RLG00000009159

Homogentisate phytyltransferase 1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
47783091 .. 47789055
5965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009159

Sequence Viewer

Length: 1224 bp
ATGGATTCTGTGCTTCTTGGGTCCTTTCCAAAAGCTTCTTTAGGTGGGTACAGTTGGAGAAGGGAGAATCTCAAGAAGATTTGCTTTTCGGGTTCGTATACTGCAGTCGGAGTTTCAAGGTGCAGAGAATGGGACATCCTGCAAAGATACTGTGCTGTTGGGTCTCTGCATCCTCAACAGCATAAGCATCATAACACAGGCACCAAGGAAAATTCTACATCCTACAGGAGGCATAAAAAGTTCCTGGTGAATGCAACTGCTGGTCACCCCCTTGATTCTGAACCTGGAGCTTATAATGCGAAAAACGTTTGCAACACTCTGAAAAATGCAACAGATGCTTTTTACCGGTTTTCAAGGCCGCACACAGTTATAGGCACAGCATTGAGCATAATTTCGGTTTCTCTCCTTGCAGTCCAGAATCTGTCAGATTTTTCTCCCTTATTTTTCACTGGGGTGCTGGAGGCTGTAGTTGCTGCTCTCTTAATGAATATTTACATTGTCGGTTTAAATCAGTTGTCTGACATTGATATAGACAAGGTTAACAAGCCTTATCTTCCATTGGCATCAGGGGAATATTCAGTTGGGACTGGCATCATGATTGTCACTTCTTTTGTAATTATGAGTTTCTGGTTGGGATGGATTGTTGGTTCATGGCCATTGTTTTGGGCCCTTTTCATCAGTTTTGTACTTGGAACTGCTTATTCAATCAATATGCCACTTCTGAGATGGAAGAGGTCTGCTGTGGTTGCAGCAATGTGCATCCTAGCTGTTCGAGCAGTGATAGTTCAACTTGCTTTTTTCCTGCACATGCAGACCCATGTGTACAAAAGACCGGCTGCCTTCTCGAGGCCACTAATCTTTGCAACAGCATTTATGAGTTTCTTCTCTGTTGTTATAGCATTATTTAAGGATATACCTGATATTGATGGAGATAAAATATTTGGCATCCGGTCTTTTACAGTACGTCTGGGACAAAAGCGGGTATTCTGGACATGTATATGGCTACTTCAAATGGCTTATGGTGTGGCCATTTTAGTGGGAGCAACATCCTCATTCATGTTGAGCAAATGCATCACGGTTTTGGGCCATGCAATTTTGGCTTTGATGCTTTGGAGCCGAGCAAAATCTGTTGATCTCACCAGCAAAGCTGCAATAACCACCTTCTACATGTTTATATGGAAGCTCTTTTATGCTGAGTATCTACTTATCCCACTTGTTCGATGA

Protein Analysis

408

Amino Acids

45.56

Weight (kDa)

9.72

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UbiA PF01040 136 - 395 1.8e-39 UbiA prenyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 200
AccI GTMKAC 1 cut(s) 98
AciI CCGC 2 cut(s) 359, 979
AclI AACGTT 1 cut(s) 306
AcoI YGGCCR 2 cut(s) 653, 1026
AcsI RAATTY 1 cut(s) 211
AfaI GTAC 4 cut(s) 50, 687, 824, 963
AfiI CCNNNNNNNGG 2 cut(s) 228, 846
AflIII ACRYGT 2 cut(s) 992, 1167
AgeI ACCGGT 1 cut(s) 345
AgsI TTSAA 5 cut(s) 117, 354, 705, 788, 1010
AjnI CCWGG 2 cut(s) 243, 283
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AleI CACNNNNGTG 1 cut(s) 452
AloI GAACNNNNNNTCC 2 cut(s) 631, 663
AluBI AGCT 5 cut(s) 35, 290, 767, 1148, 1183
AluI AGCT 5 cut(s) 35, 290, 767, 1148, 1183
Alw26I GTCTC 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 844
AoxI GGCC 6 cut(s) 356, 653, 666, 848, 1026, 1084
ApaI GGGCCC 1 cut(s) 670
ApeKI GCWGC 4 cut(s) 473, 749, 836, 1148
ApoI RAATTY 1 cut(s) 211
AsiGI ACCGGT 1 cut(s) 345
AspS9I GGNCC 4 cut(s) 21, 666, 667, 1084
AsuHPI GGTGA 3 cut(s) 257, 259, 1129
AvaI CYCGRG 1 cut(s) 844
AvaII GGWCC 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 670
BalI TGGCCA 2 cut(s) 655, 1028
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 670
BbvI GCAGC 4 cut(s) 460, 761, 823, 1135
BccI CCATC 3 cut(s) 630, 720, 920
BciT130I CCWGG 2 cut(s) 245, 285
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 764
BfmI CTRYAG 3 cut(s) 102, 223, 465
BisI GCNGC 5 cut(s) 359, 474, 750, 837, 1149
BlsI GCNGC 5 cut(s) 360, 475, 751, 838, 1150
Bme1390I CCNGG 2 cut(s) 245, 285
Bme18I GGWCC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 844
BmgT120I GGNCC 4 cut(s) 21, 666, 667, 1084
BmiI GGNNCC 4 cut(s) 22, 202, 668, 1115
BmrFI CCNGG 2 cut(s) 245, 285
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 9 cut(s) 178, 196, 325, 572, 600, 768, 954, 1080, 1095
BmuI ACTGGG 1 cut(s) 459
BpmI CTGGAG 2 cut(s) 306, 479
BpuEI CTTGAG 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 1 cut(s) 204
BsaWI WCCGGW 2 cut(s) 345, 948
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 846
Bse118I RCCGGY 2 cut(s) 345, 832
Bse1I ACTGG 2 cut(s) 454, 592
Bse3DI GCAATG 1 cut(s) 759
BseBI CCWGG 2 cut(s) 245, 285
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 7 cut(s) 135, 169, 218, 641, 759, 945, 1046
BseLI CCNNNNNNNGG 2 cut(s) 228, 846
BseMI GCAATG 1 cut(s) 759
BseMII CTCAG 2 cut(s) 713, 1185
BseNI ACTGG 2 cut(s) 454, 592
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 4 cut(s) 460, 761, 823, 1135
BsgI GTGCAG 2 cut(s) 142, 788
BshFI GGCC 6 cut(s) 358, 655, 668, 850, 1028, 1086
BshNI GGYRCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 844
BsiSI CCGG 3 cut(s) 346, 833, 949
BslFI GGGAC 3 cut(s) 146, 598, 984
BslI CCNNNNNNNGG 2 cut(s) 228, 846
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 3 cut(s) 146, 598, 984
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 6 cut(s) 358, 655, 668, 850, 1028, 1086
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 844
Bsp120I GGGCCC 1 cut(s) 666
Bsp1286I GDGCHC 1 cut(s) 670
Bsp1407I TGTACA 1 cut(s) 822
Bsp143I GATC 1 cut(s) 1132
BspACI CCGC 2 cut(s) 359, 979
BspANI GGCC 6 cut(s) 358, 655, 668, 850, 1028, 1086
BspCNI CTCAG 2 cut(s) 714, 1186
BspHI TCATGA 1 cut(s) 594
BspLI GGNNCC 4 cut(s) 22, 202, 668, 1115
BspMAI CTGCAG 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 759
BsrFI RCCGGY 2 cut(s) 345, 832
BsrGI TGTACA 1 cut(s) 822
BsrI ACTGG 2 cut(s) 454, 592
BssAI RCCGGY 2 cut(s) 345, 832
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 1132
BssNAI GTATAC 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 204
Bst1107I GTATAC 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 245, 285
Bst4CI ACNGT 5 cut(s) 53, 152, 367, 961, 1078
Bst6I CTCTTC 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 822
BstDEI CTNAG 2 cut(s) 722, 1194
BstEII GGTNACC 1 cut(s) 263
BstENI CCTNNNNNAGG 2 cut(s) 226, 844
BstF5I GGATG 7 cut(s) 135, 169, 218, 641, 759, 945, 1046
BstKTI GATC 1 cut(s) 1135
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 1 cut(s) 1132
BstMWI GCNNNNNNNGC 6 cut(s) 296, 335, 470, 746, 773, 1097
BstNI CCWGG 2 cut(s) 245, 285
BstNSI RCATGY 3 cut(s) 811, 996, 1171
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 2 cut(s) 243, 283
BstSFI CTRYAG 3 cut(s) 102, 223, 465
BstSLI GKGCMC 1 cut(s) 670
BstV1I GCAGC 4 cut(s) 460, 761, 823, 1135
BstXI CCANNNNNNTGG 2 cut(s) 663, 1036
BstZ17I GTATAC 1 cut(s) 99
BsuRI GGCC 6 cut(s) 358, 655, 668, 850, 1028, 1086
BtsCI GGATG 7 cut(s) 135, 169, 218, 641, 759, 945, 1046
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 447, 783
CaiI CAGNNNCTG 1 cut(s) 421
CciI TCATGA 1 cut(s) 594
Cfr10I RCCGGY 2 cut(s) 345, 832
Cfr13I GGNCC 4 cut(s) 21, 666, 667, 1084
Csp6I GTAC 4 cut(s) 49, 686, 823, 962
CspAI ACCGGT 1 cut(s) 345
CviAII CATG 8 cut(s) 595, 651, 808, 818, 993, 1057, 1088, 1168
CviQI GTAC 4 cut(s) 49, 686, 823, 962
DdeI CTNAG 2 cut(s) 722, 1194
DpnI GATC 1 cut(s) 1134
DpnII GATC 1 cut(s) 1132
DraI TTTAAA 1 cut(s) 507
EaeI YGGCCR 2 cut(s) 653, 1026
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 844
Eco91I GGTNACC 1 cut(s) 263
EcoNI CCTNNNNNAGG 2 cut(s) 226, 844
EcoO109I RGGNCCY 2 cut(s) 21, 667
EcoO65I GGTNACC 1 cut(s) 263
EcoRII CCWGG 2 cut(s) 243, 283
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 1073
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 8 cut(s) 598, 654, 811, 821, 996, 1060, 1091, 1171
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 3 cut(s) 146, 598, 984
FatI CATG 8 cut(s) 594, 650, 807, 817, 992, 1056, 1087, 1167
FauI CCCGC 1 cut(s) 972
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 5 cut(s) 359, 474, 750, 837, 1149
FokI GGATG 7 cut(s) 122, 156, 205, 648, 746, 932, 1033
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 5 cut(s) 359, 474, 750, 837, 1149
FspBI CTAG 1 cut(s) 764
GluI GCNGC 5 cut(s) 359, 474, 750, 837, 1149
GsuI CTGGAG 2 cut(s) 306, 479
HaeIII GGCC 6 cut(s) 358, 655, 668, 850, 1028, 1086
HapII CCGG 3 cut(s) 346, 833, 949
Hin1II CATG 8 cut(s) 598, 654, 811, 821, 996, 1060, 1091, 1171
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 33
HinfI GANTC 4 cut(s) 5, 67, 275, 418
HpaI GTTAAC 1 cut(s) 541
HpaII CCGG 3 cut(s) 346, 833, 949
HphI GGTGA 3 cut(s) 257, 259, 1129
Hpy166II GTNNAC 3 cut(s) 99, 541, 823
Hpy188I TCNGA 6 cut(s) 110, 280, 321, 427, 520, 723
Hpy188III TCNNGA 5 cut(s) 73, 415, 595, 844, 988
Hpy8I GTNNAC 3 cut(s) 99, 541, 823
HpyAV CCTTC 3 cut(s) 54, 850, 1171
HpyCH4III ACNGT 5 cut(s) 53, 152, 367, 961, 1078
HpyCH4IV ACGT 2 cut(s) 306, 964
HpyF10VI GCNNNNNNNGC 6 cut(s) 296, 335, 470, 746, 773, 1097
HpyF3I CTNAG 2 cut(s) 722, 1194
HpySE526I ACGT 2 cut(s) 306, 964
Hsp92II CATG 8 cut(s) 598, 654, 811, 821, 996, 1060, 1091, 1171
KspAI GTTAAC 1 cut(s) 541
Kzo9I GATC 1 cut(s) 1132
LmnI GCTCC 3 cut(s) 287, 1040, 1113
Lsp1109I GCAGC 4 cut(s) 460, 761, 823, 1135
LweI GCATC 9 cut(s) 178, 196, 325, 572, 600, 768, 954, 1080, 1095
MaeI CTAG 1 cut(s) 764
MaeII ACGT 2 cut(s) 306, 964
MaeIII GTNAC 2 cut(s) 263, 601
MalI GATC 1 cut(s) 1134
MboI GATC 1 cut(s) 1132
MboII GAAGA 4 cut(s) 88, 545, 742, 874
MhlI GDGCHC 1 cut(s) 670
MlsI TGGCCA 2 cut(s) 655, 1028
MluCI AATT 4 cut(s) 211, 390, 615, 1092
MluNI TGGCCA 2 cut(s) 655, 1028
MmeI TCCRAC 2 cut(s) 35, 88
MnlI CCTC 6 cut(s) 183, 222, 454, 726, 840, 1060
Mox20I TGGCCA 2 cut(s) 655, 1028
Mph1103I ATGCAT 1 cut(s) 1073
MscI TGGCCA 2 cut(s) 655, 1028
MseI TTAA 4 cut(s) 482, 506, 540, 906
MslI CAYNNNNRTG 3 cut(s) 452, 997, 1034
Msp20I TGGCCA 2 cut(s) 655, 1028
MspI CCGG 3 cut(s) 346, 833, 949
MspR9I CCNGG 2 cut(s) 245, 285
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 2 cut(s) 245, 285
MwoI GCNNNNNNNGC 6 cut(s) 296, 335, 470, 746, 773, 1097
NdeII GATC 1 cut(s) 1132
NlaIII CATG 8 cut(s) 598, 654, 811, 821, 996, 1060, 1091, 1171
NlaIV GGNNCC 4 cut(s) 22, 202, 668, 1115
NmeAIII GCCGAG 1 cut(s) 1142
NmuCI GTSAC 2 cut(s) 263, 601
NsiI ATGCAT 1 cut(s) 1073
NspI RCATGY 3 cut(s) 811, 996, 1171
OliI CACNNNNGTG 1 cut(s) 452
PaeR7I CTCGAG 1 cut(s) 844
PagI TCATGA 1 cut(s) 594
PciI ACATGT 2 cut(s) 992, 1167
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 4 cut(s) 5, 67, 275, 418
PinAI ACCGGT 1 cut(s) 345
PkrI GCNGC 5 cut(s) 360, 475, 751, 838, 1150
PpuMI RGGWCCY 1 cut(s) 21
PscI ACATGT 2 cut(s) 992, 1167
PsiI TTATAA 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 243, 283
PspEI GGTNACC 1 cut(s) 263
PspGI CCWGG 2 cut(s) 243, 283
PspN4I GGNNCC 4 cut(s) 22, 202, 668, 1115
PspOMI GGGCCC 1 cut(s) 666
PspPI GGNCC 4 cut(s) 21, 666, 667, 1084
PspPPI RGGWCCY 1 cut(s) 21
PstI CTGCAG 1 cut(s) 106
PstNI CAGNNNCTG 1 cut(s) 421
RsaI GTAC 4 cut(s) 50, 687, 824, 963
RsaNI GTAC 4 cut(s) 49, 686, 823, 962
RseI CAYNNNNRTG 3 cut(s) 452, 997, 1034
SaqAI TTAA 4 cut(s) 482, 506, 540, 906
SatI GCNGC 5 cut(s) 359, 474, 750, 837, 1149
Sau3AI GATC 1 cut(s) 1132
Sau96I GGNCC 4 cut(s) 21, 666, 667, 1084
ScrFI CCNGG 2 cut(s) 245, 285
SduI GDGCHC 1 cut(s) 670
SfaNI GCATC 9 cut(s) 178, 196, 325, 572, 600, 768, 954, 1080, 1095
SfcI CTRYAG 3 cut(s) 102, 223, 465
Sfr274I CTCGAG 1 cut(s) 844
SinI GGWCC 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 844
SmiMI CAYNNNNRTG 3 cut(s) 452, 997, 1034
SmlI CTYRAG 2 cut(s) 71, 844
SmoI CTYRAG 2 cut(s) 71, 844
Sse9I AATT 4 cut(s) 211, 390, 615, 1092
SsiI CCGC 2 cut(s) 359, 979
SspI AATATT 3 cut(s) 490, 575, 939
SspMI CTAG 1 cut(s) 764
StyD4I CCNGG 2 cut(s) 243, 283
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 5 cut(s) 53, 152, 367, 961, 1078
TaiI ACGT 2 cut(s) 309, 967
TaqI TCGA 3 cut(s) 772, 845, 1219
TasI AATT 4 cut(s) 211, 390, 615, 1092
TatI WGTACW 2 cut(s) 685, 822
TauI GCSGC 1 cut(s) 361
TfiI GAWTC 4 cut(s) 5, 67, 275, 418
Tru1I TTAA 4 cut(s) 482, 506, 540, 906
Tru9I TTAA 4 cut(s) 482, 506, 540, 906
TscAI CASTG 2 cut(s) 454, 783
TseFI GTSAC 2 cut(s) 263, 601
TseI GCWGC 4 cut(s) 473, 749, 836, 1148
Tsp45I GTSAC 2 cut(s) 263, 601
TspDTI ATGAA 4 cut(s) 500, 639, 664, 1045
TspRI CASTG 2 cut(s) 454, 783
VpaK11BI GGWCC 1 cut(s) 21
XagI CCTNNNNNAGG 2 cut(s) 226, 844
XapI RAATTY 1 cut(s) 211
XceI RCATGY 3 cut(s) 811, 996, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 723
XhoI CTCGAG 1 cut(s) 844
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 1 cut(s) 764
Zsp2I ATGCAT 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.