Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006746

Physical Location & Seq

Genomic Coordinates Reverse (-)

6112114 .. 6119524

Gene Structure 7411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G082500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGATTCTGCGCTTCTTGTGTCCTTTCCAAATGCTTCTGTAGGTGGGAACGGTTGGAGAAAGGGCAATCTCAACAAGAGCTTTTCAGGTTCATATGCAGCAGTCAGAGTTTCAAGAAGCAGAGCATGGGACATCTTGGAAAGATATTGTGGTGTTGGGTCTCAGCAACATCTTTTGAAGCATCACACCAGAAACACTAAGGAAAAATCTGCATTCTACAGGAGGCATGGTAAAAGGTTGTTGGTGAATGCTACTGCTGGTCATCCTCTTGAATCCGAACCTGGAGCTTGTAATTCGAAAAGCAAATGGAACTCTATCAAAAATGCCATAGATGCTTTTTACAGGTTTTCAAGGCCGCACACAGTTATAGGCACAGCATTGAGCATAATTTCAGTTTCTCTACTTGCAGTTGAGAATCTGTCAGATTTTTCACCCTTATTTTTCACAGGAGTGCTGGAGGCCGTAGTTGCTGCTCTCTTTATGAATATTTACATTGTTGGTTTGAATCAGTTGTCTGACATTGATATAGACAAGGTTAACAAGCCTTATCTTCCATTGGCATCAGGGGAATATTCAGTTGGGACTGGCATCATGATTGTCACATCTTTTCTACTTCTGAGTTTTTGGCTTGGATGGGTTGTTGGTTCATGGCCATTGTTTTGGGCCCTTTTCATCAGTTTTGTCCTTGGAACTGCTTATTCAATCAACTTGCCACTATTGAGATGGAAGAGATCTGCTGTGGTTGCAGCAATGTGCATCCTAGCTGTTCGGGCAGTGATAGTTCAACTTGCTTTTTTCCTGCACATGCAGATTCATGTGTACAAAAGACCAGCTGCCTTTTCTAGGCCACTAATTTTTGCAACTGCATTTATGAGCTTCTTCTCAGTTGTTATAGCATTATTTAAGGACATACCTGATATTGATGGAGATAAAATATTCGGCATTCGGTCTTTTACAGTACGTCTGGGACAAAAGCGGGTCTTTTGGATTTGTATTTCGCTACTTGAAATGGCTTACAGTGTTGCCGTTTTAGTGGGAGCATCATCCAGCTTCCTGATGAGCAAATGCATCACGGTTTTGGGACATGCAATTTTGGCTTCGATACTCTGGAATCGAGCCAAATCTGTTGATCTCAACAGCAAAGCTGCAATAACAACCTTTTACATGTTTATATGGAAGCTCTTCTATGCTGAGTATCTACTTATACCACTTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006766 GO:0006775 GO:0006810 GO:0008150 GO:0008152 GO:0008610 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009507 GO:0009536 GO:0009628 GO:0009915 GO:0009987 GO:0010176 GO:0010189 GO:0010232 GO:0010233 GO:0010354 GO:0015766 GO:0015770 GO:0015772 GO:0016043 GO:0016053 GO:0016740 GO:0016765 GO:0018130 GO:0019752 GO:0031347 GO:0032501 GO:0032787 GO:0033559 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046394 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0065007 GO:0071554 GO:0071555 GO:0071702 GO:0071704 GO:0071840 GO:0072330 GO:0080134 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

407

Amino Acids

45.25

Weight (kDa)

9.89

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18950 AT2G18950
fragaria_vesca	FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870
malus_domestica	MD13G1248300.v1.1 MD16G1255400.v1.1
prunus_persica	Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1
pyrus_communis	pycom13g21940 pycom16g21660
rosa_chinensis	RchiOBHm_Chr4g0401151
rosa_laevigata	RLG00000009159
rosa_multiflora	Rmu_sc0003257.1_g000019 Rmu_sc0022364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345990
rosa_rugosa	Rorug04G0028200
rosa_samantha	Rh4BG100700 Rh4DG098000
rosa_wichuraiana	Rw4G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	356, 976
AcoI	YGGCCR	1 cut(s)	650
AfaI	GTAC	2 cut(s)	821, 960
AfiI	CCNNNNNNNGG	1 cut(s)	843
AflIII	ACRYGT	1 cut(s)	1164
AgsI	TTSAA	8 cut(s)	114, 178, 272, 351, 505, 702, 785, 1007
AjnI	CCWGG	1 cut(s)	280
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	8 cut(s)	81, 287, 764, 833, 876, 1050, 1145, 1180
AluI	AGCT	8 cut(s)	81, 287, 764, 833, 876, 1050, 1145, 1180
Alw26I	GTCTC	1 cut(s)	165
AoxI	GGCC	5 cut(s)	353, 459, 650, 663, 845
ApaI	GGGCCC	1 cut(s)	667
ApeKI	GCWGC	5 cut(s)	98, 470, 746, 833, 1145
Asp700I	GAANNNNTTC	1 cut(s)	1181
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	663, 664
AsuHPI	GGTGA	2 cut(s)	256, 423
AsuII	TTCGAA	1 cut(s)	296
BaeGI	GKGCMC	1 cut(s)	667
BalI	TGGCCA	1 cut(s)	652
BanII	GRGCYC	1 cut(s)	667
BbvI	GCAGC	5 cut(s)	110, 457, 758, 820, 1132
BccI	CCATC	3 cut(s)	627, 717, 917
BceAI	ACGGC	2 cut(s)	446, 1010
BciT130I	CCWGG	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	761, 843
BfmI	CTRYAG	2 cut(s)	39, 217
BglII	AGATCT	1 cut(s)	731
BisI	GCNGC	6 cut(s)	99, 356, 471, 747, 834, 1146
BlsI	GCNGC	6 cut(s)	100, 357, 472, 748, 835, 1147
Bme1390I	CCNGG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	663, 664
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	7 cut(s)	190, 322, 569, 597, 765, 1049, 1077
BpmI	CTGGAG	2 cut(s)	303, 476
Bpu14I	TTCGAA	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	685
BseGI	GGATG	4 cut(s)	262, 638, 756, 1043
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	4 cut(s)	176, 608, 897, 1182
BseNI	ACTGG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	5 cut(s)	110, 457, 758, 820, 1132
BsgI	GTGCAG	1 cut(s)	785
BshFI	GGCC	5 cut(s)	355, 461, 652, 665, 847
BslFI	GGGAC	4 cut(s)	143, 595, 981, 1095
BslI	CCNNNNNNNGG	1 cut(s)	843
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	4 cut(s)	143, 595, 981, 1095
BsmI	GAATGC	3 cut(s)	212, 253, 942
BsnI	GGCC	5 cut(s)	355, 461, 652, 665, 847
Bso31I	GGTCTC	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	296
Bsp120I	GGGCCC	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	2 cut(s)	731, 1129
BspACI	CCGC	2 cut(s)	356, 976
BspANI	GGCC	5 cut(s)	355, 461, 652, 665, 847
BspCNI	CTCAG	4 cut(s)	175, 609, 896, 1183
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	665
BspQI	GCTCTTC	1 cut(s)	1187
BspT104I	TTCGAA	1 cut(s)	296
BspTNI	GGTCTC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	756
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	1 cut(s)	589
BssECI	CCNNGG	1 cut(s)	685
BssMI	GATC	2 cut(s)	731, 1129
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	5 cut(s)	53, 364, 958, 1019, 1075
Bst6I	CTCTTC	2 cut(s)	722, 1187
BstAUI	TGTACA	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	296
BstDEI	CTNAG	5 cut(s)	162, 198, 617, 883, 1191
BstENI	CCTNNNNNAGG	1 cut(s)	841
BstF5I	GGATG	4 cut(s)	262, 638, 756, 1043
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	734, 1132
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	731, 1129
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 467, 743, 770, 1094
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	3 cut(s)	808, 1088, 1168
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	2 cut(s)	39, 217
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	5 cut(s)	110, 457, 758, 820, 1132
BstX2I	RGATCY	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	731
BsuRI	GGCC	5 cut(s)	355, 461, 652, 665, 847
BtsCI	GGATG	4 cut(s)	262, 638, 756, 1043
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	780, 1024
CciI	TCATGA	1 cut(s)	591
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	663, 664
Csp6I	GTAC	2 cut(s)	820, 959
CviAII	CATG	8 cut(s)	126, 227, 592, 648, 805, 815, 1085, 1165
CviQI	GTAC	2 cut(s)	820, 959
DdeI	CTNAG	5 cut(s)	162, 198, 617, 883, 1191
DpnI	GATC	2 cut(s)	733, 1131
DpnII	GATC	2 cut(s)	731, 1129
EaeI	YGGCCR	1 cut(s)	650
Eam1104I	CTCTTC	2 cut(s)	722, 1187
EarI	CTCTTC	2 cut(s)	722, 1187
Eco130I	CCWWGG	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	685
EcoT22I	ATGCAT	1 cut(s)	1070
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	685
FaeI	CATG	8 cut(s)	129, 230, 595, 651, 808, 818, 1088, 1168
FalI	AAGNNNNNCTT	2 cut(s)	965, 997
FaqI	GGGAC	4 cut(s)	143, 595, 981, 1095
FatI	CATG	8 cut(s)	125, 226, 591, 647, 804, 814, 1084, 1164
FauI	CCCGC	1 cut(s)	969
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	6 cut(s)	99, 356, 471, 747, 834, 1146
FokI	GGATG	4 cut(s)	249, 645, 743, 1030
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	6 cut(s)	99, 356, 471, 747, 834, 1146
FspBI	CTAG	2 cut(s)	761, 843
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	6 cut(s)	99, 356, 471, 747, 834, 1146
GsuI	CTGGAG	2 cut(s)	303, 476
HaeIII	GGCC	5 cut(s)	355, 461, 652, 665, 847
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	8 cut(s)	129, 230, 595, 651, 808, 818, 1088, 1168
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	6 cut(s)	5, 272, 415, 505, 811, 1111
HpaI	GTTAAC	1 cut(s)	538
HphI	GGTGA	2 cut(s)	256, 423
Hpy166II	GTNNAC	2 cut(s)	538, 820
Hpy188I	TCNGA	5 cut(s)	107, 277, 424, 517, 618
Hpy188III	TCNNGA	5 cut(s)	114, 269, 592, 1054, 1108
Hpy8I	GTNNAC	2 cut(s)	538, 820
HpyCH4III	ACNGT	5 cut(s)	53, 364, 958, 1019, 1075
HpyCH4IV	ACGT	1 cut(s)	961
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 467, 743, 770, 1094
HpyF3I	CTNAG	5 cut(s)	162, 198, 617, 883, 1191
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	8 cut(s)	129, 230, 595, 651, 808, 818, 1088, 1168
HspAI	GCGC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	731, 1129
LguI	GCTCTTC	1 cut(s)	1187
LmnI	GCTCC	2 cut(s)	284, 1037
Lsp1109I	GCAGC	5 cut(s)	110, 457, 758, 820, 1132
LweI	GCATC	7 cut(s)	190, 322, 569, 597, 765, 1049, 1077
MaeI	CTAG	2 cut(s)	761, 843
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	2 cut(s)	733, 1131
MboI	GATC	2 cut(s)	731, 1129
MboII	GAAGA	4 cut(s)	542, 739, 871, 1174
MflI	RGATCY	1 cut(s)	731
MhlI	GDGCHC	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	652
MluCI	AATT	4 cut(s)	292, 387, 852, 1089
MluNI	TGGCCA	1 cut(s)	652
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	216, 276, 451
Mox20I	TGGCCA	1 cut(s)	652
Mph1103I	ATGCAT	1 cut(s)	1070
MroXI	GAANNNNTTC	1 cut(s)	1181
MscI	TGGCCA	1 cut(s)	652
MseI	TTAA	2 cut(s)	537, 903
MslI	CAYNNNNRTG	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	652
MspA1I	CMGCKG	1 cut(s)	833
MspR9I	CCNGG	1 cut(s)	282
Mva1269I	GAATGC	3 cut(s)	212, 253, 942
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	5 cut(s)	332, 467, 743, 770, 1094
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	2 cut(s)	731, 1129
NlaIII	CATG	8 cut(s)	129, 230, 595, 651, 808, 818, 1088, 1168
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	1070
NspI	RCATGY	3 cut(s)	808, 1088, 1168
NspV	TTCGAA	1 cut(s)	296
OliI	CACNNNNGTG	1 cut(s)	449
PagI	TCATGA	1 cut(s)	591
PciI	ACATGT	1 cut(s)	1164
PciSI	GCTCTTC	1 cut(s)	1187
PctI	GAATGC	3 cut(s)	212, 253, 942
PdmI	GAANNNNTTC	1 cut(s)	1181
PfeI	GAWTC	6 cut(s)	5, 272, 415, 505, 811, 1111
PkrI	GCNGC	6 cut(s)	100, 357, 472, 748, 835, 1147
PscI	ACATGT	1 cut(s)	1164
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	665
PspOMI	GGGCCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	663, 664
PsuI	RGATCY	1 cut(s)	731
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	821, 960
RsaNI	GTAC	2 cut(s)	820, 959
RseI	CAYNNNNRTG	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	1187
SaqAI	TTAA	2 cut(s)	537, 903
SatI	GCNGC	6 cut(s)	99, 356, 471, 747, 834, 1146
Sau3AI	GATC	2 cut(s)	731, 1129
Sau96I	GGNCC	2 cut(s)	663, 664
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	7 cut(s)	190, 322, 569, 597, 765, 1049, 1077
SfcI	CTRYAG	2 cut(s)	39, 217
SfuI	TTCGAA	1 cut(s)	296
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	4 cut(s)	292, 387, 852, 1089
SsiI	CCGC	2 cut(s)	356, 976
SspI	AATATT	3 cut(s)	487, 572, 936
SspMI	CTAG	2 cut(s)	761, 843
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	5 cut(s)	53, 364, 958, 1019, 1075
TaiI	ACGT	1 cut(s)	964
TaqI	TCGA	3 cut(s)	296, 1100, 1114
TaqII	GACCGA	1 cut(s)	936
TasI	AATT	4 cut(s)	292, 387, 852, 1089
TatI	WGTACW	1 cut(s)	819
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	6 cut(s)	5, 272, 415, 505, 811, 1111
Tru1I	TTAA	2 cut(s)	537, 903
Tru9I	TTAA	2 cut(s)	537, 903
TscAI	CASTG	2 cut(s)	780, 1024
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	5 cut(s)	98, 470, 746, 833, 1145
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	5 cut(s)	81, 497, 636, 661, 803
TspRI	CASTG	2 cut(s)	780, 1024
XagI	CCTNNNNNAGG	1 cut(s)	841
XceI	RCATGY	3 cut(s)	808, 1088, 1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	1181
XspI	CTAG	2 cut(s)	761, 843
Zsp2I	ATGCAT	1 cut(s)	1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.