Prupe.7G211800_v2.0.a1

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016071
Physical Location & Seq
Reverse (-)
19334539 .. 19336797
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G211800.1

Sequence Viewer

Length: 810 bp
ATGGGAGTGAGCAACAAAATAACTGCAATTCTCAATTTCATAGCCCTCCTCTGCGCCATCCCAATCATGGCCGCAGGCATATGGCTTGCCTCAAAGCCAGACAACGAGTGCATCCACTCTTTTCGCTGGCCAGTCTTTGTTCTTGGTGCTCTCATGCTGCTTGTCTCTCTTGCTGGCTTTATTGGTGCCTGTTTTAACAAACAGGGTCTCTTGGCTCTCTACCTTTTCTGCATGGCAGCCCTCATCATCCTGATCCTTGTGCTGCTCATCTTCGCTTTCACTGTTACAAGGCCTGATGGAAGCTATTCTGTGCCTGGTAGGGCCTATAGAGAGTATAGGCTTGATGGGTTTTCCAAGTGGCTTAGGGACTATGTCACGGACTCCGGGACTTGGCAGAAGATAAGGACTTGTTTGGCTGATTCTGATACTTGTCCTAAGCTCAACCAGCAGTACATCTCTGCTGATCAGTTCTTCATGGCTCACATCTCTCCTCTTCAGTCAGGATGTTGTAAACCTCCAACACTGTGTGGCTACAACTATGTGAACCCAACATTGTGGATAAACCCAGTAAACCCGGGAGCTGATCAGGACTGCTTGTTATGGAACAATGACCAAAATCTGCTGTGCTACAACTGCAATTCTTGCAGGGCTGGCCTATTGGGGAACCTGAGGAAAGAGTGGAGAAGGGCAAATGTGATCCTTATCGTGGCAGTGGTGGTGCTCATTTGGGTCTATCTTATTGCCTGCAGTGCCTTCAAGAATGCACAAACAGAAGAACTCTTCCGCCGCTACAAACAGGGATGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

270

Amino Acids

30.23

Weight (kDa)

8.74

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19580
fragaria_vesca FvH4_1g07210 FvH4_1g07210
malus_domestica MD02G1076600.v1.1 MD15G1205300.v1.1
prunus_persica Prupe.7G211800_v2.0.a1
pyrus_communis pycom02g06090
rosa_laevigata RLG00000016369
rosa_multiflora Rmu_sc0006865.1_g000011
rosa_roxburghii Rroxscaffold_2G00148500
rosa_rugosa Rorug02G0032900
rosa_samantha Rh2AG078400 Rh2CG082000 Rh2DG077300
rosa_wichuraiana Rw2G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 3 cut(s) 72, 784, 787
AclWI GGATC 2 cut(s) 247, 691
AcoI YGGCCR 2 cut(s) 69, 128
AcuI CTGAAG 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 527
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 3 cut(s) 67, 390, 706
AgsI TTSAA 1 cut(s) 757
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 3 cut(s) 303, 439, 581
AluI AGCT 3 cut(s) 303, 439, 581
Alw21I GWGCWC 2 cut(s) 151, 723
Alw26I GTCTC 2 cut(s) 169, 212
AlwI GGATC 2 cut(s) 247, 691
Ama87I CYCGRG 1 cut(s) 574
AoxI GGCC 5 cut(s) 69, 128, 290, 321, 652
ApeKI GCWGC 3 cut(s) 157, 236, 262
Asp700I GAANNNNTTC 1 cut(s) 304
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 321
AsuC2I CCSGG 3 cut(s) 385, 575, 576
AvaI CYCGRG 1 cut(s) 574
AxyI CCTNAGG 1 cut(s) 668
BalI TGGCCA 1 cut(s) 130
BanI GGYRCC 1 cut(s) 185
Bbv12I GWGCWC 2 cut(s) 151, 723
BbvI GCAGC 3 cut(s) 144, 248, 249
BccI CCATC 4 cut(s) 65, 290, 338, 795
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 2 cut(s) 463, 583
BcnI CCSGG 3 cut(s) 385, 575, 576
BcoDI GTCTC 2 cut(s) 169, 212
BfmI CTRYAG 2 cut(s) 325, 745
BisI GCNGC 5 cut(s) 72, 158, 237, 263, 787
BlsI GCNGC 5 cut(s) 73, 159, 238, 264, 788
Bme1390I CCNGG 4 cut(s) 315, 385, 575, 576
BmeT110I CYCGRG 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 2 cut(s) 187, 665
BmrFI CCNGG 4 cut(s) 315, 385, 575, 576
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 560
Bpu10I CCTNAGC 2 cut(s) 362, 435
BpuMI CCSGG 3 cut(s) 385, 575, 576
BsaBI GATNNNNATC 1 cut(s) 701
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 390, 706
Bse1I ACTGG 2 cut(s) 131, 566
Bse21I CCTNAGG 1 cut(s) 668
Bse8I GATNNNNATC 1 cut(s) 701
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 5 cut(s) 57, 111, 246, 509, 806
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 3 cut(s) 67, 390, 706
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 131, 566
BseRI GAGGAG 2 cut(s) 38, 480
BseXI GCAGC 3 cut(s) 144, 248, 249
BshFI GGCC 5 cut(s) 71, 130, 292, 323, 654
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 2 cut(s) 151, 723
BsiHKCI CYCGRG 1 cut(s) 574
BsiSI CCGG 2 cut(s) 384, 575
BslFI GGGAC 2 cut(s) 380, 400
BslI CCNNNNNNNGG 3 cut(s) 67, 390, 706
BsmAI GTCTC 2 cut(s) 169, 212
BsmFI GGGAC 2 cut(s) 380, 400
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 5 cut(s) 71, 130, 292, 323, 654
Bso31I GGTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 151, 723
Bsp143I GATC 4 cut(s) 252, 463, 583, 696
BspACI CCGC 3 cut(s) 72, 784, 787
BspANI GGCC 5 cut(s) 71, 130, 292, 323, 654
BspCNI CTCAG 1 cut(s) 660
BspLI GGNNCC 2 cut(s) 187, 665
BspMAI CTGCAG 1 cut(s) 749
BspPI GGATC 2 cut(s) 247, 691
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 131, 566
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 4 cut(s) 252, 463, 583, 696
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 283, 525
Bst6I CTCTTC 2 cut(s) 498, 785
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 6 cut(s) 76, 87, 128, 175, 652, 745
BstDEI CTNAG 3 cut(s) 362, 435, 668
BstF5I GGATG 5 cut(s) 57, 111, 246, 509, 806
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 255, 466, 586, 699
BstMAI GTCTC 2 cut(s) 169, 212
BstMBI GATC 4 cut(s) 252, 463, 583, 696
BstMWI GCNNNNNNNGC 5 cut(s) 445, 633, 642, 651, 749
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 4 cut(s) 313, 383, 573, 574
BstSFI CTRYAG 2 cut(s) 325, 745
BstV1I GCAGC 3 cut(s) 144, 248, 249
BstXI CCANNNNNNTGG 1 cut(s) 555
Bsu36I CCTNAGG 1 cut(s) 668
BsuRI GGCC 5 cut(s) 71, 130, 292, 323, 654
BtsCI GGATG 5 cut(s) 57, 111, 246, 509, 806
BtsI GCAGTG 2 cut(s) 717, 754
BtsIMutI CAGTG 4 cut(s) 279, 521, 717, 754
Cac8I GCNNGC 6 cut(s) 76, 87, 128, 175, 652, 745
CfoI GCGC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 321
Cfr9I CCCGGG 1 cut(s) 574
Csp6I GTAC 1 cut(s) 451
CviAII CATG 4 cut(s) 67, 154, 232, 475
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 362, 435, 668
DpnI GATC 4 cut(s) 254, 465, 585, 698
DpnII GATC 4 cut(s) 252, 463, 583, 696
DraIII CACNNNGTG 1 cut(s) 527
EaeI YGGCCR 2 cut(s) 69, 128
Eam1104I CTCTTC 2 cut(s) 498, 785
EarI CTCTTC 2 cut(s) 498, 785
EciI GGCGGA 1 cut(s) 773
Eco147I AGGCCT 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 479
Eco81I CCTNAGG 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 321
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 4 cut(s) 70, 157, 235, 478
FaqI GGGAC 2 cut(s) 380, 400
FatI CATG 4 cut(s) 66, 153, 231, 474
FauNDI CATATG 1 cut(s) 80
FbaI TGATCA 2 cut(s) 463, 583
Fnu4HI GCNGC 5 cut(s) 72, 158, 237, 263, 787
FokI GGATG 4 cut(s) 44, 98, 233, 516
Fsp4HI GCNGC 5 cut(s) 72, 158, 237, 263, 787
GlaI GCGC 1 cut(s) 55
GluI GCNGC 5 cut(s) 72, 158, 237, 263, 787
HaeIII GGCC 5 cut(s) 71, 130, 292, 323, 654
HapII CCGG 2 cut(s) 384, 575
HhaI GCGC 1 cut(s) 56
Hin1II CATG 4 cut(s) 70, 157, 235, 478
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 2 cut(s) 380, 419
HpaII CCGG 2 cut(s) 384, 575
Hpy166II GTNNAC 3 cut(s) 512, 544, 571
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 4 cut(s) 250, 501, 587, 757
Hpy8I GTNNAC 3 cut(s) 512, 544, 571
HpyAV CCTTC 2 cut(s) 678, 763
HpyCH4III ACNGT 2 cut(s) 283, 525
HpyCH4V TGCA 7 cut(s) 26, 111, 231, 636, 645, 747, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 445, 633, 642, 651, 749
HpyF3I CTNAG 3 cut(s) 362, 435, 668
Hsp92II CATG 4 cut(s) 70, 157, 235, 478
HspAI GCGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 463, 583
Kzo9I GATC 4 cut(s) 252, 463, 583, 696
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 3 cut(s) 144, 248, 249
LweI GCATC 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 283, 373
MalI GATC 4 cut(s) 254, 465, 585, 698
MboI GATC 4 cut(s) 252, 463, 583, 696
MboII GAAGA 6 cut(s) 262, 409, 463, 485, 772, 785
MhlI GDGCHC 2 cut(s) 151, 723
MlsI TGGCCA 1 cut(s) 130
MluCI AATT 3 cut(s) 27, 34, 637
MluNI TGGCCA 1 cut(s) 130
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 542
MnlI CCTC 7 cut(s) 56, 59, 100, 251, 501, 525, 663
Mox20I TGGCCA 1 cut(s) 130
MroXI GAANNNNTTC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 130
MseI TTAA 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 130
MspI CCGG 2 cut(s) 384, 575
MspR9I CCNGG 4 cut(s) 315, 385, 575, 576
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 445, 633, 642, 651, 749
NciI CCSGG 3 cut(s) 385, 575, 576
NdeI CATATG 1 cut(s) 80
NdeII GATC 4 cut(s) 252, 463, 583, 696
NlaIII CATG 4 cut(s) 70, 157, 235, 478
NlaIV GGNNCC 2 cut(s) 187, 665
NmuCI GTSAC 1 cut(s) 373
PceI AGGCCT 1 cut(s) 292
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 1 cut(s) 419
PflFI GACNNNGTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 5 cut(s) 73, 159, 238, 264, 788
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 187, 665
PspPI GGNCC 1 cut(s) 321
PstI CTGCAG 1 cut(s) 749
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 5 cut(s) 72, 158, 237, 263, 787
Sau3AI GATC 4 cut(s) 252, 463, 583, 696
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 4 cut(s) 315, 385, 575, 576
SduI GDGCHC 2 cut(s) 151, 723
SetI ASST 6 cut(s) 225, 305, 441, 517, 583, 669
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 2 cut(s) 325, 745
SmaI CCCGGG 1 cut(s) 576
Sse9I AATT 3 cut(s) 27, 34, 637
SseBI AGGCCT 1 cut(s) 292
SsiI CCGC 3 cut(s) 72, 784, 787
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 4 cut(s) 313, 383, 573, 574
TaaI ACNGT 2 cut(s) 283, 525
TasI AATT 3 cut(s) 27, 34, 637
TatI WGTACW 1 cut(s) 450
TauI GCSGC 2 cut(s) 74, 789
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 4 cut(s) 286, 528, 717, 754
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 157, 236, 262
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 28, 463
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 574
TspRI CASTG 4 cut(s) 286, 528, 717, 754
Tth111I GACNNNGTC 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmaI CCCGGG 1 cut(s) 574
XmnI GAANNNNTTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.