Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006746

Physical Location & Seq

Genomic Coordinates Forward (+)

8207199 .. 8210513

Gene Structure 3315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGTCTCTGCTCTCTAGTTCTTCTCTTGTTTCCGCTGCTGGTGGGTTTTGTTGGAAGAAGCAGAATCTAAAGCTCCACTCTTTATCAGAAATCCGAGTTCTGCGTTGTGATTCGAGTAAAGTTGTCGCAAAACCGAAGTTTAGGAACAATCTTGTTAGGCCTGATGGTCAAGGATCTTCATTGTTGTTGTATCCAAAACATAAGTCGAGATTTCGGGTTAATGCCACTGCGGGTCAGCCTGAGGCTTTCGACTCGAATAGCAAACAGAAGTCTTTTAGAGACTCGTTAGATGCGTTTTACAGGTTTTCTAGGCCTCATACAGTTATTGGCACAGTGCTTAGCATTTTATCTGTATCTTTCTTAGCAGTAGAGAAGGTTTCTGATATATCTCCTTTACTTTTCACTGGCATCTTGGAGGCTGTTGTTGCAGCTCTCATGATGAACATTTACATAGTTGGGCTAAATCAGTTGTCTGATGTTGAAATAGATAAGGTTAACAAGCCCTATCTTCCATTGGCATCAGGAGAATATTCTGTTAACACCGGCATTGCAATAGTAGCTTCCTTCTCCATCATGAGTTTCTGGCTTGGGTGGATTGTTGGTTCATGGCCATTGTTCTGGGCTCTTTTTGTGAGTTTCATGCTCGGTACTGCATACTCTATCAATTTGCCACTTTTACGGTGGAAAAGATTTGCATTGGTTGCAGCAATGTGTATCCTCGCTGTCCGAGCTATTATTGTTCAAATCGCCTTTTATCTACATATTCAGACACATGTGTTTGGAAGACCAATCTTGTTCACTAGGCCTCTTATTTTCGCCACTGCGTTTATGAGCTTTTTCTCTGTCGTTATTGCATTGTTTAAGGATATACCTGATATCGAAGGGGATAAGATATTCGGAATCCGATCATTCTCTGTAACTCTGGGTCAGAAACGGGTGTTTTGGACATGTGTTACACTACTTCAAATGGCTTACGCTGTTGCAATTCTAGTTGGAGCCACATCTCCATTCATATGGAGCAAAGTCATCTCGGTTGTGGGTCATGTTATACTCGCAACAACTTTGTGGGCTCGAGCTAAGTCCGTTGATCTGAGTAGCAAAACCGAAATAACTTCATGTTATATGTTCATATGGAAGCTCTTTTATGCAGAGTACTTGCTGTTACCTTTTTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006766 GO:0006775 GO:0006810 GO:0008150 GO:0008152 GO:0008610 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009507 GO:0009536 GO:0009628 GO:0009915 GO:0009987 GO:0010176 GO:0010189 GO:0010232 GO:0010233 GO:0010354 GO:0015766 GO:0015770 GO:0015772 GO:0016043 GO:0016053 GO:0016740 GO:0016765 GO:0018130 GO:0019752 GO:0031347 GO:0032501 GO:0032787 GO:0033559 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046394 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0065007 GO:0071554 GO:0071555 GO:0071702 GO:0071704 GO:0071840 GO:0072330 GO:0080134 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

393

Amino Acids

43.91

Weight (kDa)

9.74

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	119 - 381	3.1e-41	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18950 AT2G18950
fragaria_vesca	FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870
malus_domestica	MD13G1248300.v1.1 MD16G1255400.v1.1
prunus_persica	Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1
pyrus_communis	pycom13g21940 pycom16g21660
rosa_chinensis	RchiOBHm_Chr4g0401151
rosa_laevigata	RLG00000009159
rosa_multiflora	Rmu_sc0003257.1_g000019 Rmu_sc0022364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345990
rosa_rugosa	Rorug04G0028200
rosa_samantha	Rh4BG100700 Rh4DG098000
rosa_wichuraiana	Rw4G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 233
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	611
AfaI	GTAC	2 cut(s)	652, 1157
AflIII	ACRYGT	2 cut(s)	775, 950
AgsI	TTSAA	4 cut(s)	485, 746, 968, 1177
AloI	GAACNNNNNNTCC	2 cut(s)	589, 621
AluBI	AGCT	7 cut(s)	76, 434, 563, 734, 837, 1079, 1141
AluI	AGCT	7 cut(s)	76, 434, 563, 734, 837, 1079, 1141
Alw26I	GTCTC	2 cut(s)	12, 276
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	1074
AoxI	GGCC	4 cut(s)	161, 314, 611, 806
ApeKI	GCWGC	3 cut(s)	38, 431, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AvaI	CYCGRG	1 cut(s)	1074
AxyI	CCTNAGG	1 cut(s)	243
BalI	TGGCCA	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	628, 1075
BbsI	GAAGAC	1 cut(s)	793
BbvI	GCAGC	3 cut(s)	25, 443, 719
BccI	CCATC	2 cut(s)	161, 581
BciVI	GTATCC	2 cut(s)	204, 728
BcoDI	GTCTC	2 cut(s)	12, 276
BfaI	CTAG	4 cut(s)	18, 312, 804, 992
BfuI	GTATCC	2 cut(s)	204, 728
BisI	GCNGC	3 cut(s)	39, 432, 708
BlpI	GCTNAGC	1 cut(s)	341
BlsI	GCNGC	3 cut(s)	40, 433, 709
BmcAI	AGTACT	1 cut(s)	1157
BmeT110I	CYCGRG	1 cut(s)	1074
BmiI	GGNNCC	1 cut(s)	1000
BmsI	GCATC	3 cut(s)	283, 420, 530
BpiI	GAAGAC	1 cut(s)	793
Bpu1102I	GCTNAGC	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	1 cut(s)	412
Bse21I	CCTNAGG	1 cut(s)	243
Bse3DI	GCAATG	2 cut(s)	549, 717
BseMI	GCAATG	2 cut(s)	549, 717
BseMII	CTCAG	2 cut(s)	234, 1085
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	25, 443, 719
BshFI	GGCC	4 cut(s)	163, 316, 613, 808
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	1 cut(s)	546
BsmAI	GTCTC	2 cut(s)	12, 276
BsnI	GGCC	4 cut(s)	163, 316, 613, 808
BsoBI	CYCGRG	1 cut(s)	1074
Bsp1286I	GDGCHC	2 cut(s)	628, 1075
Bsp143I	GATC	3 cut(s)	176, 908, 1090
Bsp1720I	GCTNAGC	1 cut(s)	341
BspACI	CCGC	2 cut(s)	36, 233
BspANI	GGCC	4 cut(s)	163, 316, 613, 808
BspCNI	CTCAG	2 cut(s)	235, 1086
BspHI	TCATGA	2 cut(s)	438, 576
BspLI	GGNNCC	1 cut(s)	1000
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	2 cut(s)	549, 717
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	545
BssMI	GATC	3 cut(s)	176, 908, 1090
Bst4CI	ACNGT	3 cut(s)	325, 337, 684
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstDEI	CTNAG	5 cut(s)	243, 341, 364, 1080, 1094
BstKTI	GATC	3 cut(s)	179, 911, 1093
BstMAI	GTCTC	2 cut(s)	12, 276
BstMBI	GATC	3 cut(s)	176, 908, 1090
BstMWI	GCNNNNNNNGC	4 cut(s)	428, 560, 704, 731
BstNSI	RCATGY	2 cut(s)	779, 954
BstV1I	GCAGC	3 cut(s)	25, 443, 719
BstV2I	GAAGAC	1 cut(s)	793
BstX2I	RGATCY	1 cut(s)	176
BstXI	CCANNNNNNTGG	2 cut(s)	621, 1017
BstYI	RGATCY	1 cut(s)	176
Bsu36I	CCTNAGG	1 cut(s)	243
BsuI	GTATCC	2 cut(s)	204, 728
BsuRI	GGCC	4 cut(s)	163, 316, 613, 808
BtsI	GCAGTG	2 cut(s)	228, 822
BtsIMutI	CAGTG	4 cut(s)	228, 342, 405, 822
CciI	TCATGA	2 cut(s)	438, 576
Cfr10I	RCCGGY	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	651, 1156
CviAII	CATG	8 cut(s)	439, 577, 609, 643, 776, 951, 1046, 1119
CviQI	GTAC	2 cut(s)	651, 1156
DdeI	CTNAG	5 cut(s)	243, 341, 364, 1080, 1094
DpnI	GATC	3 cut(s)	178, 910, 1092
DpnII	GATC	3 cut(s)	176, 908, 1090
EaeI	YGGCCR	1 cut(s)	611
Eco147I	AGGCCT	3 cut(s)	163, 316, 808
Eco24I	GRGCYC	2 cut(s)	628, 1075
Eco32I	GATATC	1 cut(s)	880
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	1074
EcoRV	GATATC	1 cut(s)	880
EcoT38I	GRGCYC	2 cut(s)	628, 1075
FaeI	CATG	8 cut(s)	442, 580, 612, 646, 779, 954, 1049, 1122
FatI	CATG	8 cut(s)	438, 576, 608, 642, 775, 950, 1045, 1118
FauI	CCCGC	1 cut(s)	226
FauNDI	CATATG	2 cut(s)	1016, 1133
Fnu4HI	GCNGC	3 cut(s)	39, 432, 708
FriOI	GRGCYC	2 cut(s)	628, 1075
Fsp4HI	GCNGC	3 cut(s)	39, 432, 708
FspBI	CTAG	4 cut(s)	18, 312, 804, 992
GluI	GCNGC	3 cut(s)	39, 432, 708
HaeIII	GGCC	4 cut(s)	163, 316, 613, 808
HapII	CCGG	1 cut(s)	546
Hin1II	CATG	8 cut(s)	442, 580, 612, 646, 779, 954, 1049, 1122
HincII	GTYRAC	2 cut(s)	499, 541
HindII	GTYRAC	2 cut(s)	499, 541
HinfI	GANTC	6 cut(s)	5, 67, 113, 254, 284, 903
HpaI	GTTAAC	2 cut(s)	499, 541
HpaII	CCGG	1 cut(s)	546
Hpy166II	GTNNAC	3 cut(s)	499, 541, 801
Hpy188III	TCNNGA	4 cut(s)	210, 439, 525, 577
Hpy8I	GTNNAC	3 cut(s)	499, 541, 801
HpyAV	CCTTC	3 cut(s)	370, 577, 878
HpyCH4III	ACNGT	3 cut(s)	325, 337, 684
HpyCH4V	TGCA	8 cut(s)	431, 554, 656, 698, 707, 857, 986, 1151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	428, 560, 704, 731
HpyF3I	CTNAG	5 cut(s)	243, 341, 364, 1080, 1094
Hsp92II	CATG	8 cut(s)	442, 580, 612, 646, 779, 954, 1049, 1122
KspAI	GTTAAC	2 cut(s)	499, 541
Kzo9I	GATC	3 cut(s)	176, 908, 1090
LmnI	GCTCC	3 cut(s)	81, 998, 1020
Lsp1109I	GCAGC	3 cut(s)	25, 443, 719
LweI	GCATC	3 cut(s)	283, 420, 530
MaeI	CTAG	4 cut(s)	18, 312, 804, 992
MaeIII	GTNAC	3 cut(s)	919, 955, 1164
MalI	GATC	3 cut(s)	178, 910, 1092
MboI	GATC	3 cut(s)	176, 908, 1090
MboII	GAAGA	5 cut(s)	15, 70, 171, 503, 798
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	2 cut(s)	628, 1075
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	2 cut(s)	667, 987
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	3 cut(s)	14, 248, 278
MmeI	TCCRAC	2 cut(s)	35, 976
MnlI	CCTC	5 cut(s)	238, 327, 412, 731, 819
Mox20I	TGGCCA	1 cut(s)	613
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	4 cut(s)	222, 498, 540, 864
MslI	CAYNNNNRTG	1 cut(s)	1015
Msp20I	TGGCCA	1 cut(s)	613
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	546
MwoI	GCNNNNNNNGC	4 cut(s)	428, 560, 704, 731
NdeI	CATATG	2 cut(s)	1016, 1133
NdeII	GATC	3 cut(s)	176, 908, 1090
NlaIII	CATG	8 cut(s)	442, 580, 612, 646, 779, 954, 1049, 1122
NlaIV	GGNNCC	1 cut(s)	1000
NspI	RCATGY	2 cut(s)	779, 954
PaeR7I	CTCGAG	1 cut(s)	1074
PagI	TCATGA	2 cut(s)	438, 576
PceI	AGGCCT	3 cut(s)	163, 316, 808
PciI	ACATGT	2 cut(s)	775, 950
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	3 cut(s)	67, 113, 903
PkrI	GCNGC	3 cut(s)	40, 433, 709
PleI	GAGTC	3 cut(s)	13, 248, 278
PpsI	GAGTC	3 cut(s)	13, 248, 278
PscI	ACATGT	2 cut(s)	775, 950
PspN4I	GGNNCC	1 cut(s)	1000
PspXI	VCTCGAGB	1 cut(s)	1074
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	2 cut(s)	652, 1157
RsaNI	GTAC	2 cut(s)	651, 1156
RseI	CAYNNNNRTG	1 cut(s)	1015
SaqAI	TTAA	4 cut(s)	222, 498, 540, 864
SatI	GCNGC	3 cut(s)	39, 432, 708
Sau3AI	GATC	3 cut(s)	176, 908, 1090
ScaI	AGTACT	1 cut(s)	1157
SchI	GAGTC	3 cut(s)	14, 248, 278
SduI	GDGCHC	2 cut(s)	628, 1075
SfaNI	GCATC	3 cut(s)	283, 420, 530
Sfr274I	CTCGAG	1 cut(s)	1074
SlaI	CTCGAG	1 cut(s)	1074
SmiMI	CAYNNNNRTG	1 cut(s)	1015
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
Sse9I	AATT	2 cut(s)	667, 987
SseBI	AGGCCT	3 cut(s)	163, 316, 808
SsiI	CCGC	2 cut(s)	36, 233
SspI	AATATT	1 cut(s)	533
SspMI	CTAG	4 cut(s)	18, 312, 804, 992
StuI	AGGCCT	3 cut(s)	163, 316, 808
TaaI	ACNGT	3 cut(s)	325, 337, 684
TaqI	TCGA	6 cut(s)	116, 209, 252, 257, 882, 1075
TasI	AATT	2 cut(s)	667, 987
TatI	WGTACW	1 cut(s)	1155
TfiI	GAWTC	3 cut(s)	67, 113, 903
Tru1I	TTAA	4 cut(s)	222, 498, 540, 864
Tru9I	TTAA	4 cut(s)	222, 498, 540, 864
TscAI	CASTG	4 cut(s)	235, 342, 412, 829
TseI	GCWGC	3 cut(s)	38, 431, 707
TspDTI	ATGAA	7 cut(s)	171, 458, 597, 631, 1003, 1107, 1120
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	4 cut(s)	235, 342, 412, 829
XceI	RCATGY	2 cut(s)	779, 954
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XhoI	CTCGAG	1 cut(s)	1074
XspI	CTAG	4 cut(s)	18, 312, 804, 992
ZrmI	AGTACT	1 cut(s)	1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.