Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006746

Physical Location & Seq

Genomic Coordinates Reverse (-)

14811403 .. 14817626

Gene Structure 6224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG098000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATTCTGTGCTTCTTGGGTCCTTTCCAAAAGCTTCTTTAGGTGGGAACAGTTGGAGAAGGGAGAATCTCAAGAAGATTTGCTTTTCGGGTTCGTATACTGCAGTCAGAGTTTCAAGGTGCAGAGAATGGGACATCCTGCAAAGATACTGTGCTGTTGGGTCTCTGCATCCTCAACAGCGTAAGCATCATAACACAGGCACCAAGGAAAATTCTACATCCTACAGGAGGCATAAAAAGTTCCTGGTGAATGCAACTGCTGGTCACCCCCTTGATTCTGAACCCGGAGCTTATAATGCGAAAAACGTTTGGAACACTTTGAAAAATGCAACGGATGCTTTTTACCGGTTTTCAAGGCCGCACACAGTTATAGGCACAGCATTGAGCATAGTTTCGGTTTCTCTCCTTGCAGTCCAGAATCTGTCAGATTTTTCTCCCTTATTTTTCACTGGGGTGCTGGAGGCTGTAGTTGCTGCTCTTTTAATGAATATTTACATTGTCGGTTTAAATCAGTTGTCTGACATTGATATAGACAAGGTTAACAAGCCTTATCTTCCATTGGCATCAGGGGAATATTCAGTTGGGACTGGCATCATGATTGTCACTTCTTTTGTTGTTATGAGTTTTTGGCTGGGATGGATTGTTGGTTCATGGCCATTGTTTTGGGCCCTTTTCATCAGTTTTGTACTGGGAACTGCTTATTCAATCAATGTGCCACTACTGAGATGGAAGAGGTCTGCTGTGGTTGCAGCAATGTGCATCCTAGCTGTTCGAGCAGTGATAGTTCAACTTGCTTTTTTCCTGCACATGCAGACCCATGTGTACAAAAGACCGGCTGCATTCTCGAGGCCACTAATCTTTGCGACAGCATTTATGAGTTTCTTCTCTGTTGTTATAGCATTATTTAAGGACATACCTGATATTGATGGAGATAAAATATTTGGCATCCGGTCTTTTACAGTGCGTCTGGGACAAAAGCGGGTATTTTGGACATGTATATGGCTACTTCAAATGGCTTATGGTGTGGCCATTTTAGTGGGAGCAACATCCACCTTCATGTTGAGCAAATGCATCACGGTAGGGCTTACAGTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004659 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006766 GO:0006775 GO:0006810 GO:0008150 GO:0008152 GO:0008610 GO:0008643 GO:0009058 GO:0009110 GO:0009266 GO:0009507 GO:0009536 GO:0009628 GO:0009915 GO:0009987 GO:0010176 GO:0010189 GO:0010232 GO:0010233 GO:0010354 GO:0015766 GO:0015770 GO:0015772 GO:0016043 GO:0016053 GO:0016740 GO:0016765 GO:0018130 GO:0019752 GO:0031347 GO:0032501 GO:0032787 GO:0033559 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0046394 GO:0046483 GO:0048583 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0065007 GO:0071554 GO:0071555 GO:0071702 GO:0071704 GO:0071840 GO:0072330 GO:0080134 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

UbiA

Protein Analysis

365

Amino Acids

40.69

Weight (kDa)

9.85

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UbiA	PF01040	134 - 353	1.1e-33	UbiA prenyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18950 AT2G18950
fragaria_vesca	FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870 FvH4_4g07870
malus_domestica	MD13G1248300.v1.1 MD16G1255400.v1.1
prunus_persica	Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1 Prupe.1G082500_v2.0.a1
pyrus_communis	pycom13g21940 pycom16g21660
rosa_chinensis	RchiOBHm_Chr4g0401151
rosa_laevigata	RLG00000009159
rosa_multiflora	Rmu_sc0003257.1_g000019 Rmu_sc0022364.1_g000001
rosa_roxburghii	Rroxscaffold_5G00345990
rosa_rugosa	Rorug04G0028200
rosa_samantha	Rh4BG100700 Rh4DG098000
rosa_wichuraiana	Rw4G008570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	2 cut(s)	359, 979
AclI	AACGTT	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	653, 1026
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	2 cut(s)	687, 824
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	992
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	6 cut(s)	117, 322, 354, 705, 788, 1010
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	452
AloI	GAACNNNNNNTCC	2 cut(s)	631, 663
AluBI	AGCT	3 cut(s)	35, 290, 767
AluI	AGCT	3 cut(s)	35, 290, 767
Alw26I	GTCTC	1 cut(s)	168
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	844
AoxI	GGCC	5 cut(s)	356, 653, 666, 848, 1026
ApaI	GGGCCC	1 cut(s)	670
ApeKI	GCWGC	3 cut(s)	473, 749, 836
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	21, 666, 667
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	257, 259
AvaI	CYCGRG	1 cut(s)	844
AvaII	GGWCC	1 cut(s)	21
BaeGI	GKGCMC	1 cut(s)	670
BalI	TGGCCA	2 cut(s)	655, 1028
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	460, 761, 823
BccI	CCATC	3 cut(s)	630, 720, 920
BciT130I	CCWGG	1 cut(s)	245
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	3 cut(s)	102, 223, 465
BisI	GCNGC	4 cut(s)	359, 474, 750, 837
BlsI	GCNGC	4 cut(s)	360, 475, 751, 838
Bme1390I	CCNGG	2 cut(s)	245, 285
Bme18I	GGWCC	1 cut(s)	21
BmeT110I	CYCGRG	1 cut(s)	844
BmgT120I	GGNCC	3 cut(s)	21, 666, 667
BmiI	GGNNCC	3 cut(s)	22, 202, 668
BmrFI	CCNGG	2 cut(s)	245, 285
BmrI	ACTGGG	2 cut(s)	459, 698
BmsI	GCATC	8 cut(s)	178, 196, 325, 572, 600, 768, 954, 1080
BmuI	ACTGGG	2 cut(s)	459, 698
BpmI	CTGGAG	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	345, 948
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	2 cut(s)	345, 832
Bse1I	ACTGG	3 cut(s)	454, 592, 693
Bse3DI	GCAATG	1 cut(s)	759
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	8 cut(s)	135, 169, 218, 340, 641, 759, 945, 1046
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	3 cut(s)	454, 592, 693
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	3 cut(s)	460, 761, 823
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	2 cut(s)	142, 788
BshFI	GGCC	5 cut(s)	358, 655, 668, 850, 1028
BshNI	GGYRCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	844
BsiSI	CCGG	4 cut(s)	285, 346, 833, 949
BslFI	GGGAC	3 cut(s)	146, 598, 984
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	3 cut(s)	146, 598, 984
BsmI	GAATGC	2 cut(s)	256, 839
BsnI	GGCC	5 cut(s)	358, 655, 668, 850, 1028
Bso31I	GGTCTC	1 cut(s)	168
BsoBI	CYCGRG	1 cut(s)	844
Bsp120I	GGGCCC	1 cut(s)	666
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	822
BspACI	CCGC	2 cut(s)	359, 979
BspANI	GGCC	5 cut(s)	358, 655, 668, 850, 1028
BspCNI	CTCAG	1 cut(s)	714
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	22, 202, 668
BspMAI	CTGCAG	1 cut(s)	106
BspT107I	GGYRCC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	759
BsrFI	RCCGGY	2 cut(s)	345, 832
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	3 cut(s)	454, 592, 693
BssAI	RCCGGY	2 cut(s)	345, 832
BssECI	CCNNGG	1 cut(s)	204
BssNAI	GTATAC	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	204
Bst1107I	GTATAC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	6 cut(s)	53, 152, 367, 961, 1078, 1090
Bst6I	CTCTTC	1 cut(s)	725
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	822
BstDEI	CTNAG	1 cut(s)	722
BstEII	GGTNACC	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	226
BstF5I	GGATG	8 cut(s)	135, 169, 218, 340, 641, 759, 945, 1046
BstMAI	GTCTC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	5 cut(s)	296, 335, 470, 746, 773
BstNI	CCWGG	1 cut(s)	245
BstNSI	RCATGY	2 cut(s)	811, 996
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	243, 283
BstSFI	CTRYAG	3 cut(s)	102, 223, 465
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	3 cut(s)	460, 761, 823
BstXI	CCANNNNNNTGG	2 cut(s)	663, 1036
BstZ17I	GTATAC	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	358, 655, 668, 850, 1028
BtsCI	GGATG	8 cut(s)	135, 169, 218, 340, 641, 759, 945, 1046
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	3 cut(s)	447, 783, 966
CaiI	CAGNNNCTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	594
Cfr10I	RCCGGY	2 cut(s)	345, 832
Cfr13I	GGNCC	3 cut(s)	21, 666, 667
CseI	GACGC	1 cut(s)	953
Csp6I	GTAC	2 cut(s)	686, 823
CspAI	ACCGGT	1 cut(s)	345
CviAII	CATG	6 cut(s)	595, 651, 808, 818, 993, 1057
CviQI	GTAC	2 cut(s)	686, 823
DdeI	CTNAG	1 cut(s)	722
DraI	TTTAAA	1 cut(s)	507
EaeI	YGGCCR	2 cut(s)	653, 1026
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	844
Eco91I	GGTNACC	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	226
EcoO109I	RGGNCCY	2 cut(s)	21, 667
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	1 cut(s)	204
EcoT22I	ATGCAT	1 cut(s)	1073
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	6 cut(s)	598, 654, 811, 821, 996, 1060
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	3 cut(s)	146, 598, 984
FatI	CATG	6 cut(s)	594, 650, 807, 817, 992, 1056
FauI	CCCGC	1 cut(s)	972
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	4 cut(s)	359, 474, 750, 837
FokI	GGATG	8 cut(s)	122, 156, 205, 347, 648, 746, 932, 1033
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	4 cut(s)	359, 474, 750, 837
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	4 cut(s)	359, 474, 750, 837
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	5 cut(s)	358, 655, 668, 850, 1028
HapII	CCGG	4 cut(s)	285, 346, 833, 949
HgaI	GACGC	1 cut(s)	953
Hin1II	CATG	6 cut(s)	598, 654, 811, 821, 996, 1060
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	33
HinfI	GANTC	4 cut(s)	5, 67, 275, 418
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	4 cut(s)	285, 346, 833, 949
HphI	GGTGA	2 cut(s)	257, 259
Hpy166II	GTNNAC	3 cut(s)	99, 541, 823
Hpy188I	TCNGA	4 cut(s)	110, 280, 427, 520
Hpy188III	TCNNGA	4 cut(s)	73, 415, 595, 844
Hpy8I	GTNNAC	3 cut(s)	99, 541, 823
HpyAV	CCTTC	2 cut(s)	54, 1063
HpyCH4III	ACNGT	6 cut(s)	53, 152, 367, 961, 1078, 1090
HpyCH4IV	ACGT	1 cut(s)	306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	296, 335, 470, 746, 773
HpyF3I	CTNAG	1 cut(s)	722
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	6 cut(s)	598, 654, 811, 821, 996, 1060
KspAI	GTTAAC	1 cut(s)	541
LmnI	GCTCC	2 cut(s)	287, 1040
Lsp1109I	GCAGC	3 cut(s)	460, 761, 823
LweI	GCATC	8 cut(s)	178, 196, 325, 572, 600, 768, 954, 1080
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	263, 601
MboII	GAAGA	4 cut(s)	88, 545, 742, 874
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	2 cut(s)	655, 1028
MluCI	AATT	1 cut(s)	211
MluNI	TGGCCA	2 cut(s)	655, 1028
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	5 cut(s)	183, 222, 454, 726, 840
Mox20I	TGGCCA	2 cut(s)	655, 1028
Mph1103I	ATGCAT	1 cut(s)	1073
MscI	TGGCCA	2 cut(s)	655, 1028
MseI	TTAA	4 cut(s)	482, 506, 540, 906
MslI	CAYNNNNRTG	4 cut(s)	452, 997, 1034, 1055
Msp20I	TGGCCA	2 cut(s)	655, 1028
MspI	CCGG	4 cut(s)	285, 346, 833, 949
MspR9I	CCNGG	2 cut(s)	245, 285
Mva1269I	GAATGC	2 cut(s)	256, 839
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	5 cut(s)	296, 335, 470, 746, 773
NciI	CCSGG	1 cut(s)	285
NlaIII	CATG	6 cut(s)	598, 654, 811, 821, 996, 1060
NlaIV	GGNNCC	3 cut(s)	22, 202, 668
NmuCI	GTSAC	2 cut(s)	263, 601
NsiI	ATGCAT	1 cut(s)	1073
NspI	RCATGY	2 cut(s)	811, 996
OliI	CACNNNNGTG	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	844
PagI	TCATGA	1 cut(s)	594
PciI	ACATGT	1 cut(s)	992
PctI	GAATGC	2 cut(s)	256, 839
PfeI	GAWTC	4 cut(s)	5, 67, 275, 418
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	360, 475, 751, 838
PpuMI	RGGWCCY	1 cut(s)	21
PscI	ACATGT	1 cut(s)	992
PsiI	TTATAA	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	3 cut(s)	22, 202, 668
PspOMI	GGGCCC	1 cut(s)	666
PspPI	GGNCC	3 cut(s)	21, 666, 667
PspPPI	RGGWCCY	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	421
RsaI	GTAC	2 cut(s)	687, 824
RsaNI	GTAC	2 cut(s)	686, 823
RseI	CAYNNNNRTG	4 cut(s)	452, 997, 1034, 1055
SaqAI	TTAA	4 cut(s)	482, 506, 540, 906
SatI	GCNGC	4 cut(s)	359, 474, 750, 837
Sau96I	GGNCC	3 cut(s)	21, 666, 667
ScrFI	CCNGG	2 cut(s)	245, 285
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	8 cut(s)	178, 196, 325, 572, 600, 768, 954, 1080
SfcI	CTRYAG	3 cut(s)	102, 223, 465
Sfr274I	CTCGAG	1 cut(s)	844
SinI	GGWCC	1 cut(s)	21
SlaI	CTCGAG	1 cut(s)	844
SmiMI	CAYNNNNRTG	4 cut(s)	452, 997, 1034, 1055
SmlI	CTYRAG	2 cut(s)	71, 844
SmoI	CTYRAG	2 cut(s)	71, 844
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	359, 979
SspI	AATATT	3 cut(s)	490, 575, 939
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	2 cut(s)	243, 283
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	6 cut(s)	53, 152, 367, 961, 1078, 1090
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	2 cut(s)	772, 845
TasI	AATT	1 cut(s)	211
TatI	WGTACW	2 cut(s)	685, 822
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	4 cut(s)	5, 67, 275, 418
Tru1I	TTAA	4 cut(s)	482, 506, 540, 906
Tru9I	TTAA	4 cut(s)	482, 506, 540, 906
TscAI	CASTG	3 cut(s)	454, 783, 966
TseFI	GTSAC	2 cut(s)	263, 601
TseI	GCWGC	3 cut(s)	473, 749, 836
Tsp45I	GTSAC	2 cut(s)	263, 601
TspDTI	ATGAA	4 cut(s)	500, 639, 664, 1045
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	3 cut(s)	454, 783, 966
VpaK11BI	GGWCC	1 cut(s)	21
XagI	CCTNNNNNAGG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	2 cut(s)	811, 996
XcmI	CCANNNNNNNNNTGG	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	844
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	764
Zsp2I	ATGCAT	1 cut(s)	1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.