RLG00000016369

Belongs to the tetraspanin (TM4SF) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016071
Physical Location & Seq
Forward (+)
5949902 .. 5951802
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016369

Sequence Viewer

Length: 843 bp
ATGGGAGTGAGCAACAAAATCACGGCAGTCCTCAACTTCACGGCGCTCCTCTGCTCCATCCCCATAATGGCCGCCGGCATCTGGCTGGCCAACAAGCCCGACAACGAGTGCATCCGCTCTTTCCGGTGGCCAATTTTCGTCCTCGGCGTCCTCATCCTCCTAGTCTCCCTCGCCGGCTTCATCGGCGCTTACTTCAACAAACAGGGCCTTCTTGCTCTCTACCTCTTCTGTATGGCCGCCCTCATAATCCTGCTACTTGTTGTGCTCATATTTGCTTTTACTGTCACGAGACCCGACGGAAGCTACGGCGTTCCGGGTAGGGCTTACCGGGAGTACCGGCTGGACGGGTTTTCTAAGTGGCTTAGGGATTACGTTACTGATTCCGATAACTGGCAGAAGATAAGGGTCTGTTTGGCTGAATCGGATACTTGTCCTAACCTCACTCAGAATTACATCACTGCTGATCAGTTCTTTGCGGCTCACATCTCTCCTCTTCAGTCAGGATGCTGTAAACCTCCAACAGCTTGTGGCTACAACTATGTGAACCCAAATCTGTGGATAAACCCAGTAAACCCTTCAGCAGATCCAGATTGTTTGCTGTGGAACAATGACCAGAACATACTGTGCTACAATTGCAACTCTTGCAGGGCTGGTTTACTGGGGAACTTGAGAAAAGAATGGAGAAGAGCCAATGTGATCCTCATTGTGGCGGTGGTGATTCTCATCTGGGTCTATGTCATTGCCTGCAGCGCCTTCAAGAATGCGCAAACGGAGGAGCTCTTCCGCCGTTACAAGCAGGGATGGGTGAATGGATGGACGCATAGACAGAAAGTGGAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tetraspannin

Protein Analysis

281

Amino Acids

31.65

Weight (kDa)

8.77

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tetraspanin PF00335 5 - 250 8.6e-36 Tetraspanin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19580
fragaria_vesca FvH4_1g07210 FvH4_1g07210
malus_domestica MD02G1076600.v1.1 MD15G1205300.v1.1
prunus_persica Prupe.7G211800_v2.0.a1
pyrus_communis pycom02g06090
rosa_laevigata RLG00000016369
rosa_multiflora Rmu_sc0006865.1_g000011
rosa_roxburghii Rroxscaffold_2G00148500
rosa_rugosa Rorug02G0032900
rosa_samantha Rh2AG078400 Rh2CG082000 Rh2DG077300
rosa_wichuraiana Rw2G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 765
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 6 cut(s) 72, 115, 237, 476, 710, 784
AclWI GGATC 2 cut(s) 578, 691
AcoI YGGCCR 4 cut(s) 69, 87, 128, 234
AcuI CTGAAG 2 cut(s) 479, 561
AcyI GRCGYC 1 cut(s) 147
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 4 cut(s) 67, 81, 390, 706
AgsI TTSAA 2 cut(s) 196, 757
AluBI AGCT 3 cut(s) 303, 524, 778
AluI AGCT 3 cut(s) 303, 524, 778
Alw21I GWGCWC 2 cut(s) 267, 780
Alw26I GTCTC 2 cut(s) 169, 283
AlwI GGATC 2 cut(s) 578, 691
AoxI GGCC 5 cut(s) 69, 87, 128, 205, 234
ApeKI GCWGC 1 cut(s) 747
AspLEI GCGC 4 cut(s) 46, 188, 752, 766
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 2 cut(s) 315, 329
AsuHPI GGTGA 2 cut(s) 727, 817
BalI TGGCCA 2 cut(s) 89, 130
BanII GRGCYC 1 cut(s) 780
BauI CACGAG 1 cut(s) 286
Bbv12I GWGCWC 2 cut(s) 267, 780
BbvI GCAGC 1 cut(s) 759
BccI CCATC 3 cut(s) 65, 795, 807
BceAI ACGGC 4 cut(s) 39, 57, 322, 771
BciVI GTATCC 1 cut(s) 418
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 2 cut(s) 315, 329
BcoDI GTCTC 2 cut(s) 169, 283
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 745
BfoI RGCGCY 3 cut(s) 47, 189, 753
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 4 cut(s) 72, 237, 477, 748
BlsI GCNGC 4 cut(s) 73, 238, 478, 749
Bme1390I CCNGG 2 cut(s) 315, 329
BmgT120I GGNCC 1 cut(s) 205
BmrFI CCNGG 2 cut(s) 315, 329
BmrI ACTGGG 2 cut(s) 560, 668
BmsI GCATC 3 cut(s) 87, 120, 494
BmuI ACTGGG 2 cut(s) 560, 668
Bpu10I CCTNAGC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 688
BpuMI CCSGG 2 cut(s) 315, 329
BsaBI GATNNNNATC 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 142
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 81, 390, 706
Bse118I RCCGGY 3 cut(s) 74, 173, 336
Bse1I ACTGG 3 cut(s) 395, 566, 663
Bse3DI GCAATG 1 cut(s) 738
Bse8I GATNNNNATC 1 cut(s) 722
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 6 cut(s) 57, 111, 153, 509, 806, 818
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 4 cut(s) 67, 81, 390, 706
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 3 cut(s) 395, 566, 663
BseRI GAGGAG 3 cut(s) 38, 480, 788
BseXI GCAGC 1 cut(s) 759
BshFI GGCC 5 cut(s) 71, 89, 130, 207, 236
BsiHKAI GWGCWC 2 cut(s) 267, 780
BsiSI CCGG 6 cut(s) 75, 124, 174, 314, 328, 337
BslI CCNNNNNNNGG 4 cut(s) 67, 81, 390, 706
BsmAI GTCTC 2 cut(s) 169, 283
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 5 cut(s) 71, 89, 130, 207, 236
Bso31I GGTCTC 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 267, 780
Bsp143I GATC 3 cut(s) 463, 583, 696
BspACI CCGC 6 cut(s) 72, 115, 237, 476, 710, 784
BspANI GGCC 5 cut(s) 71, 89, 130, 207, 236
BspCNI CTCAG 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 749
BspPI GGATC 2 cut(s) 578, 691
BspQI GCTCTTC 2 cut(s) 679, 785
BspTNI GGTCTC 1 cut(s) 283
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 3 cut(s) 74, 173, 336
BsrI ACTGG 3 cut(s) 395, 566, 663
BssAI RCCGGY 3 cut(s) 74, 173, 336
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 3 cut(s) 463, 583, 696
BssNI GRCGYC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 286
Bst2BI CACGAG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 283, 624
Bst6I CTCTTC 4 cut(s) 230, 498, 679, 785
BstACI GRCGYC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 642
BstC8I GCNNGC 4 cut(s) 76, 87, 175, 745
BstDEI CTNAG 3 cut(s) 354, 362, 444
BstF5I GGATG 6 cut(s) 57, 111, 153, 509, 806, 818
BstH2I RGCGCY 3 cut(s) 47, 189, 753
BstHHI GCGC 4 cut(s) 46, 188, 752, 766
BstKTI GATC 3 cut(s) 466, 586, 699
BstMAI GTCTC 2 cut(s) 169, 283
BstMBI GATC 3 cut(s) 463, 583, 696
BstMWI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
BstSCI CCNGG 2 cut(s) 313, 327
BstSFI CTRYAG 1 cut(s) 745
BstV1I GCAGC 1 cut(s) 759
BstX2I RGATCY 1 cut(s) 583
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 1 cut(s) 583
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 5 cut(s) 71, 89, 130, 207, 236
BtsCI GGATG 6 cut(s) 57, 111, 153, 509, 806, 818
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 4 cut(s) 76, 87, 175, 745
CfoI GCGC 4 cut(s) 46, 188, 752, 766
Cfr10I RCCGGY 3 cut(s) 74, 173, 336
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 2 cut(s) 136, 826
Csp6I GTAC 1 cut(s) 334
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 3 cut(s) 354, 362, 444
DpnI GATC 3 cut(s) 465, 585, 698
DpnII GATC 3 cut(s) 463, 583, 696
EaeI YGGCCR 4 cut(s) 69, 87, 128, 234
Eam1104I CTCTTC 4 cut(s) 230, 498, 679, 785
EarI CTCTTC 4 cut(s) 230, 498, 679, 785
EciI GGCGGA 1 cut(s) 773
Ecl136II GAGCTC 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 780
Eco31I GGTCTC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 479, 561
EcoICRI GAGCTC 1 cut(s) 778
EcoO109I RGGNCCY 1 cut(s) 205
EcoT38I GRGCYC 1 cut(s) 780
FaiI YATR 8 cut(s) 65, 233, 245, 269, 540, 620, 735, 822
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 72, 237, 477, 748
FokI GGATG 6 cut(s) 44, 98, 140, 516, 813, 825
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 4 cut(s) 72, 237, 477, 748
FspBI CTAG 1 cut(s) 161
FspI TGCGCA 1 cut(s) 765
GlaI GCGC 4 cut(s) 45, 187, 751, 765
GluI GCNGC 4 cut(s) 72, 237, 477, 748
HaeII RGCGCY 3 cut(s) 47, 189, 753
HaeIII GGCC 5 cut(s) 71, 89, 130, 207, 236
HapII CCGG 6 cut(s) 75, 124, 174, 314, 328, 337
HgaI GACGC 2 cut(s) 136, 826
HhaI GCGC 4 cut(s) 46, 188, 752, 766
Hin1I GRCGYC 1 cut(s) 147
Hin6I GCGC 4 cut(s) 44, 186, 750, 764
HinP1I GCGC 4 cut(s) 44, 186, 750, 764
HinfI GANTC 3 cut(s) 380, 419, 718
HpaII CCGG 6 cut(s) 75, 124, 174, 314, 328, 337
HphI GGTGA 2 cut(s) 727, 817
Hpy166II GTNNAC 4 cut(s) 512, 544, 571, 656
Hpy188I TCNGA 4 cut(s) 385, 424, 447, 842
Hpy188III TCNNGA 4 cut(s) 286, 501, 587, 757
Hpy8I GTNNAC 4 cut(s) 512, 544, 571, 656
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 218, 585, 763
HpyCH4III ACNGT 2 cut(s) 283, 624
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 4 cut(s) 111, 636, 645, 747
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
HpyF3I CTNAG 3 cut(s) 354, 362, 444
HpySE526I ACGT 1 cut(s) 372
Hsp92I GRCGYC 1 cut(s) 147
HspAI GCGC 4 cut(s) 44, 186, 750, 764
KroI GCCGGC 2 cut(s) 74, 173
KroNI GCCGGC 2 cut(s) 76, 175
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 463, 583, 696
LguI GCTCTTC 2 cut(s) 679, 785
LmnI GCTCC 3 cut(s) 51, 59, 775
Lsp1109I GCAGC 1 cut(s) 759
LweI GCATC 3 cut(s) 87, 120, 494
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 3 cut(s) 283, 373, 788
MalI GATC 3 cut(s) 465, 585, 698
MbiI CCGCTC 1 cut(s) 117
MboI GATC 3 cut(s) 463, 583, 696
MboII GAAGA 5 cut(s) 217, 409, 485, 696, 772
MfeI CAATTG 1 cut(s) 631
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 2 cut(s) 267, 780
MlsI TGGCCA 2 cut(s) 89, 130
MluCI AATT 3 cut(s) 132, 448, 631
MluNI TGGCCA 2 cut(s) 89, 130
MmeI TCCRAC 1 cut(s) 542
Mox20I TGGCCA 2 cut(s) 89, 130
MroNI GCCGGC 2 cut(s) 74, 173
MscI TGGCCA 2 cut(s) 89, 130
Msp20I TGGCCA 2 cut(s) 89, 130
MspI CCGG 6 cut(s) 75, 124, 174, 314, 328, 337
MspR9I CCNGG 2 cut(s) 315, 329
MunI CAATTG 1 cut(s) 631
Mva1269I GAATGC 1 cut(s) 766
MwoI GCNNNNNNNGC 4 cut(s) 183, 633, 642, 749
NaeI GCCGGC 2 cut(s) 76, 175
NciI CCSGG 2 cut(s) 315, 329
NdeII GATC 3 cut(s) 463, 583, 696
NgoMIV GCCGGC 2 cut(s) 74, 173
NmeAIII GCCGAG 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 283
NsbI TGCGCA 1 cut(s) 765
PciSI GCTCTTC 2 cut(s) 679, 785
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 766
PdiI GCCGGC 2 cut(s) 76, 175
PfeI GAWTC 3 cut(s) 380, 419, 718
PkrI GCNGC 4 cut(s) 73, 238, 478, 749
Psp124BI GAGCTC 1 cut(s) 780
PspPI GGNCC 1 cut(s) 205
PstI CTGCAG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacI GAGCTC 1 cut(s) 780
SapI GCTCTTC 2 cut(s) 679, 785
SatI GCNGC 4 cut(s) 72, 237, 477, 748
Sau3AI GATC 3 cut(s) 463, 583, 696
Sau96I GGNCC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 315, 329
SduI GDGCHC 2 cut(s) 267, 780
SetI ASST 7 cut(s) 225, 305, 375, 441, 517, 526, 780
SfaNI GCATC 3 cut(s) 87, 120, 494
SfcI CTRYAG 1 cut(s) 745
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 3 cut(s) 132, 448, 631
SsiI CCGC 6 cut(s) 72, 115, 237, 476, 710, 784
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 313, 327
TaaI ACNGT 2 cut(s) 283, 624
TaiI ACGT 1 cut(s) 375
TasI AATT 3 cut(s) 132, 448, 631
TauI GCSGC 3 cut(s) 74, 239, 479
TfiI GAWTC 3 cut(s) 380, 419, 718
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 747
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 169
TspGWI ACGGA 2 cut(s) 312, 785
TspRI CASTG 1 cut(s) 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.