Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006746

Physical Location & Seq

Genomic Coordinates Reverse (-)

26406845 .. 26417417

Gene Structure 10573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1248300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGATTATGCGCTTGTTGGGTCCTTCCCCAAAGCATCTTTAGGTAGTTGCGTTTGGAGAAGGGACAATCTCAACAAGAACTGCTTTTCAGGTTCATATGTAGCAGTCAGGGTTTCAAGATGCAAAGCATGGGACGTCCTAGAAAGATACTGTGGTGCTGGATCTCAGCAACATCTTTTGAAGCGTCATACCATAGGCACTAAAGAAAAGACTACATTCTACAGGAGGCATGATAAAAAGTTCTTGGTGAATGCTACTGCTGGCCACCCTCTTGAATCCGAACCTGATGCTTATAATCCAAAAAGCATATGGAACTCTATCAAAAATGGTGTAGATGCTTTTTACAGGTTTTCAAGGCCGCACACAGTCATAGGCACAGCATTGAGCATAATGTCAGTTTCTCTCCTTGCAGTCGAGAATCTGTCTGATTTCTCTCCATTGTTTTTCACAGGGGTGCTGGAGGCTGTAGTTGCTGCTCTGTTTATGAATATTTATATTGTTGGTTTGAATCAGTTGTCTGACATTGATATAGACAAGGTTAACAAGCCTTATCTTCCATTGGCATCGGGGGAATATTCAATTGGAATTGGCATCATGATTGTGACATCTTTCCTAATTATGAGCTTTTGGCTAGGATGGGTTGTTGGTTCATGGCCATTGTTTTGGGCCCTTTTCATCAGCTTTGTACTTGGAACTGCTTATTCAATCAATTTACCACTTTTGAGATGGAAGAAATCTGCTTTAGTTGCTGCAATGTGCATCCTAGCTGTTCGGGCGGTGATAGTCCAACTTGCTTTTTTCCTGCACATGCAGGTGCATGTGTACAAAAGACCAGCTGCCTTCTCTAGGCCCCTAATCTTCGCAACTGCATTTATGAGCTTCTTCTCAGTTGTTATAGCATTATTTAAGGACATACCTGATATTGATGGAGATAAAATATTCGGCATCCGATCTTTTACAGTACGCATGGGGCAAAAGCGGGTCTTTTGGATTTGTATTTCGCTACTTGAAATGGCTTATGGTGTTGCCGTTTTAGTGGGAGCATCATCTGGCTTCATGTTGAGCAAATGCATCACGGTTTTGGGACATGCAATTTTGGCTTCGGTACTGTGGAACAGAGCCAAATCTGTCGATCTCAACAGCAAAGCTGCAATCACAAGCTTTTACATGTTTATATGGAAGCTGTTCTATGCAGAGTATCTCCTTATACCGCTTGTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006766 GO:0006775 GO:0006810 GO:0008150 GO:0008152 GO:0008610 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009507 GO:0009536 GO:0009628 GO:0009915 GO:0009987 GO:0010176 GO:0010189 GO:0010232 GO:0010233 GO:0010354 GO:0015766 GO:0015770 GO:0015772 GO:0016043 GO:0016053 GO:0016740 GO:0016765 GO:0018130 GO:0019752 GO:0031347 GO:0032501 GO:0032787 GO:0033559 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046394 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0065007 GO:0071554 GO:0071555 GO:0071702 GO:0071704 GO:0071840 GO:0072330 GO:0080134 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

408

Amino Acids

45.63

Weight (kDa)

9.59

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	136 - 395	3.4e-36	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18950 AT2G18950
fragaria_vesca	FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870
malus_domestica	MD13G1248300.v1.1 MD16G1255400.v1.1
prunus_persica	Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1
pyrus_communis	pycom13g21940 pycom16g21660
rosa_chinensis	RchiOBHm_Chr4g0401151
rosa_laevigata	RLG00000009159
rosa_multiflora	Rmu_sc0003257.1_g000019 Rmu_sc0022364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345990
rosa_rugosa	Rorug04G0028200
rosa_samantha	Rh4BG100700 Rh4DG098000
rosa_wichuraiana	Rw4G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AarI	CACCTGC	1 cut(s)	802
AatII	GACGTC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	802
AciI	CCGC	4 cut(s)	359, 776, 979, 1211
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	2 cut(s)	262, 653
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	4 cut(s)	687, 824, 963, 1107
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	1167
AgsI	TTSAA	8 cut(s)	117, 181, 275, 354, 508, 579, 705, 1010
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	8 cut(s)	624, 681, 767, 836, 879, 1148, 1161, 1183
AluI	AGCT	8 cut(s)	624, 681, 767, 836, 879, 1148, 1161, 1183
AlwI	GGATC	1 cut(s)	169
AoxI	GGCC	5 cut(s)	262, 356, 653, 666, 848
ApaI	GGGCCC	1 cut(s)	670
ApeKI	GCWGC	4 cut(s)	473, 749, 836, 1148
Asp700I	GAANNNNTTC	1 cut(s)	1184
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	4 cut(s)	21, 666, 667, 849
AsuHPI	GGTGA	2 cut(s)	259, 790
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	670
BaeI	ACNNNNGTAYC	2 cut(s)	139, 172
BalI	TGGCCA	2 cut(s)	264, 655
BanII	GRGCYC	1 cut(s)	670
BbvI	GCAGC	4 cut(s)	460, 736, 823, 1135
BccI	CCATC	3 cut(s)	630, 720, 920
BceAI	ACGGC	1 cut(s)	1013
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BfaI	CTAG	4 cut(s)	140, 632, 764, 846
BfmI	CTRYAG	2 cut(s)	220, 465
BfuAI	ACCTGC	1 cut(s)	802
BisI	GCNGC	5 cut(s)	359, 474, 750, 837, 1149
BlsI	GCNGC	5 cut(s)	360, 475, 751, 838, 1150
Bme18I	GGWCC	1 cut(s)	21
BmgT120I	GGNCC	4 cut(s)	21, 666, 667, 849
BmiI	GGNNCC	3 cut(s)	22, 668, 851
BpmI	CTGGAG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse3DI	GCAATG	1 cut(s)	759
BseGI	GGATG	3 cut(s)	641, 759, 945
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	179, 900
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	4 cut(s)	460, 736, 823, 1135
BsgI	GTGCAG	1 cut(s)	788
BshFI	GGCC	5 cut(s)	264, 358, 655, 668, 850
BslFI	GGGAC	3 cut(s)	77, 146, 1098
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmFI	GGGAC	3 cut(s)	77, 146, 1098
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	5 cut(s)	264, 358, 655, 668, 850
Bsp120I	GGGCCC	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	3 cut(s)	161, 950, 1132
BspACI	CCGC	4 cut(s)	359, 776, 979, 1211
BspANI	GGCC	5 cut(s)	264, 358, 655, 668, 850
BspCNI	CTCAG	2 cut(s)	178, 899
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	22, 668, 851
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	759
BsrGI	TGTACA	1 cut(s)	822
BssMI	GATC	3 cut(s)	161, 950, 1132
BssNI	GRCGYC	1 cut(s)	135
Bst4CI	ACNGT	5 cut(s)	152, 367, 961, 1078, 1110
BstACI	GRCGYC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	822
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	165, 886
BstENI	CCTNNNNNAGG	1 cut(s)	844
BstF5I	GGATG	3 cut(s)	641, 759, 945
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	3 cut(s)	164, 953, 1135
BstMBI	GATC	3 cut(s)	161, 950, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 746, 773, 1097
BstNSI	RCATGY	4 cut(s)	811, 821, 1091, 1171
BstSFI	CTRYAG	2 cut(s)	220, 465
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	4 cut(s)	460, 736, 823, 1135
BstX2I	RGATCY	1 cut(s)	161
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	161
BsuRI	GGCC	5 cut(s)	264, 358, 655, 668, 850
BtsCI	GGATG	3 cut(s)	641, 759, 945
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	1 cut(s)	262
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	4 cut(s)	21, 666, 667, 849
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	4 cut(s)	686, 823, 962, 1106
CviQI	GTAC	4 cut(s)	686, 823, 962, 1106
DdeI	CTNAG	2 cut(s)	165, 886
DpnI	GATC	3 cut(s)	163, 952, 1134
DpnII	GATC	3 cut(s)	161, 950, 1132
EaeI	YGGCCR	2 cut(s)	262, 653
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	844
EcoO109I	RGGNCCY	3 cut(s)	21, 667, 849
EcoT22I	ATGCAT	1 cut(s)	1073
EcoT38I	GRGCYC	1 cut(s)	670
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 968, 1000
FaqI	GGGAC	3 cut(s)	77, 146, 1098
FauI	CCCGC	1 cut(s)	972
FauNDI	CATATG	2 cut(s)	97, 308
Fnu4HI	GCNGC	5 cut(s)	359, 474, 750, 837, 1149
FokI	GGATG	3 cut(s)	648, 746, 932
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	359, 474, 750, 837, 1149
FspBI	CTAG	4 cut(s)	140, 632, 764, 846
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	5 cut(s)	359, 474, 750, 837, 1149
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	5 cut(s)	264, 358, 655, 668, 850
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	1159
HinfI	GANTC	3 cut(s)	275, 418, 508
HpaI	GTTAAC	1 cut(s)	541
HphI	GGTGA	2 cut(s)	259, 790
Hpy166II	GTNNAC	2 cut(s)	541, 823
Hpy188I	TCNGA	4 cut(s)	280, 427, 520, 950
Hpy188III	TCNNGA	4 cut(s)	117, 272, 415, 595
Hpy8I	GTNNAC	2 cut(s)	541, 823
HpyAV	CCTTC	3 cut(s)	34, 54, 850
HpyCH4III	ACNGT	5 cut(s)	152, 367, 961, 1078, 1110
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 746, 773, 1097
HpyF3I	CTNAG	2 cut(s)	165, 886
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	135
HspAI	GCGC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	3 cut(s)	161, 950, 1132
LmnI	GCTCC	1 cut(s)	1040
Lsp1109I	GCAGC	4 cut(s)	460, 736, 823, 1135
MaeI	CTAG	4 cut(s)	140, 632, 764, 846
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	3 cut(s)	163, 952, 1134
MboI	GATC	3 cut(s)	161, 950, 1132
MboII	GAAGA	4 cut(s)	545, 742, 850, 874
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	2 cut(s)	264, 655
MluCI	AATT	5 cut(s)	579, 585, 615, 709, 1092
MluNI	TGGCCA	2 cut(s)	264, 655
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	3 cut(s)	219, 279, 454
Mox20I	TGGCCA	2 cut(s)	264, 655
Mph1103I	ATGCAT	1 cut(s)	1073
MroXI	GAANNNNTTC	1 cut(s)	1184
MscI	TGGCCA	2 cut(s)	264, 655
MseI	TTAA	2 cut(s)	540, 906
MslI	CAYNNNNRTG	3 cut(s)	452, 599, 812
Msp20I	TGGCCA	2 cut(s)	264, 655
MspA1I	CMGCKG	1 cut(s)	836
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	470, 746, 773, 1097
NdeI	CATATG	2 cut(s)	97, 308
NdeII	GATC	3 cut(s)	161, 950, 1132
NlaIV	GGNNCC	3 cut(s)	22, 668, 851
NmuCI	GTSAC	1 cut(s)	601
NsiI	ATGCAT	1 cut(s)	1073
NspI	RCATGY	4 cut(s)	811, 821, 1091, 1171
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	594
PaqCI	CACCTGC	1 cut(s)	802
PciI	ACATGT	1 cut(s)	1167
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	1184
PfeI	GAWTC	3 cut(s)	275, 418, 508
PkrI	GCNGC	5 cut(s)	360, 475, 751, 838, 1150
PpuMI	RGGWCCY	1 cut(s)	21
PscI	ACATGT	1 cut(s)	1167
PsiI	TTATAA	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	22, 668, 851
PspOMI	GGGCCC	1 cut(s)	666
PspPI	GGNCC	4 cut(s)	21, 666, 667, 849
PspPPI	RGGWCCY	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	161
PvuII	CAGCTG	1 cut(s)	836
RsaI	GTAC	4 cut(s)	687, 824, 963, 1107
RsaNI	GTAC	4 cut(s)	686, 823, 962, 1106
RseI	CAYNNNNRTG	3 cut(s)	452, 599, 812
SaqAI	TTAA	2 cut(s)	540, 906
SatI	GCNGC	5 cut(s)	359, 474, 750, 837, 1149
Sau3AI	GATC	3 cut(s)	161, 950, 1132
Sau96I	GGNCC	4 cut(s)	21, 666, 667, 849
SduI	GDGCHC	1 cut(s)	670
SfcI	CTRYAG	2 cut(s)	220, 465
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	3 cut(s)	452, 599, 812
Sse9I	AATT	5 cut(s)	579, 585, 615, 709, 1092
SsiI	CCGC	4 cut(s)	359, 776, 979, 1211
SspI	AATATT	3 cut(s)	490, 575, 939
SspMI	CTAG	4 cut(s)	140, 632, 764, 846
TaaI	ACNGT	5 cut(s)	152, 367, 961, 1078, 1110
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	414, 1131
TasI	AATT	5 cut(s)	579, 585, 615, 709, 1092
TatI	WGTACW	2 cut(s)	685, 822
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	3 cut(s)	275, 418, 508
Tru1I	TTAA	2 cut(s)	540, 906
Tru9I	TTAA	2 cut(s)	540, 906
TseFI	GTSAC	1 cut(s)	601
TseI	GCWGC	4 cut(s)	473, 749, 836, 1148
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	5 cut(s)	84, 500, 639, 664, 1045
VpaK11BI	GGWCC	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	844
XceI	RCATGY	4 cut(s)	811, 821, 1091, 1171
XcmI	CCANNNNNNNNNTGG	2 cut(s)	306, 723
XmnI	GAANNNNTTC	1 cut(s)	1184
XspI	CTAG	4 cut(s)	140, 632, 764, 846
ZraI	GACGTC	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.