Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022364.1

Orthogroup ID

OG0006746

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5686

Gene Structure 5686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1181 bp

gtggaaacagttggagaagggagaatctcaagaagatttgcttttcgggttcgtatagtgcagtcagagtttcaaggtgcagagaatgggacatcctgcaaagatactgtgctgttgggtctctgcatcctcaacagcgtaagcatcataacacaggcaccaaggaaaattctacatcctacaggaggcataaaaggttcctggtgaatgcaactgctggtcacccccttgattctgaacccggagcttataatgcgaaaaacgtttggaacactatgaaaaatgcaacggatgctttttaccggttttcaaggccgcacacagttataggcacagcattgagcatagtttcggtttctctccttgcagtccagaatctgtcagatttttctcccttatttttcactgggttgctggaggctgtaattgctgctcttttaatgaatatttacattgtcggtttaaatcagttgtctgacattgatatagacaaggttaacaagccttatcttccattggcatcaggggaatattcagttgggactggcatcatgattgtcacttcttttgttgttatgagtttttggctgggatggattgttggttcatggcccttgttttgggcccttttcatcagttttgtactgggaactgcttattcaatcaatgtgccactactgagatggaagaggtctgctgtggttgcagcaatgtgcatcctagctgttcgagcagtgatagttcaacttgcttttttcctgcacatgcagacccatgtgtacaaaagaccggctgcgttctcgaggccactaatctttgcaacagcatttatgagtttcttctctgttgttatagcattatttaaggacatacctgatattgatggagataaaatatttggcatccggtcttttacagtgcgtctgggacaaaagcgggtattttggacatgtatatggctacttcaaatggcttatggtgtggccattttagtgggagcaacatccaccttcatgttgagcaaatgcatcacggttttgggacatgcaattttggcttcgatactctggagccgagcaaaatctgtcgatctcaccagcaaagctgcaataacaaccttctacatgtttatatggaagctcttttatgctgagtatctacttatcccacttgttcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006766 GO:0006775 GO:0006810 GO:0008150 GO:0008152 GO:0008610 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009507 GO:0009536 GO:0009628 GO:0009915 GO:0009987 GO:0010176 GO:0010189 GO:0010232 GO:0010233 GO:0010354 GO:0015766 GO:0015770 GO:0015772 GO:0016043 GO:0016053 GO:0016740 GO:0016765 GO:0018130 GO:0019752 GO:0031347 GO:0032501 GO:0032787 GO:0033559 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046394 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0065007 GO:0071554 GO:0071555 GO:0071702 GO:0071704 GO:0071840 GO:0072330 GO:0080134 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

392

Amino Acids

44.18

Weight (kDa)

9.92

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18950 AT2G18950
fragaria_vesca	FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870
malus_domestica	MD13G1248300.v1.1 MD16G1255400.v1.1
prunus_persica	Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1
pyrus_communis	pycom13g21940 pycom16g21660
rosa_chinensis	RchiOBHm_Chr4g0401151
rosa_laevigata	RLG00000009159
rosa_multiflora	Rmu_sc0003257.1_g000019 Rmu_sc0022364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345990
rosa_rugosa	Rorug04G0028200
rosa_samantha	Rh4BG100700 Rh4DG098000
rosa_wichuraiana	Rw4G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	316, 936
AclI	AACGTT	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	983
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	2 cut(s)	644, 781
AfiI	CCNNNNNNNGG	2 cut(s)	185, 620
AflIII	ACRYGT	2 cut(s)	949, 1124
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	5 cut(s)	74, 311, 662, 745, 967
AjnI	CCWGG	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AloI	GAACNNNNNNTCC	2 cut(s)	588, 620
AluBI	AGCT	4 cut(s)	247, 724, 1105, 1140
AluI	AGCT	4 cut(s)	247, 724, 1105, 1140
Alw26I	GTCTC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	5 cut(s)	313, 610, 623, 805, 983
ApaI	GGGCCC	1 cut(s)	627
ApeKI	GCWGC	4 cut(s)	430, 706, 793, 1105
ApoI	RAATTY	1 cut(s)	168
AsiGI	ACCGGT	1 cut(s)	302
AspS9I	GGNCC	3 cut(s)	611, 623, 624
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	214, 216, 1086
AvaI	CYCGRG	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	985
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	627
BbvI	GCAGC	4 cut(s)	417, 718, 780, 1092
BccI	CCATC	3 cut(s)	587, 677, 877
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	5 cut(s)	316, 431, 707, 794, 1106
BlsI	GCNGC	5 cut(s)	317, 432, 708, 795, 1107
Bme1390I	CCNGG	2 cut(s)	202, 242
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	3 cut(s)	611, 623, 624
BmiI	GGNNCC	4 cut(s)	159, 199, 625, 1072
BmrFI	CCNGG	2 cut(s)	202, 242
BmrI	ACTGGG	2 cut(s)	416, 655
BmsI	GCATC	8 cut(s)	135, 153, 282, 529, 557, 725, 911, 1037
BmuI	ACTGGG	2 cut(s)	416, 655
BpmI	CTGGAG	2 cut(s)	436, 1089
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	161
BsaWI	WCCGGW	2 cut(s)	302, 905
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 620
Bse118I	RCCGGY	2 cut(s)	302, 789
Bse1I	ACTGG	3 cut(s)	411, 549, 650
Bse3DI	GCAATG	1 cut(s)	716
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	161
BseGI	GGATG	8 cut(s)	92, 126, 175, 297, 598, 716, 902, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	185, 620
BseMI	GCAATG	1 cut(s)	716
BseMII	CTCAG	2 cut(s)	670, 1142
BseNI	ACTGG	3 cut(s)	411, 549, 650
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	4 cut(s)	417, 718, 780, 1092
BseYI	CCCAGC	1 cut(s)	588
BsgI	GTGCAG	3 cut(s)	80, 99, 745
BshFI	GGCC	5 cut(s)	315, 612, 625, 807, 985
BshNI	GGYRCC	1 cut(s)	157
BshTI	ACCGGT	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	4 cut(s)	242, 303, 790, 906
BslFI	GGGAC	4 cut(s)	103, 555, 941, 1055
BslI	CCNNNNNNNGG	2 cut(s)	185, 620
BsmAI	GTCTC	1 cut(s)	125
BsmFI	GGGAC	4 cut(s)	103, 555, 941, 1055
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	5 cut(s)	315, 612, 625, 807, 985
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	801
Bsp120I	GGGCCC	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp1407I	TGTACA	1 cut(s)	779
Bsp143I	GATC	1 cut(s)	1089
BspACI	CCGC	2 cut(s)	316, 936
BspANI	GGCC	5 cut(s)	315, 612, 625, 807, 985
BspCNI	CTCAG	2 cut(s)	671, 1143
BspHI	TCATGA	1 cut(s)	551
BspLI	GGNNCC	4 cut(s)	159, 199, 625, 1072
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	716
BsrFI	RCCGGY	2 cut(s)	302, 789
BsrGI	TGTACA	1 cut(s)	779
BsrI	ACTGG	3 cut(s)	411, 549, 650
BssAI	RCCGGY	2 cut(s)	302, 789
BssECI	CCNNGG	1 cut(s)	161
BssMI	GATC	1 cut(s)	1089
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	5 cut(s)	10, 109, 324, 918, 1035
Bst6I	CTCTTC	1 cut(s)	682
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstAUI	TGTACA	1 cut(s)	779
BstDEI	CTNAG	2 cut(s)	679, 1151
BstEII	GGTNACC	1 cut(s)	220
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	8 cut(s)	92, 126, 175, 297, 598, 716, 902, 1003
BstKTI	GATC	1 cut(s)	1092
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	1089
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 292, 427, 703, 730, 1054
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	4 cut(s)	768, 953, 1048, 1128
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	200, 240
BstSFI	CTRYAG	1 cut(s)	180
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	417, 718, 780, 1092
BstXI	CCANNNNNNTGG	1 cut(s)	993
BsuRI	GGCC	5 cut(s)	315, 612, 625, 807, 985
BtsCI	GGATG	8 cut(s)	92, 126, 175, 297, 598, 716, 902, 1003
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	3 cut(s)	404, 740, 923
CaiI	CAGNNNCTG	1 cut(s)	378
CciI	TCATGA	1 cut(s)	551
Cfr10I	RCCGGY	2 cut(s)	302, 789
Cfr13I	GGNCC	3 cut(s)	611, 623, 624
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	2 cut(s)	643, 780
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	8 cut(s)	552, 608, 765, 775, 950, 1014, 1045, 1125
CviQI	GTAC	2 cut(s)	643, 780
DdeI	CTNAG	2 cut(s)	679, 1151
DpnI	GATC	1 cut(s)	1091
DpnII	GATC	1 cut(s)	1089
DraI	TTTAAA	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	983
Eam1104I	CTCTTC	1 cut(s)	682
EarI	CTCTTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	125
Eco88I	CYCGRG	1 cut(s)	801
Eco91I	GGTNACC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	624
EcoO65I	GGTNACC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	161
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	1 cut(s)	161
FaeI	CATG	8 cut(s)	555, 611, 768, 778, 953, 1017, 1048, 1128
FalI	AAGNNNNNCTT	2 cut(s)	25, 57
FaqI	GGGAC	4 cut(s)	103, 555, 941, 1055
FatI	CATG	8 cut(s)	551, 607, 764, 774, 949, 1013, 1044, 1124
FauI	CCCGC	1 cut(s)	929
Fnu4HI	GCNGC	5 cut(s)	316, 431, 707, 794, 1106
FokI	GGATG	8 cut(s)	79, 113, 162, 304, 605, 703, 889, 990
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	5 cut(s)	316, 431, 707, 794, 1106
FspBI	CTAG	1 cut(s)	721
GluI	GCNGC	5 cut(s)	316, 431, 707, 794, 1106
GsaI	CCCAGC	1 cut(s)	592
GsuI	CTGGAG	2 cut(s)	436, 1089
HaeIII	GGCC	5 cut(s)	315, 612, 625, 807, 985
HapII	CCGG	4 cut(s)	242, 303, 790, 906
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	8 cut(s)	555, 611, 768, 778, 953, 1017, 1048, 1128
HincII	GTYRAC	1 cut(s)	498
HindII	GTYRAC	1 cut(s)	498
HinfI	GANTC	3 cut(s)	24, 232, 375
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	4 cut(s)	242, 303, 790, 906
HphI	GGTGA	3 cut(s)	214, 216, 1086
Hpy166II	GTNNAC	2 cut(s)	498, 780
Hpy188I	TCNGA	4 cut(s)	67, 237, 384, 477
Hpy188III	TCNNGA	5 cut(s)	30, 372, 552, 801, 1068
Hpy8I	GTNNAC	2 cut(s)	498, 780
HpyAV	CCTTC	3 cut(s)	11, 1020, 1128
HpyCH4III	ACNGT	5 cut(s)	10, 109, 324, 918, 1035
HpyCH4IV	ACGT	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 292, 427, 703, 730, 1054
HpyF3I	CTNAG	2 cut(s)	679, 1151
HpySE526I	ACGT	1 cut(s)	263
Hsp92II	CATG	8 cut(s)	555, 611, 768, 778, 953, 1017, 1048, 1128
KspAI	GTTAAC	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	1089
LmnI	GCTCC	3 cut(s)	244, 997, 1070
Lsp1109I	GCAGC	4 cut(s)	417, 718, 780, 1092
LweI	GCATC	8 cut(s)	135, 153, 282, 529, 557, 725, 911, 1037
MaeI	CTAG	1 cut(s)	721
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	220, 558
MalI	GATC	1 cut(s)	1091
MboI	GATC	1 cut(s)	1089
MboII	GAAGA	4 cut(s)	45, 502, 699, 831
MhlI	GDGCHC	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	985
MluCI	AATT	3 cut(s)	168, 425, 1049
MluNI	TGGCCA	1 cut(s)	985
MnlI	CCTC	5 cut(s)	140, 179, 411, 683, 797
Mox20I	TGGCCA	1 cut(s)	985
Mph1103I	ATGCAT	1 cut(s)	1030
MscI	TGGCCA	1 cut(s)	985
MseI	TTAA	4 cut(s)	439, 463, 497, 863
MslI	CAYNNNNRTG	3 cut(s)	954, 991, 1012
Msp20I	TGGCCA	1 cut(s)	985
MspI	CCGG	4 cut(s)	242, 303, 790, 906
MspR9I	CCNGG	2 cut(s)	202, 242
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	6 cut(s)	253, 292, 427, 703, 730, 1054
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	1089
NlaIII	CATG	8 cut(s)	555, 611, 768, 778, 953, 1017, 1048, 1128
NlaIV	GGNNCC	4 cut(s)	159, 199, 625, 1072
NmeAIII	GCCGAG	1 cut(s)	1099
NmuCI	GTSAC	2 cut(s)	220, 558
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	4 cut(s)	768, 953, 1048, 1128
PaeR7I	CTCGAG	1 cut(s)	801
PagI	TCATGA	1 cut(s)	551
PciI	ACATGT	2 cut(s)	949, 1124
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	24, 232, 375
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	317, 432, 708, 795, 1107
PscI	ACATGT	2 cut(s)	949, 1124
PsiI	TTATAA	1 cut(s)	251
Psp1406I	AACGTT	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	220
PspFI	CCCAGC	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	4 cut(s)	159, 199, 625, 1072
PspOMI	GGGCCC	1 cut(s)	623
PspPI	GGNCC	3 cut(s)	611, 623, 624
PstNI	CAGNNNCTG	1 cut(s)	378
RsaI	GTAC	2 cut(s)	644, 781
RsaNI	GTAC	2 cut(s)	643, 780
RseI	CAYNNNNRTG	3 cut(s)	954, 991, 1012
SaqAI	TTAA	4 cut(s)	439, 463, 497, 863
SatI	GCNGC	5 cut(s)	316, 431, 707, 794, 1106
Sau3AI	GATC	1 cut(s)	1089
Sau96I	GGNCC	3 cut(s)	611, 623, 624
ScrFI	CCNGG	2 cut(s)	202, 242
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	8 cut(s)	135, 153, 282, 529, 557, 725, 911, 1037
SfcI	CTRYAG	1 cut(s)	180
Sfr274I	CTCGAG	1 cut(s)	801
SlaI	CTCGAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	3 cut(s)	954, 991, 1012
SmlI	CTYRAG	2 cut(s)	28, 801
SmoI	CTYRAG	2 cut(s)	28, 801
Sse9I	AATT	3 cut(s)	168, 425, 1049
SsiI	CCGC	2 cut(s)	316, 936
SspI	AATATT	3 cut(s)	447, 532, 896
SspMI	CTAG	1 cut(s)	721
StyD4I	CCNGG	2 cut(s)	200, 240
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	5 cut(s)	10, 109, 324, 918, 1035
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	5 cut(s)	729, 802, 1060, 1088, 1176
TasI	AATT	3 cut(s)	168, 425, 1049
TatI	WGTACW	2 cut(s)	642, 779
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	24, 232, 375
Tru1I	TTAA	4 cut(s)	439, 463, 497, 863
Tru9I	TTAA	4 cut(s)	439, 463, 497, 863
TscAI	CASTG	3 cut(s)	411, 740, 923
TseFI	GTSAC	2 cut(s)	220, 558
TseI	GCWGC	4 cut(s)	430, 706, 793, 1105
Tsp45I	GTSAC	2 cut(s)	220, 558
TspDTI	ATGAA	5 cut(s)	292, 457, 596, 621, 1002
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	3 cut(s)	411, 740, 923
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	4 cut(s)	768, 953, 1048, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XhoI	CTCGAG	1 cut(s)	801
XspI	CTAG	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.