Rh4AG104000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014920
Physical Location & Seq
Forward (+)
22165800 .. 22167881
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG104000.1

Sequence Viewer

Length: 981 bp
ATGGAAGCTCGTAGTTTCATTGTTCTTTCAGTCTTTCTCCTACCTTTGCTCTTTGGAACAGTTTCTGCTCAGCTTAGGACGGACTTCTATAAAGGCACATGTCCCAATGTTGAGTCCTTAGTCAGCTCAGCCGTCTCGACCAAGTTCCAGCAGACTTTTGTTACTGTTCCAGCCACTCTTCGACTCTTCTTCCACGATTGCTTTGTTCGGGGTTGTGATGCTTCAGTGTTGATTCAGTCACCAACTAATAATGCTGAGAAGGATCACCCGGACAACCTTTCCCTCGCCGGAGATGGATTTGACACCGTGATCAAAGCCAAGGCTGCAGTTGATAAAGATCCTAACTGCAGAAACAAAGTTTCATGTGCAGATATACTAGCTCTGGCAACTAGAGATGTTGTGAAATTGGCCGGGGGACCATCGTATTCCGTTGAATTGGGTAGGCGAGATGGAAGAGTATCGACTGTTGCAAGTGTTCAGAGGCAGCTTCCTCCCCCTTCTTTCAATCTAGACCAGCTTAACACCATCTTTAACGCTCATGGTCTCACCCAGACTGACATGATTGCATTATCAGGTGCGCACACACTTGGTTTCTCTCATTGCAACCGCTTCTCCAAACGAATCTACAACTTTAGCCCCGCAAAGAGAATCGACCCAACACTCAATTCAGGGTATGCATTGCAGCTTAGACAGATGTGCCCCCTTAAAGTGGATCCGAGAATTGCCATTAACATGGACCCAACTACACCTCAGAAGTTTGACAATGCTTACTTCCAGAACCTACAGCAAGGAAAGGGTCTATTCACCTCTGACCAGATACTATTTACGGATTCAAGATCAAAGCCTACTGTCAACACATTTGCATCAAGTAATGCTGCTTTTAACCAGGCTTTTGTGCAGGCCATAACCAAGTTAGGCAGAGTTGGGGTTCTAACTGGAACTCGAGGGGAGATTCGGAGCGATTGCACCCGTCCCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

326

Amino Acids

35.65

Weight (kDa)

9.23

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 289 8.1e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18980 AT4G30170
fragaria_vesca FvH4_4g07750
malus_domestica MD13G1246700.v1.1
prunus_persica Prupe.1G081600_v2.0.a1
pyrus_communis pycom13g21780
rosa_chinensis RchiOBHm_Chr4g0400821
rosa_laevigata RLG00000009178
rosa_multiflora Rmu_sc0004591.1_g000015
rosa_roxburghii Rroxscaffold_5G00345640
rosa_rugosa Rorug04G0026100
rosa_samantha Rh4AG104000 Rh4BG099000 Rh4CG112200 Rh4DG095800
rosa_wichuraiana Rw4G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 579
AciI CCGC 2 cut(s) 607, 639
AclWI GGATC 4 cut(s) 270, 332, 707, 720
AcoI YGGCCR 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 709
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 3 cut(s) 434, 505, 834
AjnI CCWGG 1 cut(s) 885
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AluBI AGCT 7 cut(s) 8, 73, 126, 380, 487, 517, 685
AluI AGCT 7 cut(s) 8, 73, 126, 380, 487, 517, 685
Alw26I GTCTC 2 cut(s) 139, 548
AlwI GGATC 4 cut(s) 270, 332, 707, 720
AlwNI CAGNNNCTG 1 cut(s) 65
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 2 cut(s) 408, 900
ApeKI GCWGC 4 cut(s) 323, 484, 682, 875
Asp700I GAANNNNTTC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 416, 736
AsuC2I CCSGG 2 cut(s) 269, 412
AsuHPI GGTGA 4 cut(s) 231, 257, 538, 796
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 2 cut(s) 416, 736
BaeGI GKGCMC 1 cut(s) 701
BamHI GGATCC 1 cut(s) 712
BbvI GCAGC 4 cut(s) 310, 496, 694, 862
BccI CCATC 4 cut(s) 287, 427, 443, 533
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 887
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 269, 412
BcoDI GTCTC 2 cut(s) 139, 548
BfaI CTAG 4 cut(s) 377, 390, 509, 979
BfmI CTRYAG 3 cut(s) 324, 346, 782
BisI GCNGC 4 cut(s) 324, 485, 683, 876
BlpI GCTNAGC 2 cut(s) 69, 127
BlsI GCNGC 4 cut(s) 325, 486, 684, 877
Bme1390I CCNGG 3 cut(s) 269, 412, 887
Bme18I GGWCC 2 cut(s) 416, 736
BmeT110I CYCGRG 1 cut(s) 942
BmgT120I GGNCC 2 cut(s) 416, 736
BmiI GGNNCC 3 cut(s) 417, 714, 738
BmrFI CCNGG 3 cut(s) 269, 412, 887
BmsI GCATC 2 cut(s) 208, 872
Bpu10I CCTNAGC 1 cut(s) 74
Bpu1102I GCTNAGC 2 cut(s) 69, 127
BpuMI CCSGG 2 cut(s) 269, 412
BsaBI GATNNNNATC 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 318, 411
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 940
Bse3DI GCAATG 2 cut(s) 598, 677
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 318, 411
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 2 cut(s) 598, 677
BseMII CTCAG 4 cut(s) 83, 141, 246, 764
BseNI ACTGG 1 cut(s) 940
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 4 cut(s) 310, 496, 694, 862
BsgI GTGCAG 2 cut(s) 387, 917
BshFI GGCC 2 cut(s) 410, 902
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 3 cut(s) 269, 288, 411
BslFI GGGAC 3 cut(s) 87, 429, 957
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 2 cut(s) 139, 548
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 3 cut(s) 87, 429, 957
BsnI GGCC 2 cut(s) 410, 902
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 942
Bsp1286I GDGCHC 1 cut(s) 701
Bsp143I GATC 5 cut(s) 262, 309, 337, 712, 836
Bsp1720I GCTNAGC 2 cut(s) 69, 127
BspACI CCGC 2 cut(s) 607, 639
BspANI GGCC 2 cut(s) 410, 902
BspCNI CTCAG 4 cut(s) 82, 140, 247, 763
BspLI GGNNCC 3 cut(s) 417, 714, 738
BspMAI CTGCAG 2 cut(s) 328, 350
BspPI GGATC 4 cut(s) 270, 332, 707, 720
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 598, 677
BsrI ACTGG 1 cut(s) 940
BssECI CCNNGG 2 cut(s) 318, 411
BssMI GATC 5 cut(s) 262, 309, 337, 712, 836
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 5 cut(s) 61, 166, 307, 466, 850
Bst6I CTCTTC 3 cut(s) 183, 191, 448
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 7 cut(s) 69, 74, 118, 127, 255, 686, 750
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 5 cut(s) 265, 312, 340, 715, 839
BstMAI GTCTC 2 cut(s) 139, 548
BstMBI GATC 5 cut(s) 262, 309, 337, 712, 836
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 887
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 3 cut(s) 267, 410, 885
BstSFI CTRYAG 3 cut(s) 324, 346, 782
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 310, 496, 694, 862
BstX2I RGATCY 2 cut(s) 337, 712
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 2 cut(s) 337, 712
BsuRI GGCC 2 cut(s) 410, 902
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 900
CaiI CAGNNNCTG 1 cut(s) 65
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 2 cut(s) 416, 736
CviAII CATG 5 cut(s) 99, 363, 539, 559, 733
DdeI CTNAG 7 cut(s) 69, 74, 118, 127, 255, 686, 750
DpnI GATC 5 cut(s) 264, 311, 339, 714, 838
DpnII GATC 5 cut(s) 262, 309, 337, 712, 836
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 183, 191, 448
EarI CTCTTC 3 cut(s) 183, 191, 448
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 416, 736
Eco57I CTGAAG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 942
EcoRII CCWGG 1 cut(s) 885
EcoT14I CCWWGG 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 679
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 5 cut(s) 102, 366, 542, 562, 736
FaiI YATR 9 cut(s) 90, 100, 364, 374, 540, 560, 675, 734, 905
FaqI GGGAC 3 cut(s) 87, 429, 957
FatI CATG 5 cut(s) 98, 362, 538, 558, 732
FauI CCCGC 1 cut(s) 646
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 324, 485, 683, 876
Fsp4HI GCNGC 4 cut(s) 324, 485, 683, 876
FspAI RTGCGCAY 1 cut(s) 579
FspBI CTAG 4 cut(s) 377, 390, 509, 979
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 1 cut(s) 579
GluI GCNGC 4 cut(s) 324, 485, 683, 876
HaeIII GGCC 2 cut(s) 410, 902
HapII CCGG 3 cut(s) 269, 288, 411
HhaI GCGC 1 cut(s) 580
Hin1II CATG 5 cut(s) 102, 366, 542, 562, 736
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 7 cut(s) 113, 183, 232, 621, 648, 830, 952
HpaII CCGG 3 cut(s) 269, 288, 411
HphI GGTGA 4 cut(s) 231, 257, 538, 796
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 5 cut(s) 480, 717, 753, 811, 957
Hpy188III TCNNGA 4 cut(s) 136, 509, 775, 834
Hpy8I GTNNAC 1 cut(s) 853
HpyAV CCTTC 2 cut(s) 253, 507
HpyCH4III ACNGT 5 cut(s) 61, 166, 307, 466, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 7 cut(s) 69, 74, 118, 127, 255, 686, 750
Hsp92II CATG 5 cut(s) 102, 366, 542, 562, 736
HspAI GCGC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 5 cut(s) 262, 309, 337, 712, 836
LmnI GCTCC 1 cut(s) 957
Lsp1109I GCAGC 4 cut(s) 310, 496, 694, 862
LweI GCATC 2 cut(s) 208, 872
MaeI CTAG 4 cut(s) 377, 390, 509, 979
MaeIII GTNAC 2 cut(s) 160, 237
MalI GATC 5 cut(s) 264, 311, 339, 714, 838
MboI GATC 5 cut(s) 262, 309, 337, 712, 836
MboII GAAGA 4 cut(s) 170, 178, 181, 465
MflI RGATCY 2 cut(s) 337, 712
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 4 cut(s) 404, 434, 664, 720
MlyI GAGTC 2 cut(s) 122, 177
MnlI CCTC 6 cut(s) 293, 474, 501, 759, 817, 938
Mph1103I ATGCAT 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 61
MseI TTAA 5 cut(s) 519, 531, 705, 729, 882
MslI CAYNNNNRTG 1 cut(s) 731
MspI CCGG 3 cut(s) 269, 288, 411
MspR9I CCNGG 3 cut(s) 269, 412, 887
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 2 cut(s) 269, 412
NdeII GATC 5 cut(s) 262, 309, 337, 712, 836
NlaIII CATG 5 cut(s) 102, 366, 542, 562, 736
NlaIV GGNNCC 3 cut(s) 417, 714, 738
NmuCI GTSAC 1 cut(s) 237
NsbI TGCGCA 1 cut(s) 579
NsiI ATGCAT 1 cut(s) 679
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 942
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 61
PfeI GAWTC 5 cut(s) 232, 621, 648, 830, 952
PkrI GCNGC 4 cut(s) 325, 486, 684, 877
PleI GAGTC 2 cut(s) 121, 177
PpsI GAGTC 2 cut(s) 121, 177
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 3 cut(s) 417, 714, 738
PspPI GGNCC 2 cut(s) 416, 736
PspXI VCTCGAGB 1 cut(s) 942
PstI CTGCAG 2 cut(s) 328, 350
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 2 cut(s) 337, 712
RseI CAYNNNNRTG 1 cut(s) 731
SaqAI TTAA 5 cut(s) 519, 531, 705, 729, 882
SatI GCNGC 4 cut(s) 324, 485, 683, 876
Sau3AI GATC 5 cut(s) 262, 309, 337, 712, 836
Sau96I GGNCC 2 cut(s) 416, 736
SchI GAGTC 2 cut(s) 122, 177
ScrFI CCNGG 3 cut(s) 269, 412, 887
SduI GDGCHC 1 cut(s) 701
SfaNI GCATC 2 cut(s) 208, 872
SfcI CTRYAG 3 cut(s) 324, 346, 782
Sfr274I CTCGAG 1 cut(s) 942
SinI GGWCC 2 cut(s) 416, 736
SlaI CTCGAG 1 cut(s) 942
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
Sse9I AATT 4 cut(s) 404, 434, 664, 720
SsiI CCGC 2 cut(s) 607, 639
SspMI CTAG 4 cut(s) 377, 390, 509, 979
StyD4I CCNGG 3 cut(s) 267, 410, 885
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 5 cut(s) 61, 166, 307, 466, 850
TaqI TCGA 5 cut(s) 137, 181, 461, 651, 943
TasI AATT 4 cut(s) 404, 434, 664, 720
TfiI GAWTC 5 cut(s) 232, 621, 648, 830, 952
Tru1I TTAA 5 cut(s) 519, 531, 705, 729, 882
Tru9I TTAA 5 cut(s) 519, 531, 705, 729, 882
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 237
TseI GCWGC 4 cut(s) 323, 484, 682, 875
Tsp45I GTSAC 1 cut(s) 237
TspDTI ATGAA 2 cut(s) 7, 351
TspGWI ACGGA 3 cut(s) 95, 418, 842
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 2 cut(s) 416, 736
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 1 cut(s) 942
XmnI GAANNNNTTC 1 cut(s) 61
XspI CTAG 4 cut(s) 377, 390, 509, 979
Zsp2I ATGCAT 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.