AT2G20570
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006201
Physical Location & Seq
Forward (+)
8855302 .. 8857758
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20570.2

Sequence Viewer

Length: 1263 bp
ATGTTAGCTCTGTCTCCGGCGACAAGAGATGGTTGCGACGGAGCGTCAGAGTTTCTTGATACGTCGTGTGGATTCACGATTATAAACCCGGAGGAGGAGGAGGAGTTTCCGGATTTCGCTGACCACGGTGATCTTCTTGACATCATTGACTTCGACGATATATTCGGTGTGGCCGGAGATGTGCTTCCTGACTTGGAGATCGACCCTGAGATCTTATCCGGGGATTTCTCCAATCACATGAACGCTTCTTCAACGATTACTACGACGTCGGATAAGACTGATAGTCAAGGGGAGACTACTAAGGGTAGTTCGGGGAAAGGTGAAGAAGTCGTAAGCAAAAGAGACGATGTTGCGGCGGAGACGGTGACTTATGACGGTGACAGTGACCGGAAAAGGAAGTATTCCTCTTCAGCTTCTTCCAAGAACAATCGGATCAGTAACAACGAAGGGAAGAGAAAGGTGAAGGTGGATTGGACACCAGAGCTACACAGGAGATTCGTGGAGGCAGTGGAACAGTTAGGAGTGGACAAAGCTGTTCCTTCTCGAATTCTGGAGCTTATGGGAGTCCATTGTCTCACTCGTCACAACGTTGCTAGTCACCTCCAAAAATATAGGTCTCATCGGAAACATTTGCTAGCTCGTGAGGCCGAAGCGGCTAATTGGACACGCAAAAGGCATATCTATGGAGTAGACACCGGTGCTAATCTTAATGGTCGGACTAAAAATGGATGGCTTGCACCGGCACCCACTCTCGGGTTTCCACCACCACCACCCGTGGCTGTTGCACCGCCACCTGTCCACCACCATCATTTTAGGCCCCTGCATGTGTGGGGACATCCCACGGTTGATCAGTCCATTATGCCGCATGTGTGGCCCAAACACTTACCTCCGCCTTCTACCGCCATGCCTAATCCGCCGTTTTGGGTCTCCGATTCTCCCTATTGGCATCCAATGCATAACGGGACGACTCCGTATTTACCGACCGTAGCTACGAGATTTAGAGCACCGCCAGTTGCCGGAATCCCGCATGCTCTGCCGCCGCATCACACGATGTACAAACCAAATCTTGGATTTGGTGGTGCTCGTCCTCCGGTAGACTTACATCCGTCAAAAGAGAGCGTGGATGCAGCCATAGGAGATGTATTGACGAGGCCATGGCTGCCACTTCCGTTGGGATTAAATCCGCCGGCTGTTGACGGTGTTATGACAGAGCTTCACCGTCACGGTGTCTCTGAGGTTCCTCCGACCGCGTCTTGTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0048519 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:1900055 GO:1900056 GO:1905622 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

420

Amino Acids

45.99

Weight (kDa)

6.06

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 171 - 221 1.8e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
AatII GACGTC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccI GTMKAC 2 cut(s) 690, 1095
AccII CGCG 1 cut(s) 1250
AccIII TCCGGA 1 cut(s) 109
AclI AACGTT 1 cut(s) 588
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 171
AcsI RAATTY 1 cut(s) 546
AcuI CTGAAG 1 cut(s) 393
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 1 cut(s) 1055
AfiI CCNNNNNNNGG 5 cut(s) 94, 752, 753, 1016, 1067
AgeI ACCGGT 1 cut(s) 695
AgsI TTSAA 1 cut(s) 252
AhdI GACNNNNNGTC 2 cut(s) 43, 282
AluBI AGCT 8 cut(s) 8, 413, 484, 533, 556, 638, 989, 1213
AluI AGCT 8 cut(s) 8, 413, 484, 533, 556, 638, 989, 1213
Alw21I GWGCWC 2 cut(s) 1006, 1084
Alw26I GTCTC 8 cut(s) 18, 287, 336, 353, 578, 621, 931, 1234
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 1 cut(s) 752
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 5 cut(s) 171, 645, 815, 872, 1151
ApeKI GCWGC 2 cut(s) 1127, 1159
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AsiGI ACCGGT 1 cut(s) 695
AspS9I GGNCC 2 cut(s) 816, 873
AsuC2I CCSGG 2 cut(s) 89, 220
AsuHPI GGTGA 7 cut(s) 140, 332, 376, 389, 472, 590, 1208
AsuNHI GCTAGC 1 cut(s) 634
AvaI CYCGRG 1 cut(s) 752
BanI GGYRCC 1 cut(s) 742
BauI CACGAG 1 cut(s) 639
Bbv12I GWGCWC 2 cut(s) 1006, 1084
BbvI GCAGC 2 cut(s) 1139, 1146
BccI CCATC 3 cut(s) 23, 723, 813
BceAI ACGGC 1 cut(s) 901
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 2 cut(s) 89, 220
BcoDI GTCTC 8 cut(s) 18, 287, 336, 353, 578, 621, 931, 1234
BfaI CTAG 2 cut(s) 594, 635
BglI GCCNNNNNGGC 1 cut(s) 653
BglII AGATCT 1 cut(s) 210
BisI GCNGC 7 cut(s) 354, 654, 863, 1037, 1040, 1128, 1160
BlsI GCNGC 7 cut(s) 355, 655, 864, 1038, 1041, 1129, 1161
Bme1390I CCNGG 2 cut(s) 89, 220
BmeRI GACNNNNNGTC 2 cut(s) 43, 282
BmeT110I CYCGRG 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 816, 873
BmiI GGNNCC 3 cut(s) 744, 818, 1239
BmrFI CCNGG 2 cut(s) 89, 220
BmsI GCATC 3 cut(s) 955, 1051, 1114
BmtI GCTAGC 1 cut(s) 638
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 89, 220
BsaHI GRCGYC 1 cut(s) 266
BsaI GGTCTC 2 cut(s) 621, 931
BsaJI CCNNGG 5 cut(s) 124, 219, 774, 840, 1154
BsaWI WCCGGW 4 cut(s) 109, 387, 695, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 752, 753, 1016, 1067
Bse118I RCCGGY 3 cut(s) 695, 739, 1186
Bse1I ACTGG 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 109
BseDI CCNNGG 5 cut(s) 124, 219, 774, 840, 1154
BseGI GGATG 5 cut(s) 734, 835, 946, 1102, 1129
BseLI CCNNNNNNNGG 5 cut(s) 94, 752, 753, 1016, 1067
BseMII CTCAG 2 cut(s) 198, 1224
BseNI ACTGG 1 cut(s) 1010
BseRI GAGGAG 4 cut(s) 107, 110, 113, 116
BseXI GCAGC 2 cut(s) 1139, 1146
Bsh1236I CGCG 1 cut(s) 1250
Bsh1285I CGRYCG 2 cut(s) 984, 1248
BshFI GGCC 5 cut(s) 173, 647, 817, 874, 1153
BshNI GGYRCC 1 cut(s) 742
BshTI ACCGGT 1 cut(s) 695
BsiEI CGRYCG 2 cut(s) 984, 1248
BsiHKAI GWGCWC 2 cut(s) 1006, 1084
BsiHKCI CYCGRG 1 cut(s) 752
BslFI GGGAC 2 cut(s) 846, 976
BslI CCNNNNNNNGG 5 cut(s) 94, 752, 753, 1016, 1067
BsmAI GTCTC 8 cut(s) 18, 287, 336, 353, 578, 621, 931, 1234
BsmBI CGTCTC 2 cut(s) 336, 353
BsmFI GGGAC 2 cut(s) 846, 976
BsnI GGCC 5 cut(s) 173, 647, 817, 874, 1153
Bso31I GGTCTC 2 cut(s) 621, 931
BsoBI CYCGRG 1 cut(s) 752
Bsp1286I GDGCHC 2 cut(s) 1006, 1084
Bsp13I TCCGGA 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 1053
Bsp143I GATC 5 cut(s) 130, 198, 210, 432, 847
Bsp19I CCATGG 1 cut(s) 1154
BspANI GGCC 5 cut(s) 173, 647, 817, 874, 1153
BspCNI CTCAG 2 cut(s) 199, 1225
BspEI TCCGGA 1 cut(s) 109
BspFNI CGCG 1 cut(s) 1250
BspLI GGNNCC 3 cut(s) 744, 818, 1239
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 742
BspTNI GGTCTC 2 cut(s) 621, 931
BsrFI RCCGGY 3 cut(s) 695, 739, 1186
BsrGI TGTACA 1 cut(s) 1053
BsrI ACTGG 1 cut(s) 1010
BssAI RCCGGY 3 cut(s) 695, 739, 1186
BssECI CCNNGG 5 cut(s) 124, 219, 774, 840, 1154
BssMI GATC 5 cut(s) 130, 198, 210, 432, 847
BssNI GRCGYC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 1154
Bst2BI CACGAG 1 cut(s) 639
Bst6I CTCTTC 2 cut(s) 412, 446
BstACI GRCGYC 1 cut(s) 266
BstAPI GCANNNNNTGC 2 cut(s) 952, 1033
BstAUI TGTACA 1 cut(s) 1053
BstC8I GCNNGC 4 cut(s) 636, 735, 1029, 1188
BstDEI CTNAG 3 cut(s) 207, 300, 1233
BstDSI CCRYGG 4 cut(s) 124, 774, 840, 1154
BstF5I GGATG 5 cut(s) 734, 835, 946, 1102, 1129
BstFNI CGCG 1 cut(s) 1250
BstKTI GATC 5 cut(s) 133, 201, 213, 435, 850
BstMAI GTCTC 8 cut(s) 18, 287, 336, 353, 578, 621, 931, 1234
BstMBI GATC 5 cut(s) 130, 198, 210, 432, 847
BstMCI CGRYCG 2 cut(s) 984, 1248
BstMWI GCNNNNNNNGC 8 cut(s) 644, 653, 871, 913, 952, 1033, 1159, 1256
BstNSI RCATGY 3 cut(s) 827, 869, 1031
BstSCI CCNGG 2 cut(s) 87, 218
BstUI CGCG 1 cut(s) 1250
BstV1I GCAGC 2 cut(s) 1139, 1146
BstX2I RGATCY 1 cut(s) 210
BstYI RGATCY 1 cut(s) 210
BsuRI GGCC 5 cut(s) 173, 647, 817, 874, 1153
BtgI CCRYGG 4 cut(s) 124, 774, 840, 1154
BtsCI GGATG 5 cut(s) 734, 835, 946, 1102, 1129
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 388, 513
Cac8I GCNNGC 4 cut(s) 636, 735, 1029, 1188
Cfr10I RCCGGY 3 cut(s) 695, 739, 1186
Cfr13I GGNCC 2 cut(s) 816, 873
CseI GACGC 2 cut(s) 33, 1239
Csp6I GTAC 1 cut(s) 1054
CspAI ACCGGT 1 cut(s) 695
CspCI CAANNNNNGTGG 2 cut(s) 1152, 1187
CviAII CATG 6 cut(s) 238, 824, 866, 904, 1028, 1155
CviQI GTAC 1 cut(s) 1054
DdeI CTNAG 3 cut(s) 207, 300, 1233
DpnI GATC 5 cut(s) 132, 200, 212, 434, 849
DpnII GATC 5 cut(s) 130, 198, 210, 432, 847
DriI GACNNNNNGTC 2 cut(s) 43, 282
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 412, 446
Eam1105I GACNNNNNGTC 2 cut(s) 43, 282
EarI CTCTTC 2 cut(s) 412, 446
EciI GGCGGA 4 cut(s) 371, 879, 903, 1173
Eco130I CCWWGG 1 cut(s) 1154
Eco31I GGTCTC 2 cut(s) 621, 931
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 1154
EcoT22I ATGCAT 1 cut(s) 957
ErhI CCWWGG 1 cut(s) 1154
Esp3I CGTCTC 2 cut(s) 336, 353
FaeI CATG 6 cut(s) 241, 827, 869, 907, 1031, 1158
FaqI GGGAC 2 cut(s) 846, 976
FatI CATG 6 cut(s) 237, 823, 865, 903, 1027, 1154
FauI CCCGC 1 cut(s) 1032
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 2 cut(s) 690, 1095
Fnu4HI GCNGC 7 cut(s) 354, 654, 863, 1037, 1040, 1128, 1160
FokI GGATG 5 cut(s) 741, 822, 933, 1089, 1136
Fsp4HI GCNGC 7 cut(s) 354, 654, 863, 1037, 1040, 1128, 1160
FspBI CTAG 2 cut(s) 594, 635
GluI GCNGC 7 cut(s) 354, 654, 863, 1037, 1040, 1128, 1160
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 5 cut(s) 173, 647, 817, 874, 1153
HgaI GACGC 2 cut(s) 33, 1239
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 6 cut(s) 241, 827, 869, 907, 1031, 1158
HincII GTYRAC 1 cut(s) 1195
HindII GTYRAC 1 cut(s) 1195
HinfI GANTC 6 cut(s) 72, 495, 564, 932, 967, 1020
HphI GGTGA 7 cut(s) 140, 332, 376, 389, 472, 590, 1208
Hpy166II GTNNAC 5 cut(s) 526, 691, 799, 1096, 1195
Hpy188I TCNGA 8 cut(s) 49, 271, 432, 624, 717, 931, 1234, 1245
Hpy188III TCNNGA 8 cut(s) 56, 76, 110, 137, 188, 543, 551, 641
Hpy8I GTNNAC 5 cut(s) 526, 691, 799, 1096, 1195
Hpy99I CGWCG 5 cut(s) 41, 67, 158, 268, 271
HpyAV CCTTC 4 cut(s) 440, 457, 549, 903
HpyCH4IV ACGT 3 cut(s) 62, 266, 588
HpyCH4V TGCA 5 cut(s) 737, 785, 823, 955, 1127
HpyF10VI GCNNNNNNNGC 8 cut(s) 644, 653, 871, 913, 952, 1033, 1159, 1256
HpyF3I CTNAG 3 cut(s) 207, 300, 1233
HpySE526I ACGT 3 cut(s) 62, 266, 588
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 6 cut(s) 241, 827, 869, 907, 1031, 1158
Kpn2I TCCGGA 1 cut(s) 109
KroI GCCGGC 1 cut(s) 1186
KroNI GCCGGC 1 cut(s) 1188
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 130, 198, 210, 432, 847
LmnI GCTCC 2 cut(s) 41, 553
Lsp1109I GCAGC 2 cut(s) 1139, 1146
LweI GCATC 3 cut(s) 955, 1051, 1114
MaeI CTAG 2 cut(s) 594, 635
MaeII ACGT 3 cut(s) 62, 266, 588
MaeIII GTNAC 7 cut(s) 364, 377, 383, 437, 581, 596, 1220
MalI GATC 5 cut(s) 132, 200, 212, 434, 849
MboI GATC 5 cut(s) 130, 198, 210, 432, 847
MboII GAAGA 6 cut(s) 125, 240, 335, 399, 408, 463
MflI RGATCY 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 1006, 1084
MluCI AATT 2 cut(s) 546, 658
MlyI GAGTC 2 cut(s) 573, 961
MmeI TCCRAC 2 cut(s) 249, 695
Mph1103I ATGCAT 1 cut(s) 957
MroI TCCGGA 1 cut(s) 109
MroNI GCCGGC 1 cut(s) 1186
MseI TTAA 2 cut(s) 708, 1178
MslI CAYNNNNRTG 1 cut(s) 681
MspR9I CCNGG 2 cut(s) 89, 220
MvnI CGCG 1 cut(s) 1250
MwoI GCNNNNNNNGC 8 cut(s) 644, 653, 871, 913, 952, 1033, 1159, 1256
NaeI GCCGGC 1 cut(s) 1188
NciI CCSGG 2 cut(s) 89, 220
NcoI CCATGG 1 cut(s) 1154
NdeII GATC 5 cut(s) 130, 198, 210, 432, 847
NgoMIV GCCGGC 1 cut(s) 1186
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 6 cut(s) 241, 827, 869, 907, 1031, 1158
NlaIV GGNNCC 3 cut(s) 744, 818, 1239
NmuCI GTSAC 6 cut(s) 364, 377, 383, 581, 596, 1220
NsiI ATGCAT 1 cut(s) 957
NspI RCATGY 3 cut(s) 827, 869, 1031
PaeI GCATGC 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 1188
PfeI GAWTC 4 cut(s) 72, 495, 932, 1020
PflFI GACNNNGTC 1 cut(s) 1249
PflMI CCANNNNNTGG 1 cut(s) 1067
PinAI ACCGGT 1 cut(s) 695
PkrI GCNGC 7 cut(s) 355, 655, 864, 1038, 1041, 1129, 1161
PleI GAGTC 2 cut(s) 572, 961
PpsI GAGTC 2 cut(s) 572, 961
PsiI TTATAA 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 744, 818, 1239
PspPI GGNCC 2 cut(s) 816, 873
PsuI RGATCY 1 cut(s) 210
PsyI GACNNNGTC 1 cut(s) 1249
RsaI GTAC 1 cut(s) 1055
RsaNI GTAC 1 cut(s) 1054
RseI CAYNNNNRTG 1 cut(s) 681
SaqAI TTAA 2 cut(s) 708, 1178
SatI GCNGC 7 cut(s) 354, 654, 863, 1037, 1040, 1128, 1160
Sau3AI GATC 5 cut(s) 130, 198, 210, 432, 847
Sau96I GGNCC 2 cut(s) 816, 873
SchI GAGTC 2 cut(s) 573, 961
ScrFI CCNGG 2 cut(s) 89, 220
SduI GDGCHC 2 cut(s) 1006, 1084
SfaNI GCATC 3 cut(s) 955, 1051, 1114
SgrAI CRCCGGYG 1 cut(s) 695
SmiMI CAYNNNNRTG 1 cut(s) 681
SphI GCATGC 1 cut(s) 1031
Sse9I AATT 2 cut(s) 546, 658
SspMI CTAG 2 cut(s) 594, 635
StyD4I CCNGG 2 cut(s) 87, 218
StyI CCWWGG 1 cut(s) 1154
TaiI ACGT 3 cut(s) 65, 269, 591
TaqI TCGA 3 cut(s) 153, 201, 544
TasI AATT 2 cut(s) 546, 658
TatI WGTACW 1 cut(s) 1053
TauI GCSGC 5 cut(s) 356, 656, 865, 1039, 1042
TfiI GAWTC 4 cut(s) 72, 495, 932, 1020
Tru1I TTAA 2 cut(s) 708, 1178
Tru9I TTAA 2 cut(s) 708, 1178
TscAI CASTG 2 cut(s) 388, 513
TseFI GTSAC 6 cut(s) 364, 377, 383, 581, 596, 1220
TseI GCWGC 2 cut(s) 1127, 1159
Tsp45I GTSAC 6 cut(s) 364, 377, 383, 581, 596, 1220
TspDTI ATGAA 1 cut(s) 254
TspGWI ACGGA 4 cut(s) 54, 960, 1095, 1158
TspRI CASTG 2 cut(s) 388, 513
Tth111I GACNNNGTC 1 cut(s) 1249
Van91I CCANNNNNTGG 1 cut(s) 1067
XapI RAATTY 1 cut(s) 546
XceI RCATGY 3 cut(s) 827, 869, 1031
XmiI GTMKAC 2 cut(s) 690, 1095
XspI CTAG 2 cut(s) 594, 635
ZraI GACGTC 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.