AT2G18980

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014920
Physical Location & Seq
Reverse (-)
8233335 .. 8235440
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18980.1

Sequence Viewer

Length: 972 bp
ATGAAGAACCAAAGCAGCTTCTCCATTGTTGCTCTTCTTCTCATTTTCTTTTCCTCATCTGTCTTTGCTCAGCTGCAGACAAATTTTTACCGGAAGTCATGTCCTAACGTGGAAACTATTGTCCGCAATGCCGTCCGCCAAAAGTTCCAGCAGACTTTTGTTACGGCTCCGGCCACCCTCCGCCTTTTCTTCCATGATTGCTTCGTCCGTGGATGTGATGCTTCGATATTGCTGGCATCACCATCTGAGAAGGATCACCCTGATGACAAGTCACTAGCCGGAGACGGGTTTGATACGGTGGCAAAGGCAAAGCAGGCCCTTGATAGGGACCCCAACTGCCGTAACAAAGTCTCATGCGCTGACATTTTGGCTCTCGCCACTCGTGACGTCGTCGTTTTGACCGGAGGACCGAACTATCCGGTAGAGCTAGGGAGGAGAGACGGCAGACTATCGACAGTGGCTAGCGTTCAACACAGTCTACCCCAGCCTAGTTTCAAATTGGACCAACTTAACACTATGTTCGCTCGTCACGGTCTATCCCAAACCGATATGATTGCACTCTCAGGAGCACATACTATAGGATTCGCACATTGTGGCAAGTTTTCGAAAAGAATTTACAATTTTAGTCCTAAACGTCCAATTGATCCGACTTTGAATATTCGTTACGCCTTACAATTGAGACAAATGTGCCCCATTCGGGTCGACTTGAGGATCGCAATTAACATGGATCCTACTTCTCCAAATACATTTGACAATGCTTATTTCAAAAACCTCCAAAAAGGGATGGGTTTGTTCACGTCAGATCAAGTTTTGTTCTCTGATGAACGATCTAGATCAACTGTCAATTCATTTGCTTCTAGTGAAGCAACTTTTAGACAAGCTTTTATTTCGGCTATAACGAAGTTGGGTCGGGTTGGAGTTAAAACCGGTAACGCGGGTGAGATAAGACGGGATTGTTCACGTGTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

323

Amino Acids

35.83

Weight (kDa)

9.64

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 286 1.6e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18980 AT4G30170
fragaria_vesca FvH4_4g07750
malus_domestica MD13G1246700.v1.1
prunus_persica Prupe.1G081600_v2.0.a1
pyrus_communis pycom13g21780
rosa_chinensis RchiOBHm_Chr4g0400821
rosa_laevigata RLG00000009178
rosa_multiflora Rmu_sc0004591.1_g000015
rosa_roxburghii Rroxscaffold_5G00345640
rosa_rugosa Rorug04G0026100
rosa_samantha Rh4AG104000 Rh4BG099000 Rh4CG112200 Rh4DG095800
rosa_wichuraiana Rw4G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 390
AccI GTMKAC 2 cut(s) 478, 702
AccII CGCG 1 cut(s) 935
AciI CCGC 4 cut(s) 124, 136, 181, 935
AclWI GGATC 5 cut(s) 261, 638, 719, 722, 735
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 2 cut(s) 82, 612
AcvI CACGTG 1 cut(s) 962
AcyI GRCGYC 1 cut(s) 387
AdeI CACNNNGTG 1 cut(s) 593
AfiI CCNNNNNNNGG 4 cut(s) 285, 324, 325, 697
AflIII ACRYGT 1 cut(s) 961
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 4 cut(s) 470, 496, 655, 766
AjiI CACGTC 1 cut(s) 798
AluBI AGCT 4 cut(s) 18, 73, 427, 881
AluI AGCT 4 cut(s) 18, 73, 427, 881
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 4 cut(s) 276, 355, 432, 673
AlwI GGATC 5 cut(s) 261, 638, 719, 722, 735
AoxI GGCC 2 cut(s) 171, 315
ApeKI GCWGC 2 cut(s) 15, 73
ApoI RAATTY 2 cut(s) 82, 612
AsiGI ACCGGT 1 cut(s) 926
AspLEI GCGC 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 316, 328, 407, 502
AsuHPI GGTGA 3 cut(s) 231, 248, 950
AsuII TTCGAA 1 cut(s) 605
AsuNHI GCTAGC 1 cut(s) 461
AvaII GGWCC 3 cut(s) 328, 407, 502
BaeGI GKGCMC 1 cut(s) 692
BamHI GGATCC 1 cut(s) 727
BauI CACGAG 1 cut(s) 381
BbrPI CACGTG 1 cut(s) 962
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 27, 60
BccI CCATC 2 cut(s) 250, 778
BceAI ACGGC 4 cut(s) 116, 180, 324, 457
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BcoDI GTCTC 4 cut(s) 276, 355, 432, 673
BfaI CTAG 6 cut(s) 275, 428, 462, 489, 831, 858
BfmI CTRYAG 2 cut(s) 74, 576
BisI GCNGC 2 cut(s) 16, 74
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 2 cut(s) 17, 75
Bme18I GGWCC 3 cut(s) 328, 407, 502
BmgBI CACGTC 1 cut(s) 798
BmgT120I GGNCC 4 cut(s) 316, 328, 407, 502
BmiI GGNNCC 4 cut(s) 168, 329, 330, 729
BmsI GCATC 2 cut(s) 208, 245
BmtI GCTAGC 1 cut(s) 465
Bpu1102I GCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 605
BpuEI CTTGAG 1 cut(s) 727
BsaAI YACGTR 1 cut(s) 962
BsaBI GATNNNNATC 1 cut(s) 832
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 4 cut(s) 90, 401, 418, 926
Bsc4I CCNNNNNNNGG 4 cut(s) 285, 324, 325, 697
Bse118I RCCGGY 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 832
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 2 cut(s) 218, 789
BseJI GATNNNNATC 1 cut(s) 832
BseLI CCNNNNNNNGG 4 cut(s) 285, 324, 325, 697
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 3 cut(s) 83, 237, 576
BseRI GAGGAG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 692
BseXI GCAGC 2 cut(s) 27, 60
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 935
BshFI GGCC 2 cut(s) 173, 317
BshTI ACCGGT 1 cut(s) 926
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 6 cut(s) 91, 170, 279, 402, 419, 927
BslFI GGGAC 1 cut(s) 341
BslI CCNNNNNNNGG 4 cut(s) 285, 324, 325, 697
BsmAI GTCTC 4 cut(s) 276, 355, 432, 673
BsmBI CGTCTC 2 cut(s) 276, 432
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 2 cut(s) 173, 317
Bsp119I TTCGAA 1 cut(s) 605
Bsp1286I GDGCHC 2 cut(s) 571, 692
Bsp143I GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 4 cut(s) 124, 136, 181, 935
BspANI GGCC 2 cut(s) 173, 317
BspCNI CTCAG 3 cut(s) 82, 238, 575
BspFNI CGCG 1 cut(s) 935
BspLI GGNNCC 4 cut(s) 168, 329, 330, 729
BspMAI CTGCAG 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 465
BspPI GGATC 5 cut(s) 261, 638, 719, 722, 735
BspQI GCTCTTC 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 926
BssAI RCCGGY 1 cut(s) 926
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
BssNI GRCGYC 1 cut(s) 387
BssSI CACGAG 1 cut(s) 381
Bst2BI CACGAG 1 cut(s) 381
Bst4CI ACNGT 5 cut(s) 298, 457, 476, 533, 841
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 387
BstBAI YACGTR 1 cut(s) 962
BstBI TTCGAA 1 cut(s) 605
BstC8I GCNNGC 3 cut(s) 234, 315, 463
BstDEI CTNAG 3 cut(s) 69, 246, 562
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 218, 789
BstFNI CGCG 1 cut(s) 935
BstHHI GCGC 1 cut(s) 359
BstKTI GATC 7 cut(s) 256, 646, 714, 730, 805, 830, 836
BstMAI GTCTC 4 cut(s) 276, 355, 432, 673
BstMBI GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 74, 576
BstSLI GKGCMC 1 cut(s) 692
BstUI CGCG 1 cut(s) 935
BstV1I GCAGC 2 cut(s) 27, 60
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 2 cut(s) 173, 317
BtgI CCRYGG 1 cut(s) 208
BtrI CACGTC 1 cut(s) 798
BtsCI GGATG 2 cut(s) 218, 789
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 234, 315, 463
CfoI GCGC 1 cut(s) 359
Cfr10I RCCGGY 1 cut(s) 926
Cfr13I GGNCC 4 cut(s) 316, 328, 407, 502
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 4 cut(s) 99, 194, 354, 724
DdeI CTNAG 3 cut(s) 69, 246, 562
DpnI GATC 7 cut(s) 255, 645, 713, 729, 804, 829, 835
DpnII GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
DraIII CACNNNGTG 1 cut(s) 593
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
EciI GGCGGA 2 cut(s) 125, 170
Eco47I GGWCC 3 cut(s) 328, 407, 502
Eco72I CACGTG 1 cut(s) 962
EcoO109I RGGNCCY 2 cut(s) 316, 328
Esp3I CGTCTC 2 cut(s) 276, 432
FaeI CATG 4 cut(s) 102, 197, 357, 727
FaiI YATR 9 cut(s) 100, 195, 355, 518, 551, 573, 578, 725, 896
FaqI GGGAC 1 cut(s) 341
FatI CATG 4 cut(s) 98, 193, 353, 723
FauI CCCGC 1 cut(s) 928
FblI GTMKAC 2 cut(s) 478, 702
Fnu4HI GCNGC 2 cut(s) 16, 74
FokI GGATG 2 cut(s) 225, 796
Fsp4HI GCNGC 2 cut(s) 16, 74
FspBI CTAG 6 cut(s) 275, 428, 462, 489, 831, 858
GlaI GCGC 1 cut(s) 358
GluI GCNGC 2 cut(s) 16, 74
GsaI CCCAGC 1 cut(s) 487
HaeIII GGCC 2 cut(s) 173, 317
HapII CCGG 6 cut(s) 91, 170, 279, 402, 419, 927
HhaI GCGC 1 cut(s) 359
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 4 cut(s) 102, 197, 357, 727
Hin6I GCGC 1 cut(s) 357
HinP1I GCGC 1 cut(s) 357
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 879
HinfI GANTC 1 cut(s) 582
HpaII CCGG 6 cut(s) 91, 170, 279, 402, 419, 927
HphI GGTGA 3 cut(s) 231, 248, 950
Hpy166II GTNNAC 4 cut(s) 479, 703, 795, 959
Hpy188I TCNGA 4 cut(s) 247, 648, 802, 820
Hpy188III TCNNGA 3 cut(s) 383, 564, 831
Hpy8I GTNNAC 4 cut(s) 479, 703, 795, 959
Hpy99I CGWCG 2 cut(s) 392, 395
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 5 cut(s) 298, 457, 476, 533, 841
HpyCH4IV ACGT 5 cut(s) 108, 387, 634, 797, 961
HpyCH4V TGCA 2 cut(s) 76, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 3 cut(s) 69, 246, 562
HpySE526I ACGT 5 cut(s) 108, 387, 634, 797, 961
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 4 cut(s) 102, 197, 357, 727
HspAI GCGC 1 cut(s) 357
KflI GGGWCCC 1 cut(s) 328
Kzo9I GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 2 cut(s) 172, 566
Lsp1109I GCAGC 2 cut(s) 27, 60
LweI GCATC 2 cut(s) 208, 245
MaeI CTAG 6 cut(s) 275, 428, 462, 489, 831, 858
MaeII ACGT 5 cut(s) 108, 387, 634, 797, 961
MaeIII GTNAC 7 cut(s) 160, 270, 341, 383, 527, 662, 929
MalI GATC 7 cut(s) 255, 645, 713, 729, 804, 829, 835
MboI GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
MboII GAAGA 4 cut(s) 16, 26, 29, 181
MfeI CAATTG 2 cut(s) 639, 674
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 571, 692
MluCI AATT 9 cut(s) 82, 497, 612, 619, 639, 674, 717, 844, 967
MmeI TCCRAC 2 cut(s) 671, 895
MnlI CCTC 6 cut(s) 64, 188, 398, 426, 702, 782
MseI TTAA 4 cut(s) 510, 720, 921, 966
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 6 cut(s) 91, 170, 279, 402, 419, 927
MunI CAATTG 2 cut(s) 639, 674
MvnI CGCG 1 cut(s) 935
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
NheI GCTAGC 1 cut(s) 461
NlaIII CATG 4 cut(s) 102, 197, 357, 727
NlaIV GGNNCC 4 cut(s) 168, 329, 330, 729
NmuCI GTSAC 3 cut(s) 270, 383, 527
NspV TTCGAA 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 896
PfeI GAWTC 1 cut(s) 582
PflFI GACNNNGTC 1 cut(s) 389
PinAI ACCGGT 1 cut(s) 926
PkrI GCNGC 2 cut(s) 17, 75
PmaCI CACGTG 1 cut(s) 962
PmlI CACGTG 1 cut(s) 962
Ppu21I YACGTR 1 cut(s) 962
PpuMI RGGWCCY 1 cut(s) 328
Psp5II RGGWCCY 1 cut(s) 328
PspCI CACGTG 1 cut(s) 962
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 4 cut(s) 168, 329, 330, 729
PspPI GGNCC 4 cut(s) 316, 328, 407, 502
PspPPI RGGWCCY 1 cut(s) 328
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 727
PsyI GACNNNGTC 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 510, 720, 921, 966
SatI GCNGC 2 cut(s) 16, 74
Sau3AI GATC 7 cut(s) 253, 643, 711, 727, 802, 827, 833
Sau96I GGNCC 4 cut(s) 316, 328, 407, 502
SduI GDGCHC 2 cut(s) 571, 692
SfaNI GCATC 2 cut(s) 208, 245
SfcI CTRYAG 2 cut(s) 74, 576
SfuI TTCGAA 1 cut(s) 605
SinI GGWCC 3 cut(s) 328, 407, 502
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 706
SmoI CTYRAG 1 cut(s) 706
Sse9I AATT 9 cut(s) 82, 497, 612, 619, 639, 674, 717, 844, 967
SsiI CCGC 4 cut(s) 124, 136, 181, 935
SspI AATATT 1 cut(s) 658
SspMI CTAG 6 cut(s) 275, 428, 462, 489, 831, 858
TaaI ACNGT 5 cut(s) 298, 457, 476, 533, 841
TaiI ACGT 5 cut(s) 111, 390, 637, 800, 964
TaqI TCGA 4 cut(s) 224, 452, 605, 702
TaqII GACCGA 1 cut(s) 424
TasI AATT 9 cut(s) 82, 497, 612, 619, 639, 674, 717, 844, 967
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 4 cut(s) 510, 720, 921, 966
Tru9I TTAA 4 cut(s) 510, 720, 921, 966
TscAI CASTG 1 cut(s) 462
TseFI GTSAC 3 cut(s) 270, 383, 527
TseI GCWGC 2 cut(s) 15, 73
Tsp45I GTSAC 3 cut(s) 270, 383, 527
TspDTI ATGAA 3 cut(s) 17, 837, 837
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 462
Tth111I GACNNNGTC 1 cut(s) 389
VpaK11BI GGWCC 3 cut(s) 328, 407, 502
XapI RAATTY 2 cut(s) 82, 612
XbaI TCTAGA 1 cut(s) 830
XmiI GTMKAC 2 cut(s) 478, 702
XspI CTAG 6 cut(s) 275, 428, 462, 489, 831, 858
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.