AT2G19580

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016071
Physical Location & Seq
Reverse (-)
8472134 .. 8475153
3020 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19580.1

Sequence Viewer

Length: 813 bp
ATGGCGTTAGCGAATAACTTAACGGCGATACTCAACTTACTAGCGTTACTCTGTTCCATACCAATAACGGCGTCAGGTATATGGCTAGCTTCAAAGCCAGACAACGAGTGTGTCAATCTCCTCCGTTGGCCCGTTGTCGTCCTCGGCGTTCTCATCCTCGTCGTCTCCGCCACAGGCTTCATCGGCGCCTACAAGTACAAGGAAACTCTACTGGCGGTTTACTTGTGCTGTATGGCGATATTGATCGGACTTTTGCTGGTGGTTCTTATATTTGCATTCGTCGTGACCCGGCCCGATGGATCGTATCGGGTTCCGGGTAGAGGTTATAAAGAGTATAGGCTTGAAGGGTTCTCGAATTGGCTTAAGGAGAACGTTGTGGATTCCAAGAACTGGGGAAGGCTAAGGGCTTGTTTGGCTGATACTAATGTTTGTCCTAAACTCAACCAAGAATTCATCACCGCCGATCAGTTCTTCTCCTCCTCTAAGATCACTCCTCTCCAGTCCGGCTGCTGCAAACCACCAACCGCATGTGGCTACAACTTTGTGAACCCAACACTGTGGCTAAATCCAACCAATATGGCTGCAGACGCAGACTGTTACTTATGGAGCAATGACCAAAGCCAGCTTTGTTACAATTGCAACTCATGCAAAGCTGGTTTATTGGGAAACCTTAGAAAAGAATGGCGTAAAGCAAATCTCATACTTATCATCACAGTCGTTGTTCTCATATGGGTTTATGTTATTGCTTGTAGCGCGTTTAGGAATGCTCAGACTGAGGATCTCTTCCGCAAATACAAACAAGGTTGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

270

Amino Acids

30.13

Weight (kDa)

8.81

Isoelectric Point (pI)

31.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 6 - 251 1.5e-34 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19580
fragaria_vesca FvH4_1g07210 FvH4_1g07210
malus_domestica MD02G1076600.v1.1 MD15G1205300.v1.1
prunus_persica Prupe.7G211800_v2.0.a1
pyrus_communis pycom02g06090
rosa_laevigata RLG00000016369
rosa_multiflora Rmu_sc0006865.1_g000011
rosa_roxburghii Rroxscaffold_2G00148500
rosa_rugosa Rorug02G0032900
rosa_samantha Rh2AG078400 Rh2CG082000 Rh2DG077300
rosa_wichuraiana Rw2G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 390
AccII CGCG 1 cut(s) 755
AciI CCGC 5 cut(s) 168, 215, 459, 525, 787
AclI AACGTT 1 cut(s) 372
AclWI GGATC 2 cut(s) 307, 786
AcsI RAATTY 1 cut(s) 449
AcyI GRCGYC 2 cut(s) 71, 186
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 320, 390
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 2 cut(s) 93, 344
AluBI AGCT 3 cut(s) 89, 625, 653
AluI AGCT 3 cut(s) 89, 625, 653
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 307, 786
AoxI GGCC 2 cut(s) 128, 290
ApeKI GCWGC 3 cut(s) 507, 510, 581
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 2 cut(s) 188, 755
AspS9I GGNCC 2 cut(s) 129, 291
AsuC2I CCSGG 2 cut(s) 289, 315
AsuHPI GGTGA 1 cut(s) 448
AsuNHI GCTAGC 1 cut(s) 85
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 3 cut(s) 494, 497, 568
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 39, 84
BcnI CCSGG 2 cut(s) 289, 315
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 41, 86
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 189
BfrI CTTAAG 1 cut(s) 362
BisI GCNGC 3 cut(s) 508, 511, 582
BlsI GCNGC 3 cut(s) 509, 512, 583
Bme1390I CCNGG 2 cut(s) 289, 315
BmgT120I GGNCC 2 cut(s) 129, 291
BmiI GGNNCC 2 cut(s) 187, 312
BmrFI CCNGG 2 cut(s) 289, 315
BmrI ACTGGG 1 cut(s) 400
BmtI GCTAGC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 401
BpuMI CCSGG 2 cut(s) 289, 315
BsaBI GATNNNNATC 1 cut(s) 242
BsaHI GRCGYC 2 cut(s) 71, 186
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 390
Bse1I ACTGG 3 cut(s) 216, 395, 499
Bse3DI GCAATG 1 cut(s) 616
Bse8I GATNNNNATC 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 2 cut(s) 320, 390
BseMI GCAATG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 765, 782
BseNI ACTGG 3 cut(s) 216, 395, 499
BseRI GAGGAG 4 cut(s) 110, 466, 469, 483
BseXI GCAGC 3 cut(s) 494, 497, 568
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 2 cut(s) 130, 292
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 3 cut(s) 289, 314, 504
BslI CCNNNNNNNGG 2 cut(s) 320, 390
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmI GAATGC 2 cut(s) 275, 769
BsnI GGCC 2 cut(s) 130, 292
Bsp143I GATC 5 cut(s) 243, 299, 463, 486, 778
BspACI CCGC 5 cut(s) 168, 215, 459, 525, 787
BspANI GGCC 2 cut(s) 130, 292
BspCNI CTCAG 2 cut(s) 766, 781
BspFNI CGCG 1 cut(s) 755
BspLI GGNNCC 2 cut(s) 187, 312
BspMAI CTGCAG 1 cut(s) 586
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 2 cut(s) 307, 786
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 616
BsrI ACTGG 3 cut(s) 216, 395, 499
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 5 cut(s) 243, 299, 463, 486, 778
BssNI GRCGYC 2 cut(s) 71, 186
Bst4CI ACNGT 3 cut(s) 558, 596, 715
Bst6I CTCTTC 1 cut(s) 788
BstACI GRCGYC 2 cut(s) 71, 186
BstAFI CTTAAG 1 cut(s) 362
BstAPI GCANNNNNTGC 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 87, 623
BstDEI CTNAG 5 cut(s) 401, 483, 671, 768, 774
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 755
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 2 cut(s) 188, 755
BstKTI GATC 5 cut(s) 246, 302, 466, 489, 781
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 5 cut(s) 243, 299, 463, 486, 778
BstMWI GCNNNNNNNGC 5 cut(s) 183, 413, 587, 645, 752
BstNSI RCATGY 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 287, 313
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 1 cut(s) 755
BstV1I GCAGC 3 cut(s) 494, 497, 568
BstX2I RGATCY 1 cut(s) 778
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 1 cut(s) 778
BsuRI GGCC 2 cut(s) 130, 292
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 554
Cac8I GCNNGC 2 cut(s) 87, 623
CfoI GCGC 2 cut(s) 188, 755
Cfr13I GGNCC 2 cut(s) 129, 291
CseI GACGC 2 cut(s) 60, 596
Csp6I GTAC 1 cut(s) 196
CviAII CATG 2 cut(s) 528, 645
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 5 cut(s) 401, 483, 671, 768, 774
DinI GGCGCC 1 cut(s) 187
DpnI GATC 5 cut(s) 245, 301, 465, 488, 780
DpnII GATC 5 cut(s) 243, 299, 463, 486, 778
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
EciI GGCGGA 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 449
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 2 cut(s) 531, 648
FatI CATG 2 cut(s) 527, 644
FauNDI CATATG 1 cut(s) 728
Fnu4HI GCNGC 3 cut(s) 508, 511, 582
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 3 cut(s) 508, 511, 582
FspBI CTAG 2 cut(s) 41, 86
GlaI GCGC 2 cut(s) 187, 754
GluI GCNGC 3 cut(s) 508, 511, 582
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 130, 292
HapII CCGG 3 cut(s) 289, 314, 504
HgaI GACGC 2 cut(s) 60, 596
HhaI GCGC 2 cut(s) 188, 755
Hin1I GRCGYC 2 cut(s) 71, 186
Hin1II CATG 2 cut(s) 531, 648
Hin6I GCGC 2 cut(s) 186, 753
HinP1I GCGC 2 cut(s) 186, 753
HinfI GANTC 1 cut(s) 380
HpaII CCGG 3 cut(s) 289, 314, 504
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 2 cut(s) 220, 547
Hpy188I TCNGA 2 cut(s) 248, 771
Hpy188III TCNNGA 2 cut(s) 283, 352
Hpy8I GTNNAC 2 cut(s) 220, 547
Hpy99I CGWCG 2 cut(s) 164, 284
HpyAV CCTTC 2 cut(s) 338, 390
HpyCH4III ACNGT 3 cut(s) 558, 596, 715
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 275, 513, 584, 639, 648
HpyF10VI GCNNNNNNNGC 5 cut(s) 183, 413, 587, 645, 752
HpyF3I CTNAG 5 cut(s) 401, 483, 671, 768, 774
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 71, 186
Hsp92II CATG 2 cut(s) 531, 648
HspAI GCGC 2 cut(s) 186, 753
KasI GGCGCC 1 cut(s) 185
Kzo9I GATC 5 cut(s) 243, 299, 463, 486, 778
LmnI GCTCC 1 cut(s) 606
Lsp1109I GCAGC 3 cut(s) 494, 497, 568
MaeI CTAG 2 cut(s) 41, 86
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 4 cut(s) 45, 283, 596, 629
MalI GATC 5 cut(s) 245, 301, 465, 488, 780
MboI GATC 5 cut(s) 243, 299, 463, 486, 778
MboII GAAGA 2 cut(s) 463, 775
MfeI CAATTG 1 cut(s) 634
MflI RGATCY 1 cut(s) 778
MluCI AATT 3 cut(s) 355, 449, 634
Mly113I GGCGCC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 8 cut(s) 131, 152, 167, 314, 487, 490, 504, 769
MseI TTAA 2 cut(s) 20, 363
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 289, 314, 504
MspR9I CCNGG 2 cut(s) 289, 315
MunI CAATTG 1 cut(s) 634
Mva1269I GAATGC 2 cut(s) 275, 769
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 5 cut(s) 183, 413, 587, 645, 752
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 2 cut(s) 289, 315
NdeI CATATG 1 cut(s) 728
NdeII GATC 5 cut(s) 243, 299, 463, 486, 778
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 2 cut(s) 531, 648
NlaIV GGNNCC 2 cut(s) 187, 312
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 2 cut(s) 275, 769
PfeI GAWTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 509, 512, 583
PluTI GGCGCC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 372
PspN4I GGNNCC 2 cut(s) 187, 312
PspPI GGNCC 2 cut(s) 129, 291
PstI CTGCAG 1 cut(s) 586
PsuI RGATCY 1 cut(s) 778
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 20, 363
SatI GCNGC 3 cut(s) 508, 511, 582
Sau3AI GATC 5 cut(s) 243, 299, 463, 486, 778
Sau96I GGNCC 2 cut(s) 129, 291
ScrFI CCNGG 2 cut(s) 289, 315
SetI ASST 8 cut(s) 79, 91, 325, 375, 627, 655, 672, 805
SfcI CTRYAG 1 cut(s) 582
SfoI GGCGCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 3 cut(s) 355, 449, 634
SsiI CCGC 5 cut(s) 168, 215, 459, 525, 787
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 41, 86
StyD4I CCNGG 2 cut(s) 287, 313
TaaI ACNGT 3 cut(s) 558, 596, 715
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 353
TasI AATT 3 cut(s) 355, 449, 634
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 380
Tru1I TTAA 2 cut(s) 20, 363
Tru9I TTAA 2 cut(s) 20, 363
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 507, 510, 581
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 169, 442
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 561
Van91I CCANNNNNTGG 1 cut(s) 390
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 1 cut(s) 449
XceI RCATGY 1 cut(s) 531
XspI CTAG 2 cut(s) 41, 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.