FvH4_1g07210

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016071
Physical Location & Seq
Forward (+)
3814913 .. 3817610
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07210.t2

Sequence Viewer

Length: 810 bp
ATGGGAGTGAGCAACAAGATCACAGCAGTCCTCAACTTCATGGCCCTTCTCTGCTCCATCCCCATAATGGCCGCCGGCATCTGGTTGGCCTCCAAGCCCGACAACGAGTGCATCCACTCTGTCCGGTGGCCGGTCTTCGTCCTCGGCGTCCTCATCCTCCTTGTCTCCCTCGCCGGCTTCATAGGCGCCTACTTCAACAAACAAGGCCTTCTTGCTCTCTACCTCTTCTGTATGGCCGCCCTCATAATCCTCCTACTTATTGTCCTCATATTTGCTTTCACTGTTACAAGGCCTGACGGAAGCTACGCCGTTCCGGGCAGGGCTTACCGGGAGTATCGGCTGGAAGGGTTTTCTAAGTGGCTTAGAGATTACGTTACTGATTCCAGCAATTGGCAGAAGATAAGGGTCTGTTTGGCTGATTCTGATACTTGTCCTAAGCTCACTGAGAATTACATCACTGCTGATCAGTTCTTTACTGCTCACATCTCTCCTCTTCAGGCAAGATGTTGTAAACCTCCAACAGCTTGTGGCTACAACTATGTGAACCCAAATCTGTGGATAAACCCAGTATACCCTTCAGCAGACCAAGACTGTTTGCTGTGGAATAATGACCAAAACATACTGTGCTACAATTGCAACTCTTGCAGGGCTGGTTTACTAGGCAACTTGAGAAAAGAATGGAGAAGAGCCAATGTGATCCTAATCGTGGCAGTGGTGATTCTCATCTGGGTCTATGTAGTTGCCTGCAGCGCCTTCAAGAATGCGCAAACAGAGGAGCTCTTCCGCCGTTACAAGCAGGGATGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

270

Amino Acids

30.42

Weight (kDa)

8.76

Isoelectric Point (pI)

45.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 5 - 250 2.7e-36 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19580
fragaria_vesca FvH4_1g07210 FvH4_1g07210
malus_domestica MD02G1076600.v1.1 MD15G1205300.v1.1
prunus_persica Prupe.7G211800_v2.0.a1
pyrus_communis pycom02g06090
rosa_laevigata RLG00000016369
rosa_multiflora Rmu_sc0006865.1_g000011
rosa_roxburghii Rroxscaffold_2G00148500
rosa_rugosa Rorug02G0032900
rosa_samantha Rh2AG078400 Rh2CG082000 Rh2DG077300
rosa_wichuraiana Rw2G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 765
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 390
AccI GTMKAC 1 cut(s) 570
AciI CCGC 3 cut(s) 72, 237, 784
AclWI GGATC 1 cut(s) 691
AcoI YGGCCR 3 cut(s) 69, 128, 234
AcuI CTGAAG 2 cut(s) 479, 561
AcyI GRCGYC 2 cut(s) 147, 186
AfiI CCNNNNNNNGG 5 cut(s) 67, 81, 130, 390, 706
AgsI TTSAA 2 cut(s) 196, 757
AluBI AGCT 4 cut(s) 303, 439, 524, 778
AluI AGCT 4 cut(s) 303, 439, 524, 778
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 1 cut(s) 691
AoxI GGCC 7 cut(s) 42, 69, 87, 128, 205, 234, 290
ApeKI GCWGC 1 cut(s) 747
AspLEI GCGC 3 cut(s) 188, 752, 766
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 315, 329
AsuHPI GGTGA 1 cut(s) 727
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 1 cut(s) 759
BccI CCATC 2 cut(s) 65, 795
BceAI ACGGC 2 cut(s) 293, 771
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 2 cut(s) 315, 329
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 1 cut(s) 745
BfoI RGCGCY 2 cut(s) 189, 753
BisI GCNGC 3 cut(s) 72, 237, 748
BlsI GCNGC 3 cut(s) 73, 238, 749
Bme1390I CCNGG 2 cut(s) 315, 329
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 315, 329
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 2 cut(s) 87, 120
BmuI ACTGGG 1 cut(s) 560
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 2 cut(s) 315, 329
BsaBI GATNNNNATC 2 cut(s) 701, 722
BsaHI GRCGYC 2 cut(s) 147, 186
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 81, 130, 390, 706
Bse118I RCCGGY 3 cut(s) 74, 130, 173
Bse1I ACTGG 1 cut(s) 566
Bse8I GATNNNNATC 2 cut(s) 701, 722
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 4 cut(s) 57, 111, 153, 806
BseJI GATNNNNATC 2 cut(s) 701, 722
BseLI CCNNNNNNNGG 5 cut(s) 67, 81, 130, 390, 706
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 566
BseRI GAGGAG 2 cut(s) 480, 788
BseXI GCAGC 1 cut(s) 759
BshFI GGCC 7 cut(s) 44, 71, 89, 130, 207, 236, 292
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 780
BsiSI CCGG 6 cut(s) 75, 124, 131, 174, 314, 328
BslI CCNNNNNNNGG 5 cut(s) 67, 81, 130, 390, 706
BsmAI GTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 7 cut(s) 44, 71, 89, 130, 207, 236, 292
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 3 cut(s) 18, 463, 696
BspACI CCGC 3 cut(s) 72, 237, 784
BspANI GGCC 7 cut(s) 44, 71, 89, 130, 207, 236, 292
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 749
BspPI GGATC 1 cut(s) 691
BspQI GCTCTTC 2 cut(s) 679, 785
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 3 cut(s) 74, 130, 173
BsrI ACTGG 1 cut(s) 566
BssAI RCCGGY 3 cut(s) 74, 130, 173
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 3 cut(s) 18, 463, 696
BssNAI GTATAC 1 cut(s) 571
BssNI GRCGYC 2 cut(s) 147, 186
Bst1107I GTATAC 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 283, 593, 624
Bst6I CTCTTC 4 cut(s) 230, 498, 679, 785
BstACI GRCGYC 2 cut(s) 147, 186
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 76, 175, 745
BstDEI CTNAG 4 cut(s) 354, 362, 435, 444
BstF5I GGATG 4 cut(s) 57, 111, 153, 806
BstH2I RGCGCY 2 cut(s) 189, 753
BstHHI GCGC 3 cut(s) 188, 752, 766
BstKTI GATC 3 cut(s) 21, 466, 699
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 3 cut(s) 18, 463, 696
BstMWI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
BstSCI CCNGG 2 cut(s) 313, 327
BstSFI CTRYAG 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 759
BstV2I GAAGAC 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 555
BstZ17I GTATAC 1 cut(s) 571
BsuRI GGCC 7 cut(s) 44, 71, 89, 130, 207, 236, 292
BtsCI GGATG 4 cut(s) 57, 111, 153, 806
BtsI GCAGTG 2 cut(s) 456, 717
BtsIMutI CAGTG 4 cut(s) 279, 441, 456, 717
Cac8I GCNNGC 3 cut(s) 76, 175, 745
CfoI GCGC 3 cut(s) 188, 752, 766
Cfr10I RCCGGY 3 cut(s) 74, 130, 173
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 1 cut(s) 136
CviAII CATG 1 cut(s) 40
DdeI CTNAG 4 cut(s) 354, 362, 435, 444
DinI GGCGCC 1 cut(s) 187
DpnI GATC 3 cut(s) 20, 465, 698
DpnII GATC 3 cut(s) 18, 463, 696
EaeI YGGCCR 3 cut(s) 69, 128, 234
Eam1104I CTCTTC 4 cut(s) 230, 498, 679, 785
EarI CTCTTC 4 cut(s) 230, 498, 679, 785
EciI GGCGGA 1 cut(s) 773
Ecl136II GAGCTC 1 cut(s) 778
Eco147I AGGCCT 2 cut(s) 207, 292
Eco24I GRGCYC 1 cut(s) 780
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 479, 561
EcoICRI GAGCTC 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 780
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
FaeI CATG 1 cut(s) 43
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 463
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 72, 237, 748
FokI GGATG 3 cut(s) 44, 98, 140
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 3 cut(s) 72, 237, 748
FspBI CTAG 1 cut(s) 659
FspI TGCGCA 1 cut(s) 765
GlaI GCGC 3 cut(s) 187, 751, 765
GluI GCNGC 3 cut(s) 72, 237, 748
HaeII RGCGCY 2 cut(s) 189, 753
HaeIII GGCC 7 cut(s) 44, 71, 89, 130, 207, 236, 292
HapII CCGG 6 cut(s) 75, 124, 131, 174, 314, 328
HgaI GACGC 1 cut(s) 136
HhaI GCGC 3 cut(s) 188, 752, 766
Hin1I GRCGYC 2 cut(s) 147, 186
Hin1II CATG 1 cut(s) 43
Hin6I GCGC 3 cut(s) 186, 750, 764
HinP1I GCGC 3 cut(s) 186, 750, 764
HinfI GANTC 3 cut(s) 380, 419, 718
HpaII CCGG 6 cut(s) 75, 124, 131, 174, 314, 328
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 4 cut(s) 512, 544, 571, 656
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 1 cut(s) 757
Hpy8I GTNNAC 4 cut(s) 512, 544, 571, 656
HpyAV CCTTC 5 cut(s) 56, 218, 338, 585, 763
HpyCH4III ACNGT 3 cut(s) 283, 593, 624
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 111, 636, 645, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
HpyF3I CTNAG 4 cut(s) 354, 362, 435, 444
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 2 cut(s) 147, 186
Hsp92II CATG 1 cut(s) 43
HspAI GCGC 3 cut(s) 186, 750, 764
KasI GGCGCC 1 cut(s) 185
KroI GCCGGC 2 cut(s) 74, 173
KroNI GCCGGC 2 cut(s) 76, 175
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 18, 463, 696
LguI GCTCTTC 2 cut(s) 679, 785
LmnI GCTCC 2 cut(s) 59, 775
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 2 cut(s) 87, 120
MaeI CTAG 1 cut(s) 659
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 283, 373, 788
MalI GATC 3 cut(s) 20, 465, 698
MboI GATC 3 cut(s) 18, 463, 696
MboII GAAGA 6 cut(s) 127, 217, 409, 485, 696, 772
MfeI CAATTG 2 cut(s) 388, 631
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 3 cut(s) 388, 448, 631
Mly113I GGCGCC 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 542
MroNI GCCGGC 2 cut(s) 74, 173
MspI CCGG 6 cut(s) 75, 124, 131, 174, 314, 328
MspR9I CCNGG 2 cut(s) 315, 329
MunI CAATTG 2 cut(s) 388, 631
Mva1269I GAATGC 1 cut(s) 766
MwoI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
NaeI GCCGGC 2 cut(s) 76, 175
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 2 cut(s) 315, 329
NdeII GATC 3 cut(s) 18, 463, 696
NgoMIV GCCGGC 2 cut(s) 74, 173
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 123
NsbI TGCGCA 1 cut(s) 765
PceI AGGCCT 2 cut(s) 207, 292
PciSI GCTCTTC 2 cut(s) 679, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 766
PdiI GCCGGC 2 cut(s) 76, 175
PfeI GAWTC 3 cut(s) 380, 419, 718
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 3 cut(s) 73, 238, 749
PluTI GGCGCC 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 749
SacI GAGCTC 1 cut(s) 780
SapI GCTCTTC 2 cut(s) 679, 785
SatI GCNGC 3 cut(s) 72, 237, 748
Sau3AI GATC 3 cut(s) 18, 463, 696
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 2 cut(s) 315, 329
SduI GDGCHC 1 cut(s) 780
SetI ASST 7 cut(s) 225, 305, 375, 441, 517, 526, 780
SfaNI GCATC 2 cut(s) 87, 120
SfcI CTRYAG 1 cut(s) 745
SfoI GGCGCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 3 cut(s) 388, 448, 631
SseBI AGGCCT 2 cut(s) 207, 292
SsiI CCGC 3 cut(s) 72, 237, 784
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 1 cut(s) 659
SstI GAGCTC 1 cut(s) 780
StuI AGGCCT 2 cut(s) 207, 292
StyD4I CCNGG 2 cut(s) 313, 327
TaaI ACNGT 3 cut(s) 283, 593, 624
TaiI ACGT 1 cut(s) 375
TasI AATT 3 cut(s) 388, 448, 631
TauI GCSGC 2 cut(s) 74, 239
TfiI GAWTC 3 cut(s) 380, 419, 718
TscAI CASTG 4 cut(s) 286, 448, 463, 717
TseI GCWGC 1 cut(s) 747
TspDTI ATGAA 2 cut(s) 28, 169
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 4 cut(s) 286, 448, 463, 717
Van91I CCANNNNNTGG 1 cut(s) 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 570
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.