Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010079

Physical Location & Seq

Genomic Coordinates Forward (+)

42768707 .. 42774000

Gene Structure 5294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGTTGATAACGGTCAGAGGACCCTTTTGTTCTTCTTCTCCGTTCTGCTTCAACAGCTTCTCTTATCCAACGCTGAAACGTTCAGTATGCAAACCCAGATTCTCTGTTCCCAGAAAACCCAACAGCATTACTTGTTGGAAGCTTGGCGTTCTATCCAACAGCTCTGAAGCCTCAGTTTTTGATCCCTTGGATATAAATTCAGACGTACATTCTGGTCTAAATGCTACCTGGGATAGTTTCCTATGCCTATTTTCAAGACCGTTAGAGAGTGCTTCAAGTTCTAAGAAGGAGAAATCTAACTCCACTCGAGGATTAGCAGCTGCCATAGAAGACAGTTCCATTGATTTTGGAGACTTTTTCAAAGGCCCATTACCAGGGAAGTTTCTCATGCTGTTGGGATATCTGGCCTTATCTCGACTTGGAATATATATACCTCTTGGTGGGGTAAACCGTGAGGCTTTTGTTGGAAATTTGGACCAGAATAGTTTGTTGAGCACTTTGGATTCATTTTCTGGAGGCGGCATTGGCCGACTTGGTATATGTTCACTTGGTATTGTTCCCTTCATCAATGCCCAGATTGTCTTCCAGCTCCTTGCACAAGTATATCCCAAGTTGCAGGATCTTCAGAAAAAAGAAGGTGAAGCAGGAAGAAAGAAAGTTCTGCGGTATACACAATATGCTTCGGTTGGGTTTGCAGTAGTCCAGGCAATTGGCCAAGTATTCTTCCTTCGCCCATATGTCAATGACTTCAGTACGGAGTGGGTTCTCTCATCTGTGATCTTATTGACTCTTGGCTCAGTATTGACAACATACATTGGAGAACGAATCTCAGACCTAAAACTTGGGAATGGCACATCTCTTTTGATATTCACAAGCATCATCTCCTACTTTCCAGCATCTGTTGGTAGGACAGTTGCACAGGCATTCCAAGATGGTAACTATGTTGGACTCGCCACCATCGTTGCCTCCTTTTTTCTGTTGGTCCTTGGAATTGTGTATGTTCAGGAAGCAGAAAGGAAAATTCCAATTAATTATGCCTCAAGGTACACCAGCAGAAGTGCAGGTCCTCAAAGGTCTGCTTACCTCCCCTTTAAGGTAAATAGTTCTGGAGTAATGCCAATAATATTTTCTACATCATCATTAGCTCTTCCTGGCACTTTAGCACGCTTCACTGGTTTAGCTCCATTGAAAACGGCTGCAGTGGCTTTAAATCCAGGAGGTAAGAATTGCAATTTCTATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009657 GO:0009668 GO:0009987 GO:0010027 GO:0016020 GO:0016043 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0061024 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

SecY

Protein Analysis

415

Amino Acids

44.78

Weight (kDa)

9.42

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	180 - 396	8e-59	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18710
fragaria_vesca	FvH4_4g08350 FvH4_4g08350 FvH4_4g08350
malus_domestica	MD13G1262000.v1.1
prunus_persica	Prupe.1G095100_v2.0.a1 Prupe.1G095100_v2.0.a1 Prupe.1G095100_v2.0.a1 Prupe.1G095100_v2.0.a1 Prupe.1G095100_v2.0.a1
pyrus_communis	pycom13g24560
rosa_chinensis	RchiOBHm_Chr4g0404181
rosa_laevigata	RLG00000008923
rosa_multiflora	Rmu_sc0001785.1_g000021
rosa_roxburghii	Rroxscaffold_5G00348680
rosa_rugosa	Rorug04G0047200
rosa_samantha	Rh4AG123600 Rh4BG116900 Rh4CG131600 Rh4DG116100
rosa_wichuraiana	Rw4G010000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1052
AccI	GTMKAC	1 cut(s)	668
AciI	CCGC	2 cut(s)	519, 664
AclI	AACGTT	1 cut(s)	79
AclWI	GGATC	2 cut(s)	176, 627
AcoI	YGGCCR	2 cut(s)	526, 712
AcsI	RAATTY	3 cut(s)	196, 469, 1020
AcuI	CTGAAG	3 cut(s)	186, 608, 733
AfaI	GTAC	3 cut(s)	207, 754, 1046
AfiI	CCNNNNNNNGG	3 cut(s)	374, 440, 1093
AgsI	TTSAA	5 cut(s)	52, 255, 276, 361, 1189
AjnI	CCWGG	5 cut(s)	227, 373, 702, 1150, 1213
AjuI	GAANNNNNNNTTGG	2 cut(s)	1111, 1143
AluBI	AGCT	7 cut(s)	57, 142, 162, 320, 589, 1145, 1181
AluI	AGCT	7 cut(s)	57, 142, 162, 320, 589, 1145, 1181
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	2 cut(s)	176, 627
AlwNI	CAGNNNCTG	1 cut(s)	899
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	4 cut(s)	364, 405, 526, 712
ApeKI	GCWGC	3 cut(s)	317, 320, 1196
ApoI	RAATTY	3 cut(s)	196, 469, 1020
AseI	ATTAAT	1 cut(s)	1029
AspS9I	GGNCC	5 cut(s)	20, 365, 475, 982, 1064
AsuHPI	GGTGA	1 cut(s)	650
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	4 cut(s)	20, 475, 982, 1064
BalI	TGGCCA	1 cut(s)	714
BarI	GAAGNNNNNNTAC	2 cut(s)	711, 743
BbsI	GAAGAC	2 cut(s)	336, 574
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	3 cut(s)	307, 329, 1183
BccI	CCATC	2 cut(s)	926, 965
BceAI	ACGGC	1 cut(s)	1209
BciT130I	CCWGG	5 cut(s)	229, 375, 704, 1152, 1215
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	1243
BfmI	CTRYAG	1 cut(s)	1197
BfuAI	ACCTGC	1 cut(s)	1052
BisI	GCNGC	4 cut(s)	318, 321, 520, 1197
BlsI	GCNGC	4 cut(s)	319, 322, 521, 1198
Bme1390I	CCNGG	5 cut(s)	229, 375, 704, 1152, 1215
Bme18I	GGWCC	4 cut(s)	20, 475, 982, 1064
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	5 cut(s)	20, 365, 475, 982, 1064
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	5 cut(s)	229, 375, 704, 1152, 1215
BmsI	GCATC	2 cut(s)	885, 905
BpiI	GAAGAC	2 cut(s)	336, 574
BpmI	CTGGAG	2 cut(s)	534, 1128
BpuEI	CTTGAG	1 cut(s)	1024
BsaJI	CCNNGG	4 cut(s)	186, 228, 374, 985
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 440, 1093
Bse1I	ACTGG	1 cut(s)	1177
BseBI	CCWGG	5 cut(s)	229, 375, 704, 1152, 1215
BseDI	CCNNGG	4 cut(s)	186, 228, 374, 985
BseLI	CCNNNNNNNGG	3 cut(s)	374, 440, 1093
BseMII	CTCAG	3 cut(s)	186, 810, 843
BseNI	ACTGG	1 cut(s)	1177
BseXI	GCAGC	3 cut(s)	307, 329, 1183
BsgI	GTGCAG	1 cut(s)	1080
BshFI	GGCC	4 cut(s)	366, 407, 528, 714
BsiHKAI	GWGCWC	1 cut(s)	497
BsiHKCI	CYCGRG	1 cut(s)	306
BslI	CCNNNNNNNGG	3 cut(s)	374, 440, 1093
BsmAI	GTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	923
BsnI	GGCC	4 cut(s)	366, 407, 528, 714
BsoBI	CYCGRG	1 cut(s)	306
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	3 cut(s)	181, 619, 777
BspACI	CCGC	2 cut(s)	519, 664
BspANI	GGCC	4 cut(s)	366, 407, 528, 714
BspCNI	CTCAG	3 cut(s)	185, 809, 842
BspLI	GGNNCC	1 cut(s)	22
BspMAI	CTGCAG	1 cut(s)	1201
BspMI	ACCTGC	1 cut(s)	1052
BspPI	GGATC	2 cut(s)	176, 627
BspQI	GCTCTTC	1 cut(s)	1152
BsrI	ACTGG	1 cut(s)	1177
BssECI	CCNNGG	4 cut(s)	186, 228, 374, 985
BssMI	GATC	3 cut(s)	181, 619, 777
BssNAI	GTATAC	1 cut(s)	669
BssT1I	CCWWGG	2 cut(s)	186, 985
Bst1107I	GTATAC	1 cut(s)	669
Bst2UI	CCWGG	5 cut(s)	229, 375, 704, 1152, 1215
Bst4CI	ACNGT	5 cut(s)	13, 261, 335, 452, 913
Bst6I	CTCTTC	1 cut(s)	1152
BstC8I	GCNNGC	1 cut(s)	1165
BstDEI	CTNAG	4 cut(s)	172, 282, 796, 829
BstKTI	GATC	3 cut(s)	184, 622, 780
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	181, 619, 777
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 525, 1202
BstNI	CCWGG	5 cut(s)	229, 375, 704, 1152, 1215
BstSCI	CCNGG	5 cut(s)	227, 373, 702, 1150, 1213
BstSFI	CTRYAG	1 cut(s)	1197
BstV1I	GCAGC	3 cut(s)	307, 329, 1183
BstV2I	GAAGAC	2 cut(s)	336, 574
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	619
BstZ17I	GTATAC	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	366, 407, 528, 714
BtsI	GCAGTG	1 cut(s)	1206
BtsIMutI	CAGTG	2 cut(s)	1170, 1206
BveI	ACCTGC	1 cut(s)	1052
Cac8I	GCNNGC	1 cut(s)	1165
CaiI	CAGNNNCTG	1 cut(s)	899
Cfr13I	GGNCC	5 cut(s)	20, 365, 475, 982, 1064
Csp6I	GTAC	3 cut(s)	206, 753, 1045
CspCI	CAANNNNNGTGG	2 cut(s)	943, 978
CviAII	CATG	1 cut(s)	388
CviQI	GTAC	3 cut(s)	206, 753, 1045
DdeI	CTNAG	4 cut(s)	172, 282, 796, 829
DpnI	GATC	3 cut(s)	183, 621, 779
DpnII	GATC	3 cut(s)	181, 619, 777
DraI	TTTAAA	1 cut(s)	1209
EaeI	YGGCCR	2 cut(s)	526, 712
Eam1104I	CTCTTC	1 cut(s)	1152
EarI	CTCTTC	1 cut(s)	1152
Eco130I	CCWWGG	2 cut(s)	186, 985
Eco32I	GATATC	1 cut(s)	401
Eco47I	GGWCC	4 cut(s)	20, 475, 982, 1064
Eco57I	CTGAAG	3 cut(s)	186, 608, 733
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	2 cut(s)	20, 1064
EcoRII	CCWGG	5 cut(s)	227, 373, 702, 1150, 1213
EcoRV	GATATC	1 cut(s)	401
EcoT14I	CCWWGG	2 cut(s)	186, 985
ErhI	CCWWGG	2 cut(s)	186, 985
FaeI	CATG	1 cut(s)	391
FalI	AAGNNNNNCTT	2 cut(s)	1063, 1095
FatI	CATG	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	668
Fnu4HI	GCNGC	4 cut(s)	318, 321, 520, 1197
Fsp4HI	GCNGC	4 cut(s)	318, 321, 520, 1197
FspBI	CTAG	1 cut(s)	1243
GluI	GCNGC	4 cut(s)	318, 321, 520, 1197
GsuI	CTGGAG	2 cut(s)	534, 1128
HaeIII	GGCC	4 cut(s)	366, 407, 528, 714
Hin1II	CATG	1 cut(s)	391
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	5 cut(s)	99, 503, 787, 825, 948
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	4 cut(s)	448, 545, 669, 1047
Hpy188I	TCNGA	5 cut(s)	17, 166, 202, 627, 832
Hpy188III	TCNNGA	5 cut(s)	255, 414, 513, 1004, 1107
Hpy8I	GTNNAC	4 cut(s)	448, 545, 669, 1047
HpyAV	CCTTC	4 cut(s)	280, 571, 629, 737
HpyCH4III	ACNGT	5 cut(s)	13, 261, 335, 452, 913
HpyCH4IV	ACGT	2 cut(s)	79, 204
HpyCH4V	TGCA	8 cut(s)	90, 596, 616, 695, 917, 1061, 1199, 1230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 525, 1202
HpyF3I	CTNAG	4 cut(s)	172, 282, 796, 829
HpySE526I	ACGT	2 cut(s)	79, 204
Hsp92II	CATG	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	181, 619, 777
LguI	GCTCTTC	1 cut(s)	1152
LmnI	GCTCC	2 cut(s)	594, 1186
Lsp1109I	GCAGC	3 cut(s)	307, 329, 1183
LweI	GCATC	2 cut(s)	885, 905
MaeI	CTAG	1 cut(s)	1243
MaeII	ACGT	2 cut(s)	79, 204
MaeIII	GTNAC	1 cut(s)	935
MalI	GATC	3 cut(s)	183, 621, 779
MboI	GATC	3 cut(s)	181, 619, 777
MboII	GAAGA	8 cut(s)	24, 27, 341, 574, 614, 660, 715, 1139
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	9 cut(s)	196, 469, 708, 990, 1020, 1026, 1030, 1225, 1231
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	781, 942
MmeI	TCCRAC	5 cut(s)	92, 116, 180, 445, 925
Mox20I	TGGCCA	1 cut(s)	714
MscI	TGGCCA	1 cut(s)	714
MseI	TTAA	3 cut(s)	1029, 1092, 1208
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	320
MspR9I	CCNGG	5 cut(s)	229, 375, 704, 1152, 1215
MunI	CAATTG	1 cut(s)	708
Mva1269I	GAATGC	1 cut(s)	923
MvaI	CCWGG	5 cut(s)	229, 375, 704, 1152, 1215
MwoI	GCNNNNNNNGC	3 cut(s)	54, 525, 1202
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	3 cut(s)	181, 619, 777
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	1 cut(s)	22
PaeR7I	CTCGAG	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	1152
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	1 cut(s)	923
PfeI	GAWTC	3 cut(s)	99, 503, 825
PfoI	TCCNGGA	1 cut(s)	1213
PkrI	GCNGC	4 cut(s)	319, 322, 521, 1198
PleI	GAGTC	2 cut(s)	781, 942
PpsI	GAGTC	2 cut(s)	781, 942
PpuMI	RGGWCCY	2 cut(s)	20, 1064
PshBI	ATTAAT	1 cut(s)	1029
Psp1406I	AACGTT	1 cut(s)	79
Psp5II	RGGWCCY	2 cut(s)	20, 1064
Psp6I	CCWGG	5 cut(s)	227, 373, 702, 1150, 1213
PspGI	CCWGG	5 cut(s)	227, 373, 702, 1150, 1213
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	5 cut(s)	20, 365, 475, 982, 1064
PspPPI	RGGWCCY	2 cut(s)	20, 1064
PspXI	VCTCGAGB	1 cut(s)	306
PstI	CTGCAG	1 cut(s)	1201
PstNI	CAGNNNCTG	1 cut(s)	899
PsuI	RGATCY	1 cut(s)	619
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	207, 754, 1046
RsaNI	GTAC	3 cut(s)	206, 753, 1045
SapI	GCTCTTC	1 cut(s)	1152
SaqAI	TTAA	3 cut(s)	1029, 1092, 1208
SatI	GCNGC	4 cut(s)	318, 321, 520, 1197
Sau3AI	GATC	3 cut(s)	181, 619, 777
Sau96I	GGNCC	5 cut(s)	20, 365, 475, 982, 1064
SchI	GAGTC	2 cut(s)	781, 942
ScrFI	CCNGG	5 cut(s)	229, 375, 704, 1152, 1215
SduI	GDGCHC	1 cut(s)	497
SfaNI	GCATC	2 cut(s)	885, 905
SfcI	CTRYAG	1 cut(s)	1197
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	4 cut(s)	20, 475, 982, 1064
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	306, 1039
SmoI	CTYRAG	2 cut(s)	306, 1039
Sse9I	AATT	9 cut(s)	196, 469, 708, 990, 1020, 1026, 1030, 1225, 1231
SsiI	CCGC	2 cut(s)	519, 664
SspI	AATATT	1 cut(s)	1125
SspMI	CTAG	1 cut(s)	1243
StyD4I	CCNGG	5 cut(s)	227, 373, 702, 1150, 1213
StyI	CCWWGG	2 cut(s)	186, 985
TaaI	ACNGT	5 cut(s)	13, 261, 335, 452, 913
TaiI	ACGT	2 cut(s)	82, 207
TaqI	TCGA	2 cut(s)	307, 415
TasI	AATT	9 cut(s)	196, 469, 708, 990, 1020, 1026, 1030, 1225, 1231
TauI	GCSGC	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	99, 503, 825
Tru1I	TTAA	3 cut(s)	1029, 1092, 1208
Tru9I	TTAA	3 cut(s)	1029, 1092, 1208
TscAI	CASTG	2 cut(s)	1177, 1206
TseI	GCWGC	3 cut(s)	317, 320, 1196
TspDTI	ATGAA	2 cut(s)	495, 553
TspGWI	ACGGA	2 cut(s)	30, 770
TspRI	CASTG	2 cut(s)	1177, 1206
VpaK11BI	GGWCC	4 cut(s)	20, 475, 982, 1064
VspI	ATTAAT	1 cut(s)	1029
XapI	RAATTY	3 cut(s)	196, 469, 1020
XhoI	CTCGAG	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	668
XspI	CTAG	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.