC 1 cut(s) 997
PspPI GGNCC 2 cut(s) 407, 1481
PstNI CAGNNNCTG 1 cut(s) 1574
PsuI RGATCY 1 cut(s) 661
PvuII CAGCTG 1 cut(s) 362
RruI TCGCGA 1 cut(s) 1084
RsaI GTAC 3 cut(s) 744, 1026, 1613
RsaNI GTAC 3 cut(s) 743, 1025, 1612
SapI GCTCTTC 3 cut(s) 106, 319, 1194
SaqAI TTAA 6 cut(s) 260, 489, 783, 827, 1250, 1358
SatI GCNGC 3 cut(s) 360, 363, 1476
Sau3AI GATC 8 cut(s) 223, 234, 517, 661, 874, 1500, 1548, 1648
Sau96I GGNCC 2 cut(s) 407, 1481
SchI GAGTC 1 cut(s) 295
ScrFI CCNGG 5 cut(s) 145, 417, 1257, 1337, 1395
SduI GDGCHC 1 cut(s) 539
SexAI ACCWGGT 1 cut(s) 1393
SfaNI GCATC 2 cut(s) 947, 1382
SfcI CTRYAG 1 cut(s) 1488
SinI GGWCC 1 cut(s) 1481
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 5 cut(s) 465, 511, 1062, 1072, 1355
SseBI AGGCCT 1 cut(s) 965
SsiI CCGC 3 cut(s) 483, 1067, 1148
SspMI CTAG 4 cut(s) 198, 714, 1385, 1472
StuI AGGCCT 1 cut(s) 965
StyD4I CCNGG 5 cut(s) 143, 415, 1255, 1335, 1393
StyI CCWWGG 2 cut(s) 1366, 1429
TaaI ACNGT 3 cut(s) 10, 377, 1426
TaiI ACGT 3 cut(s) 783, 824, 1347
TaqI TCGA 4 cut(s) 86, 134, 493, 1494
TaqII GACCGA 1 cut(s) 170
TasI AATT 5 cut(s) 465, 511, 1062, 1072, 1355
TatI WGTACW 2 cut(s) 742, 1611
TfiI GAWTC 3 cut(s) 175, 700, 867
Tru1I TTAA 6 cut(s) 260, 489, 783, 827, 1250, 1358
Tru9I TTAA 6 cut(s) 260, 489, 783, 827, 1250, 1358
TscAI CASTG 1 cut(s) 1411
TseFI GTSAC 1 cut(s) 294
TseI GCWGC 3 cut(s) 359, 362, 1475
Tsp45I GTSAC 1 cut(s) 294
TspDTI ATGAA 4 cut(s) 261, 595, 999, 1405
TspGWI ACGGA 2 cut(s) 216, 812
TspRI CASTG 1 cut(s) 1411
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 1481
XapI RAATTY 3 cut(s) 465, 511, 1062
XbaI TCTAGA 1 cut(s) 197
XmiI GTMKAC 2 cut(s) 571, 710
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 4 cut(s) 198, 714, 1385, 1472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.