FvH4_4g07750

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014920
Physical Location & Seq
Forward (+)
7229566 .. 7232277
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07750.t1

Sequence Viewer

Length: 981 bp
ATGGAAGCTCGTAGTTTCATTGTTCTTTCAGTCTTTCTCCTACCTCTGCTCTTTGGAACTGTTTCTGCTCAGCTTAGGACAGACTTCTATAAAGGCACATGTCCCAATGTTGAGTCCTTAGTCAGCTCAGCCGTGTCGAAAAAGTTCCAGCAGACTTTTGTGACTGTTCCAGCCACTCTTCGACTCTTCTTCCACGATTGCGTGGTTCGGGGTTGTGATGCTTCAGTGTTGATTCAGTCGCCAACTAACAAGGCTGAGAAGGATCACCCGGATAACCTTTCCCTTGCCGGAGATGGATTTGACACCGTGATCAAAGCCAAGGCTGCTGTCGATAATGATCCTAACTGCAGAAACAAAGTTTCATGTGCAGATATACTTGCTCTGGCAACTAGAGATGTTGTGAGATTGGCCGGGGGACCATCGTATTCCGTTGAACTGGGTAGGCGCGATGGAAGAGTATCGAGTATTGCAAGTGTTCAGAGGCGTCTTCCTCAACCTACTTTCAATCTAGACCAGCTTAACACCATGTTTAGCACTCATGGTCTCTCCCAGACTGACATGATTGCATTATCAGGTGCACACACACTTGGGTTCTCTCATTGCAACCGCTTTTCCAACCGAATCTACAACTTTAGCCCCAGAACTCGTATCGACCCAACACTTAACTCAGGGTATGCAATGCAGCTCAGACAGATGTGTCCTGTTAAAGTGGATCCAAGAATTGCCATTAACATGGACCCAACCACACCTCAGAAATTTGACAATGCTTACTTCCAGAATCTTCAGCAAGGAAAGGGTCTATTCACCTCTGACCAGATACTATTTACGGATTCAAGATCAAGGTCTACTGTCAACACATTTGCATCAAGTAATGCTGCTTTTAATCAGGCTTTTGTGCAGGCCATGACCAAGTTAGGCAGAGTTGGGGTTCTAACTGGAACTCAAGGGGAAATTCGGCGCGATTGCACCCGTCCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

35.86

Weight (kDa)

9.38

Isoelectric Point (pI)

39.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 289 7.3e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18980 AT4G30170
fragaria_vesca FvH4_4g07750
malus_domestica MD13G1246700.v1.1
prunus_persica Prupe.1G081600_v2.0.a1
pyrus_communis pycom13g21780
rosa_chinensis RchiOBHm_Chr4g0400821
rosa_laevigata RLG00000009178
rosa_multiflora Rmu_sc0004591.1_g000015
rosa_roxburghii Rroxscaffold_5G00345640
rosa_rugosa Rorug04G0026100
rosa_samantha Rh4AG104000 Rh4BG099000 Rh4CG112200 Rh4DG095800
rosa_wichuraiana Rw4G008410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 845
AccII CGCG 2 cut(s) 447, 960
AciI CCGC 1 cut(s) 607
AclWI GGATC 4 cut(s) 270, 332, 707, 720
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 755, 951
AcuI CTGAAG 2 cut(s) 207, 767
AcyI GRCGYC 1 cut(s) 484
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 3 cut(s) 434, 505, 834
AluBI AGCT 5 cut(s) 8, 73, 126, 517, 685
AluI AGCT 5 cut(s) 8, 73, 126, 517, 685
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 1 cut(s) 548
Alw44I GTGCAC 1 cut(s) 576
AlwI GGATC 4 cut(s) 270, 332, 707, 720
AoxI GGCC 2 cut(s) 408, 900
ApaLI GTGCAC 1 cut(s) 576
ApeKI GCWGC 3 cut(s) 323, 682, 875
ApoI RAATTY 2 cut(s) 755, 951
Asp700I GAANNNNTTC 2 cut(s) 61, 143
AspLEI GCGC 2 cut(s) 447, 960
AspS9I GGNCC 2 cut(s) 416, 736
AsuC2I CCSGG 2 cut(s) 269, 412
AsuHPI GGTGA 2 cut(s) 257, 796
AvaII GGWCC 2 cut(s) 416, 736
BaeGI GKGCMC 1 cut(s) 580
BamHI GGATCC 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 3 cut(s) 310, 694, 862
BccI CCATC 3 cut(s) 287, 427, 443
BceAI ACGGC 1 cut(s) 116
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 269, 412
BcoDI GTCTC 1 cut(s) 548
BfaI CTAG 2 cut(s) 390, 509
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 3 cut(s) 324, 683, 876
BlpI GCTNAGC 2 cut(s) 69, 127
BlsI GCNGC 3 cut(s) 325, 684, 877
Bme1390I CCNGG 2 cut(s) 269, 412
Bme18I GGWCC 2 cut(s) 416, 736
BmgT120I GGNCC 2 cut(s) 416, 736
BmiI GGNNCC 3 cut(s) 417, 714, 738
BmrFI CCNGG 2 cut(s) 269, 412
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 208, 872
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 74
Bpu1102I GCTNAGC 2 cut(s) 69, 127
BpuEI CTTGAG 1 cut(s) 927
BpuMI CCSGG 2 cut(s) 269, 412
BsaBI GATNNNNATC 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 484
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 2 cut(s) 318, 411
Bse1I ACTGG 2 cut(s) 441, 940
Bse3DI GCAATG 2 cut(s) 598, 684
Bse8I GATNNNNATC 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 318, 411
BseJI GATNNNNATC 1 cut(s) 336
BseMI GCAATG 2 cut(s) 598, 684
BseMII CTCAG 6 cut(s) 83, 141, 246, 681, 700, 764
BseNI ACTGG 2 cut(s) 441, 940
BseSI GKGCMC 1 cut(s) 580
BseXI GCAGC 3 cut(s) 310, 694, 862
BsgI GTGCAG 2 cut(s) 387, 917
Bsh1236I CGCG 2 cut(s) 447, 960
BshFI GGCC 2 cut(s) 410, 902
BsiHKAI GWGCWC 1 cut(s) 580
BsiSI CCGG 3 cut(s) 269, 288, 411
BslFI GGGAC 3 cut(s) 87, 429, 957
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 3 cut(s) 87, 429, 957
BsnI GGCC 2 cut(s) 410, 902
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 5 cut(s) 262, 309, 337, 712, 836
Bsp1720I GCTNAGC 2 cut(s) 69, 127
BspACI CCGC 1 cut(s) 607
BspANI GGCC 2 cut(s) 410, 902
BspCNI CTCAG 6 cut(s) 82, 140, 247, 680, 699, 763
BspFNI CGCG 2 cut(s) 447, 960
BspLI GGNNCC 3 cut(s) 417, 714, 738
BspMAI CTGCAG 1 cut(s) 350
BspPI GGATC 4 cut(s) 270, 332, 707, 720
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 598, 684
BsrI ACTGG 2 cut(s) 441, 940
BssECI CCNNGG 2 cut(s) 318, 411
BssMI GATC 5 cut(s) 262, 309, 337, 712, 836
BssNI GRCGYC 1 cut(s) 484
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 4 cut(s) 61, 166, 307, 850
Bst6I CTCTTC 3 cut(s) 183, 191, 448
BstACI GRCGYC 1 cut(s) 484
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 8 cut(s) 69, 74, 118, 127, 255, 667, 686, 750
BstFNI CGCG 2 cut(s) 447, 960
BstHHI GCGC 2 cut(s) 447, 960
BstKTI GATC 5 cut(s) 265, 312, 340, 715, 839
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 5 cut(s) 262, 309, 337, 712, 836
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 267, 410
BstSFI CTRYAG 1 cut(s) 346
BstSLI GKGCMC 1 cut(s) 580
BstUI CGCG 2 cut(s) 447, 960
BstV1I GCAGC 3 cut(s) 310, 694, 862
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 712
BstXI CCANNNNNNTGG 1 cut(s) 733
BstYI RGATCY 1 cut(s) 712
BsuRI GGCC 2 cut(s) 410, 902
BtgZI GCGATG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 900
CfoI GCGC 2 cut(s) 447, 960
Cfr13I GGNCC 2 cut(s) 416, 736
CseI GACGC 1 cut(s) 473
CviAII CATG 7 cut(s) 99, 363, 526, 539, 559, 733, 904
DdeI CTNAG 8 cut(s) 69, 74, 118, 127, 255, 667, 686, 750
DpnI GATC 5 cut(s) 264, 311, 339, 714, 838
DpnII GATC 5 cut(s) 262, 309, 337, 712, 836
DrdI GACNNNNNNGTC 1 cut(s) 696
DseDI GACNNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 3 cut(s) 183, 191, 448
EarI CTCTTC 3 cut(s) 183, 191, 448
Eco130I CCWWGG 1 cut(s) 318
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 416, 736
Eco57I CTGAAG 2 cut(s) 207, 767
EcoT14I CCWWGG 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 7 cut(s) 102, 366, 529, 542, 562, 736, 907
FaqI GGGAC 3 cut(s) 87, 429, 957
FatI CATG 7 cut(s) 98, 362, 525, 538, 558, 732, 903
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 3 cut(s) 324, 683, 876
Fsp4HI GCNGC 3 cut(s) 324, 683, 876
FspBI CTAG 2 cut(s) 390, 509
GlaI GCGC 2 cut(s) 446, 959
GluI GCNGC 3 cut(s) 324, 683, 876
HaeIII GGCC 2 cut(s) 410, 902
HapII CCGG 3 cut(s) 269, 288, 411
HgaI GACGC 1 cut(s) 473
HhaI GCGC 2 cut(s) 447, 960
Hin1I GRCGYC 1 cut(s) 484
Hin1II CATG 7 cut(s) 102, 366, 529, 542, 562, 736, 907
Hin6I GCGC 2 cut(s) 445, 958
HinP1I GCGC 2 cut(s) 445, 958
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HinfI GANTC 6 cut(s) 113, 183, 232, 621, 778, 830
HpaII CCGG 3 cut(s) 269, 288, 411
HphI GGTGA 2 cut(s) 257, 796
Hpy166II GTNNAC 3 cut(s) 578, 846, 853
Hpy188I TCNGA 4 cut(s) 480, 689, 753, 811
Hpy188III TCNNGA 3 cut(s) 509, 775, 834
Hpy8I GTNNAC 3 cut(s) 578, 846, 853
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 4 cut(s) 61, 166, 307, 850
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 8 cut(s) 69, 74, 118, 127, 255, 667, 686, 750
Hsp92I GRCGYC 1 cut(s) 484
Hsp92II CATG 7 cut(s) 102, 366, 529, 542, 562, 736, 907
HspAI GCGC 2 cut(s) 445, 958
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 5 cut(s) 262, 309, 337, 712, 836
Lsp1109I GCAGC 3 cut(s) 310, 694, 862
LweI GCATC 2 cut(s) 208, 872
MaeI CTAG 2 cut(s) 390, 509
MaeIII GTNAC 1 cut(s) 160
MalI GATC 5 cut(s) 264, 311, 339, 714, 838
MboI GATC 5 cut(s) 262, 309, 337, 712, 836
MboII GAAGA 6 cut(s) 170, 178, 181, 465, 479, 773
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 3 cut(s) 720, 755, 951
MlyI GAGTC 2 cut(s) 122, 177
MmeI TCCRAC 1 cut(s) 639
MnlI CCTC 5 cut(s) 54, 474, 501, 759, 817
MroXI GAANNNNTTC 2 cut(s) 61, 143
MseI TTAA 5 cut(s) 519, 663, 705, 729, 882
MslI CAYNNNNRTG 1 cut(s) 731
MspI CCGG 3 cut(s) 269, 288, 411
MspR9I CCNGG 2 cut(s) 269, 412
MvnI CGCG 2 cut(s) 447, 960
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 2 cut(s) 269, 412
NdeII GATC 5 cut(s) 262, 309, 337, 712, 836
NlaIII CATG 7 cut(s) 102, 366, 529, 542, 562, 736, 907
NlaIV GGNNCC 3 cut(s) 417, 714, 738
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 102
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 2 cut(s) 61, 143
PfeI GAWTC 4 cut(s) 232, 621, 778, 830
PkrI GCNGC 3 cut(s) 325, 684, 877
PleI GAGTC 2 cut(s) 121, 177
PpsI GAGTC 2 cut(s) 121, 177
PscI ACATGT 1 cut(s) 98
PspN4I GGNNCC 3 cut(s) 417, 714, 738
PspPI GGNCC 2 cut(s) 416, 736
PstI CTGCAG 1 cut(s) 350
PsuI RGATCY 1 cut(s) 712
RseI CAYNNNNRTG 1 cut(s) 731
SaqAI TTAA 5 cut(s) 519, 663, 705, 729, 882
SatI GCNGC 3 cut(s) 324, 683, 876
Sau3AI GATC 5 cut(s) 262, 309, 337, 712, 836
Sau96I GGNCC 2 cut(s) 416, 736
SchI GAGTC 2 cut(s) 122, 177
ScrFI CCNGG 2 cut(s) 269, 412
SduI GDGCHC 1 cut(s) 580
SfaNI GCATC 2 cut(s) 208, 872
SfcI CTRYAG 1 cut(s) 346
SinI GGWCC 2 cut(s) 416, 736
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 942
SmoI CTYRAG 1 cut(s) 942
Sse9I AATT 3 cut(s) 720, 755, 951
SsiI CCGC 1 cut(s) 607
SspMI CTAG 2 cut(s) 390, 509
StyD4I CCNGG 2 cut(s) 267, 410
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 4 cut(s) 61, 166, 307, 850
TaqI TCGA 5 cut(s) 137, 181, 330, 461, 651
TasI AATT 3 cut(s) 720, 755, 951
TfiI GAWTC 4 cut(s) 232, 621, 778, 830
Tru1I TTAA 5 cut(s) 519, 663, 705, 729, 882
Tru9I TTAA 5 cut(s) 519, 663, 705, 729, 882
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 323, 682, 875
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 7, 351
TspGWI ACGGA 2 cut(s) 418, 842
TspRI CASTG 1 cut(s) 231
VneI GTGCAC 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 416, 736
XapI RAATTY 2 cut(s) 755, 951
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 2 cut(s) 61, 143
XspI CTAG 2 cut(s) 390, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.