AT4G30170

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014920
Physical Location & Seq
Forward (+)
14762819 .. 14764636
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30170.1

Sequence Viewer

Length: 978 bp
ATGGAGAAGAATACTTCTCAAACCATCTTCTCCAACTTTTTTCTTCTCCTTCTCCTTTCTTCATGTGTCTCTGCTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTGGAAACCATTGTACGTAACGCTGTCCGTCAGAAATTCCAGCAGACTTTCGTTACCGCTCCGGCCACTCTTCGCCTCTTCTTCCACGATTGCTTCGTTCGTGGATGTGATGCGTCAATAATGATAGCATCACCATCGGAGAGAGACCATCCAGATGACATGTCATTGGCCGGAGACGGATTCGACACGGTGGTGAAGGCGAAGCAAGCCGTTGATAGCAATCCCAATTGCCGCAACAAAGTCTCATGTGCTGACATTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCAAGCTACCCGGTGGAGCTAGGGAGGAGAGATGGCAGAATCTCCACGAAGGCCAGCGTTCAAAGCCAATTGCCTCAGCCCGAGTTTAACCTAAACCAGCTCAACGGCATGTTTAGCCGTCACGGCCTCTCTCAAACCGATATGATTGCCCTCTCAGGAGCACACACTATAGGATTTGCACATTGTGGAAAAATGTCAAAGAGAATATACAATTTTAGCCCTACAACACGTATCGACCCGAGTATAAACCGTGGATACGTGGTTCAGCTTAAGCAAATGTGCCCGATCGGTGTCGACGTAAGAATCGCAATCAACATGGATCCGACCAGTCCACGTACTTTCGATAATGCTTATTTCAAGAATCTCCAACAAGGAAAGGGTTTGTTCACGTCAGATCAAATCTTGTTCACAGATCAACGGTCAAGATCTACAGTTAATTCGTTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTCATCACAGCGATCACGAAGTTAGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAGGGATTGTTCACGTGTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

325

Amino Acids

35.83

Weight (kDa)

9.31

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 289 1.3e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18980 AT4G30170
fragaria_vesca FvH4_4g07750
malus_domestica MD13G1246700.v1.1
prunus_persica Prupe.1G081600_v2.0.a1
pyrus_communis pycom13g21780
rosa_chinensis RchiOBHm_Chr4g0400821
rosa_laevigata RLG00000009178
rosa_multiflora Rmu_sc0004591.1_g000015
rosa_roxburghii Rroxscaffold_5G00345640
rosa_rugosa Rorug04G0026100
rosa_samantha Rh4AG104000 Rh4BG099000 Rh4CG112200 Rh4DG095800
rosa_wichuraiana Rw4G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 81
AciI CCGC 2 cut(s) 171, 346
AclWI GGATC 2 cut(s) 728, 741
AcoI YGGCCR 2 cut(s) 177, 282
AcsI RAATTY 1 cut(s) 149
AcvI CACGTG 1 cut(s) 968
AdeI CACNNNGTG 1 cut(s) 599
AfaI GTAC 2 cut(s) 129, 751
AflII CTTAAG 1 cut(s) 683
AflIII ACRYGT 3 cut(s) 273, 641, 967
AgsI TTSAA 2 cut(s) 476, 772
AjiI CACGTC 1 cut(s) 804
AleI CACNNNNGTG 1 cut(s) 305
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 7 cut(s) 79, 420, 433, 514, 682, 875, 887
AluI AGCT 7 cut(s) 79, 420, 433, 514, 682, 875, 887
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 4 cut(s) 73, 252, 282, 361
AlwI GGATC 2 cut(s) 728, 741
Ama87I CYCGRG 2 cut(s) 494, 652
Aor13HI TCCGGA 1 cut(s) 81
AoxI GGCC 4 cut(s) 177, 282, 465, 538
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 425
AsuHPI GGTGA 3 cut(s) 237, 319, 956
AsuII TTCGAA 1 cut(s) 952
AvaI CYCGRG 2 cut(s) 494, 652
AvaII GGWCC 1 cut(s) 413
BaeGI GKGCMC 1 cut(s) 698
BamHI GGATCC 1 cut(s) 733
BauI CACGAG 1 cut(s) 387
BbrPI CACGTG 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 577
BbvCI CCTCAGC 1 cut(s) 489
BccI CCATC 4 cut(s) 32, 256, 270, 440
BceAI ACGGC 4 cut(s) 308, 516, 535, 553
BcgI CGANNNNNNTGC 4 cut(s) 231, 265, 542, 576
BciVI GTATCC 1 cut(s) 662
BcnI CCSGG 1 cut(s) 425
BcoDI GTCTC 4 cut(s) 73, 252, 282, 361
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 2 cut(s) 582, 843
BfrI CTTAAG 1 cut(s) 683
BfuI GTATCC 1 cut(s) 662
BglI GCCNNNNNGGC 1 cut(s) 537
BglII AGATCT 1 cut(s) 839
BisI GCNGC 1 cut(s) 346
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 425
Bme18I GGWCC 1 cut(s) 413
BmeT110I CYCGRG 2 cut(s) 494, 652
BmgBI CACGTC 1 cut(s) 804
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 214, 251
Bpu10I CCTNAGC 1 cut(s) 489
Bpu1102I GCTNAGC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 952
BpuMI CCSGG 1 cut(s) 425
BsaAI YACGTR 5 cut(s) 131, 644, 673, 749, 968
BsaBI GATNNNNATC 1 cut(s) 333
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 2 cut(s) 81, 407
Bse1I ACTGG 2 cut(s) 741, 937
Bse8I GATNNNNATC 1 cut(s) 333
BseAI TCCGGA 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 2 cut(s) 224, 262
BseJI GATNNNNATC 1 cut(s) 333
BseMII CTCAG 3 cut(s) 89, 503, 582
BseNI ACTGG 2 cut(s) 741, 937
BseRI GAGGAG 1 cut(s) 454
BseSI GKGCMC 1 cut(s) 698
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 4 cut(s) 179, 284, 467, 540
BsiEI CGRYCG 1 cut(s) 702
BsiHKAI GWGCWC 1 cut(s) 577
BsiHKCI CYCGRG 2 cut(s) 494, 652
BsiSI CCGG 5 cut(s) 82, 176, 285, 408, 425
BsmAI GTCTC 4 cut(s) 73, 252, 282, 361
BsmBI CGTCTC 1 cut(s) 282
BsnI GGCC 4 cut(s) 179, 284, 467, 540
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 2 cut(s) 494, 652
Bsp119I TTCGAA 1 cut(s) 952
Bsp1286I GDGCHC 2 cut(s) 577, 698
Bsp13I TCCGGA 1 cut(s) 81
Bsp143I GATC 6 cut(s) 699, 733, 808, 826, 839, 900
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 2 cut(s) 171, 346
BspANI GGCC 4 cut(s) 179, 284, 467, 540
BspCNI CTCAG 3 cut(s) 88, 502, 581
BspEI TCCGGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 2 cut(s) 728, 741
BspT104I TTCGAA 1 cut(s) 952
BspTI CTTAAG 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 741, 937
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 6 cut(s) 699, 733, 808, 826, 839, 900
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 4 cut(s) 304, 665, 834, 847
Bst6I CTCTTC 2 cut(s) 189, 197
BstAFI CTTAAG 1 cut(s) 683
BstBAI YACGTR 5 cut(s) 131, 644, 673, 749, 968
BstBI TTCGAA 1 cut(s) 952
BstC8I GCNNGC 2 cut(s) 321, 469
BstDEI CTNAG 3 cut(s) 75, 489, 568
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 224, 262
BstKTI GATC 6 cut(s) 702, 736, 811, 829, 842, 903
BstMAI GTCTC 4 cut(s) 73, 252, 282, 361
BstMBI GATC 6 cut(s) 699, 733, 808, 826, 839, 900
BstMCI CGRYCG 1 cut(s) 702
BstMWI GCNNNNNNNGC 4 cut(s) 320, 477, 528, 537
BstNSI RCATGY 2 cut(s) 277, 526
BstSCI CCNGG 1 cut(s) 423
BstSFI CTRYAG 2 cut(s) 582, 843
BstSLI GKGCMC 1 cut(s) 698
BstSNI TACGTA 1 cut(s) 131
BstX2I RGATCY 2 cut(s) 733, 839
BstYI RGATCY 2 cut(s) 733, 839
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 4 cut(s) 179, 284, 467, 540
BtgI CCRYGG 1 cut(s) 664
BtrI CACGTC 1 cut(s) 804
BtsCI GGATG 2 cut(s) 224, 262
Cac8I GCNNGC 2 cut(s) 321, 469
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 128, 750
CviAII CATG 6 cut(s) 63, 105, 274, 360, 523, 730
CviQI GTAC 2 cut(s) 128, 750
DdeI CTNAG 3 cut(s) 75, 489, 568
DpnI GATC 6 cut(s) 701, 735, 810, 828, 841, 902
DpnII GATC 6 cut(s) 699, 733, 808, 826, 839, 900
DraIII CACNNNGTG 1 cut(s) 599
EaeI YGGCCR 2 cut(s) 177, 282
Eam1104I CTCTTC 2 cut(s) 189, 197
EarI CTCTTC 2 cut(s) 189, 197
Eco105I TACGTA 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 413
Eco72I CACGTG 1 cut(s) 968
Eco88I CYCGRG 2 cut(s) 494, 652
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 6 cut(s) 66, 108, 277, 363, 526, 733
FatI CATG 6 cut(s) 62, 104, 273, 359, 522, 729
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 2 cut(s) 231, 249
Fsp4HI GCNGC 1 cut(s) 346
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 346
HaeIII GGCC 4 cut(s) 179, 284, 467, 540
HapII CCGG 5 cut(s) 82, 176, 285, 408, 425
HgaI GACGC 1 cut(s) 216
Hin1II CATG 6 cut(s) 66, 108, 277, 363, 526, 733
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 5 cut(s) 294, 453, 717, 775, 949
HpaII CCGG 5 cut(s) 82, 176, 285, 408, 425
HphI GGTGA 3 cut(s) 237, 319, 956
Hpy166II GTNNAC 5 cut(s) 709, 746, 801, 822, 965
Hpy188I TCNGA 5 cut(s) 111, 147, 253, 738, 808
Hpy188III TCNNGA 7 cut(s) 82, 266, 389, 570, 772, 837, 904
Hpy8I GTNNAC 5 cut(s) 709, 746, 801, 822, 965
Hpy99I CGWCG 2 cut(s) 401, 713
HpyAV CCTTC 5 cut(s) 59, 304, 457, 863, 948
HpyCH4III ACNGT 4 cut(s) 304, 665, 834, 847
HpyCH4IV ACGT 8 cut(s) 114, 130, 643, 672, 711, 748, 803, 967
HpyCH4V TGCA 1 cut(s) 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 320, 477, 528, 537
HpyF3I CTNAG 3 cut(s) 75, 489, 568
HpySE526I ACGT 8 cut(s) 114, 130, 643, 672, 711, 748, 803, 967
Hsp92II CATG 6 cut(s) 66, 108, 277, 363, 526, 733
Kpn2I TCCGGA 1 cut(s) 81
Kzo9I GATC 6 cut(s) 699, 733, 808, 826, 839, 900
LmnI GCTCC 5 cut(s) 84, 178, 430, 572, 872
LweI GCATC 2 cut(s) 214, 251
MaeI CTAG 1 cut(s) 434
MaeII ACGT 8 cut(s) 114, 130, 643, 672, 711, 748, 803, 967
MaeIII GTNAC 3 cut(s) 131, 166, 533
MalI GATC 6 cut(s) 701, 735, 810, 828, 841, 902
MbiI CCGCTC 1 cut(s) 173
MboI GATC 6 cut(s) 699, 733, 808, 826, 839, 900
MboII GAAGA 7 cut(s) 19, 19, 35, 51, 176, 184, 187
MfeI CAATTG 2 cut(s) 340, 482
MflI RGATCY 2 cut(s) 733, 839
MhlI GDGCHC 2 cut(s) 577, 698
MluCI AATT 6 cut(s) 149, 340, 482, 625, 850, 973
MmeI TCCRAC 3 cut(s) 57, 761, 805
MnlI CCTC 6 cut(s) 200, 404, 432, 498, 551, 575
MroI TCCGGA 1 cut(s) 81
MseI TTAA 3 cut(s) 501, 684, 849
MslI CAYNNNNRTG 2 cut(s) 267, 305
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 5 cut(s) 82, 176, 285, 408, 425
MspR9I CCNGG 1 cut(s) 425
MunI CAATTG 2 cut(s) 340, 482
MwoI GCNNNNNNNGC 4 cut(s) 320, 477, 528, 537
NciI CCSGG 1 cut(s) 425
NdeII GATC 6 cut(s) 699, 733, 808, 826, 839, 900
NlaIII CATG 6 cut(s) 66, 108, 277, 363, 526, 733
NlaIV GGNNCC 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 533
NspI RCATGY 2 cut(s) 277, 526
NspV TTCGAA 1 cut(s) 952
OliI CACNNNNGTG 1 cut(s) 305
PciI ACATGT 1 cut(s) 273
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 708
PfeI GAWTC 5 cut(s) 294, 453, 717, 775, 949
PkrI GCNGC 1 cut(s) 347
Ple19I CGATCG 1 cut(s) 702
PmaCI CACGTG 1 cut(s) 968
PmlI CACGTG 1 cut(s) 968
Ppu21I YACGTR 5 cut(s) 131, 644, 673, 749, 968
PscI ACATGT 1 cut(s) 273
PspCI CACGTG 1 cut(s) 968
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 1 cut(s) 413
PsuI RGATCY 2 cut(s) 733, 839
PvuI CGATCG 1 cut(s) 702
RsaI GTAC 2 cut(s) 129, 751
RsaNI GTAC 2 cut(s) 128, 750
RseI CAYNNNNRTG 2 cut(s) 267, 305
SalI GTCGAC 1 cut(s) 707
SaqAI TTAA 3 cut(s) 501, 684, 849
SatI GCNGC 1 cut(s) 346
Sau3AI GATC 6 cut(s) 699, 733, 808, 826, 839, 900
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 425
SduI GDGCHC 2 cut(s) 577, 698
SfaNI GCATC 2 cut(s) 214, 251
SfcI CTRYAG 2 cut(s) 582, 843
SfuI TTCGAA 1 cut(s) 952
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 2 cut(s) 267, 305
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SnaBI TACGTA 1 cut(s) 131
Sse9I AATT 6 cut(s) 149, 340, 482, 625, 850, 973
SsiI CCGC 2 cut(s) 171, 346
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 423
TaaI ACNGT 4 cut(s) 304, 665, 834, 847
TaiI ACGT 8 cut(s) 117, 133, 646, 675, 714, 751, 806, 970
TaqI TCGA 5 cut(s) 297, 648, 708, 756, 952
TasI AATT 6 cut(s) 149, 340, 482, 625, 850, 973
TauI GCSGC 1 cut(s) 348
TfiI GAWTC 5 cut(s) 294, 453, 717, 775, 949
Tru1I TTAA 3 cut(s) 501, 684, 849
Tru9I TTAA 3 cut(s) 501, 684, 849
TseFI GTSAC 1 cut(s) 533
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 2 cut(s) 51, 880
TspGWI ACGGA 2 cut(s) 131, 306
Vha464I CTTAAG 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 149
XceI RCATGY 2 cut(s) 277, 526
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.