AT5G44190
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
17798262 .. 17800926
2665 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44190.1

Sequence Viewer

Length: 1161 bp
ATGTTAACTGTTTCTCCGGCTCCAGTACTCATCGGAAACAACTCAAAGGATACTTACATGGCGGCAGATTTCGCAGATTTTACGACGGAAGACTTGCCGGACTTTACGACGGTCGGGGATTTTTCCGATGATCTTCTTGATGGAATCGATTACTACGACGATCTTTTCATTGGTTTCGATGGAGACGATGTTTTGCCGGATTTGGAGATAGATTCGGAGATTCTTGGGGAATATTCCGGTAGCGGAAGAGATGAGGAACAAGAAATGGAGGGTAACACTTCGACGGCATCGGAGACATCGGAGAGAGACGTTGGTGTGTGTAAGCAAGAGGGTGGTGGTGGTGGTGACGGTGGTTTTAGGGACAAAACGGTGCGTCGAGGCAAACGTAAAGGGAAGAAAAGTAAAGATTGTTTATCCGATGAGAACGATATTAAGAAAAAACCTAAGGTGGATTGGACGCCGGAGTTACACCGGAAATTTGTACAAGCGGTGGAGCAATTAGGGGTAGACAAGGCGGTGCCGTCTCGAATCTTGGAAATTATGAACGTTAAATCTCTCACTCGTCACAACGTTGCTAGCCATCTTCAGAAATATAGGTCACATCGGAAACATCTACTAGCGCGTGAAGCAGAAGCTGCCAGCTGGAATCTCCGGAGACATGCCACGGTGGCAGTGCCCGGAGTAGGAGGAGGAGGGAAGAAGCCGTGGACAGCTCCTGCCTTAGGCTATCCTCCACACGTGGCACCAATGCATCATGGTCACTTCAGGCCTTTGCACGTATGGGGTCATCCTACGTGGCCAAAACACAAGCCTAATACTCCGGCGTCTGCTCATCGGACGTATCCAATGCCGGCCATTGCGGCGGCTCCGGCATCTTGGCCAGGTCATCCACCGTACTGGCATCAGCAACCACTCTATCCACAGGGATATGGTATGGCATCATCGAATCATTCAAGCATCGGTGTTCCCACAAGACAATTAGGACCCACTAATCCTCCCATCGACATTCATCCCTCGAATGAGAGCATAGATGCAGCTATTGGGGACGTTATATCAAAGCCGTGGCTGCCGCTTCCTTTGGGACTGAAACCGCCGTCGGTTGACGGTGTTATGACGGAGTTACAACGTCAAGGAGTTTCTAATGTTCCTCCTCTTCCTTGA

Protein Analysis

386

Amino Acids

42.17

Weight (kDa)

6.13

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 149 - 199 3.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 517, 742
AccI GTMKAC 1 cut(s) 507
AccII CGCG 1 cut(s) 622
AccIII TCCGGA 1 cut(s) 651
AciI CCGC 8 cut(s) 62, 243, 488, 515, 860, 863, 1070, 1091
AclI AACGTT 2 cut(s) 546, 570
AcoI YGGCCR 3 cut(s) 797, 852, 878
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 2 cut(s) 569, 748
AcvI CACGTG 1 cut(s) 739
AcyI GRCGYC 2 cut(s) 458, 824
AfaI GTAC 3 cut(s) 27, 483, 896
AfiI CCNNNNNNNGG 2 cut(s) 683, 722
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 1 cut(s) 954
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 4 cut(s) 635, 642, 713, 1037
AluI AGCT 4 cut(s) 635, 642, 713, 1037
Alw26I GTCTC 5 cut(s) 177, 287, 300, 528, 649
AlwNI CAGNNNCTG 2 cut(s) 635, 716
Aor13HI TCCGGA 1 cut(s) 651
AoxI GGCC 4 cut(s) 767, 797, 852, 878
ApeKI GCWGC 3 cut(s) 635, 1034, 1066
ApoI RAATTY 1 cut(s) 476
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 1 cut(s) 983
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 356
AsuNHI GCTAGC 1 cut(s) 575
AvaII GGWCC 1 cut(s) 983
AxyI CCTNAGG 2 cut(s) 444, 721
BaeGI GKGCMC 1 cut(s) 678
BalI TGGCCA 2 cut(s) 799, 880
BanI GGYRCC 2 cut(s) 517, 742
BbrPI CACGTG 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 3 cut(s) 622, 1046, 1053
BccI CCATC 4 cut(s) 134, 173, 588, 1007
BceAI ACGGC 5 cut(s) 300, 505, 688, 1045, 1078
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 2 cut(s) 43, 852
BcnI CCSGG 1 cut(s) 678
BcoDI GTCTC 5 cut(s) 177, 287, 300, 528, 649
BfaI CTAG 2 cut(s) 576, 617
BfuI GTATCC 2 cut(s) 43, 852
BglI GCCNNNNNGGC 2 cut(s) 668, 860
BisI GCNGC 7 cut(s) 63, 636, 861, 864, 1035, 1067, 1070
BlsI GCNGC 7 cut(s) 64, 637, 862, 865, 1036, 1068, 1071
BmcAI AGTACT 1 cut(s) 27
Bme1390I CCNGG 2 cut(s) 678, 882
Bme18I GGWCC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 983
BmiI GGNNCC 5 cut(s) 21, 519, 744, 867, 985
BmrFI CCNGG 2 cut(s) 678, 882
BmsI GCATC 7 cut(s) 296, 760, 881, 910, 947, 966, 1021
BmtI GCTAGC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 678
Bsa29I ATCGAT 1 cut(s) 147
BsaAI YACGTR 3 cut(s) 739, 778, 795
BsaHI GRCGYC 2 cut(s) 458, 824
BsaJI CCNNGG 3 cut(s) 663, 704, 1061
BsaWI WCCGGW 3 cut(s) 236, 471, 651
BsaXI ACNNNNNCTCC 5 cut(s) 28, 174, 204, 979, 1009
Bsc4I CCNNNNNNNGG 2 cut(s) 683, 722
Bse118I RCCGGY 1 cut(s) 850
Bse1I ACTGG 2 cut(s) 23, 902
Bse21I CCTNAGG 2 cut(s) 444, 721
Bse3DI GCAATG 1 cut(s) 855
BseAI TCCGGA 1 cut(s) 651
BseBI CCWGG 1 cut(s) 882
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 663, 704, 1061
BseGI GGATG 3 cut(s) 787, 886, 1009
BseLI CCNNNNNNNGG 2 cut(s) 683, 722
BseMI GCAATG 1 cut(s) 855
BseNI ACTGG 2 cut(s) 23, 902
BseRI GAGGAG 3 cut(s) 702, 705, 1140
BseSI GKGCMC 1 cut(s) 678
BseXI GCAGC 3 cut(s) 622, 1046, 1053
Bsh1236I CGCG 1 cut(s) 622
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 4 cut(s) 769, 799, 854, 880
BshNI GGYRCC 2 cut(s) 517, 742
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 114
BslFI GGGAC 3 cut(s) 374, 1058, 1095
BslI CCNNNNNNNGG 2 cut(s) 683, 722
BsmAI GTCTC 5 cut(s) 177, 287, 300, 528, 649
BsmBI CGTCTC 3 cut(s) 177, 300, 528
BsmFI GGGAC 3 cut(s) 374, 1058, 1095
BsnI GGCC 4 cut(s) 769, 799, 854, 880
Bsp1286I GDGCHC 1 cut(s) 678
Bsp13I TCCGGA 1 cut(s) 651
Bsp1407I TGTACA 1 cut(s) 481
Bsp143I GATC 2 cut(s) 130, 160
BspACI CCGC 8 cut(s) 62, 243, 488, 515, 860, 863, 1070, 1091
BspANI GGCC 4 cut(s) 769, 799, 854, 880
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 651
BspFNI CGCG 1 cut(s) 622
BspLI GGNNCC 5 cut(s) 21, 519, 744, 867, 985
BspOI GCTAGC 1 cut(s) 579
BspT107I GGYRCC 2 cut(s) 517, 742
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 1 cut(s) 850
BsrGI TGTACA 1 cut(s) 481
BsrI ACTGG 2 cut(s) 23, 902
BssAI RCCGGY 1 cut(s) 850
BssECI CCNNGG 3 cut(s) 663, 704, 1061
BssMI GATC 2 cut(s) 130, 160
BssNI GRCGYC 2 cut(s) 458, 824
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 7 cut(s) 10, 112, 350, 370, 667, 894, 1106
Bst6I CTCTTC 2 cut(s) 241, 1158
BstACI GRCGYC 2 cut(s) 458, 824
BstAPI GCANNNNNTGC 1 cut(s) 635
BstAUI TGTACA 1 cut(s) 481
BstBAI YACGTR 3 cut(s) 739, 778, 795
BstC8I GCNNGC 3 cut(s) 577, 640, 852
BstDEI CTNAG 2 cut(s) 444, 721
BstDSI CCRYGG 3 cut(s) 663, 704, 1061
BstENI CCTNNNNNAGG 1 cut(s) 720
BstF5I GGATG 3 cut(s) 787, 886, 1009
BstFNI CGCG 1 cut(s) 622
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 2 cut(s) 133, 163
BstMAI GTCTC 5 cut(s) 177, 287, 300, 528, 649
BstMBI GATC 2 cut(s) 130, 160
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 7 cut(s) 71, 626, 635, 668, 860, 869, 1066
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 2 cut(s) 676, 880
BstSLI GKGCMC 1 cut(s) 678
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 3 cut(s) 622, 1046, 1053
BstV2I GAAGAC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 897
Bsu15I ATCGAT 1 cut(s) 147
Bsu36I CCTNAGG 2 cut(s) 444, 721
BsuI GTATCC 2 cut(s) 43, 852
BsuRI GGCC 4 cut(s) 769, 799, 854, 880
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 3 cut(s) 663, 704, 1061
BtsCI GGATG 3 cut(s) 787, 886, 1009
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 3 cut(s) 577, 640, 852
CaiI CAGNNNCTG 2 cut(s) 635, 716
CfoI GCGC 1 cut(s) 622
Cfr10I RCCGGY 1 cut(s) 850
Cfr13I GGNCC 1 cut(s) 983
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 3 cut(s) 362, 466, 813
Csp6I GTAC 3 cut(s) 26, 482, 895
CviAII CATG 3 cut(s) 58, 659, 755
CviQI GTAC 3 cut(s) 26, 482, 895
DdeI CTNAG 2 cut(s) 444, 721
DpnI GATC 2 cut(s) 132, 162
DpnII GATC 2 cut(s) 130, 160
EaeI YGGCCR 3 cut(s) 797, 852, 878
Eam1104I CTCTTC 2 cut(s) 241, 1158
EarI CTCTTC 2 cut(s) 241, 1158
Eco147I AGGCCT 1 cut(s) 769
Eco47I GGWCC 1 cut(s) 983
Eco57I CTGAAG 2 cut(s) 569, 748
Eco72I CACGTG 1 cut(s) 739
Eco81I CCTNAGG 2 cut(s) 444, 721
EcoNI CCTNNNNNAGG 1 cut(s) 720
EcoO109I RGGNCCY 1 cut(s) 983
EcoRII CCWGG 1 cut(s) 880
EcoT22I ATGCAT 1 cut(s) 753
Esp3I CGTCTC 3 cut(s) 177, 300, 528
FaeI CATG 3 cut(s) 61, 662, 758
FaqI GGGAC 3 cut(s) 374, 1058, 1095
FatI CATG 3 cut(s) 57, 658, 754
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 7 cut(s) 63, 636, 861, 864, 1035, 1067, 1070
FokI GGATG 3 cut(s) 774, 873, 996
Fsp4HI GCNGC 7 cut(s) 63, 636, 861, 864, 1035, 1067, 1070
FspBI CTAG 2 cut(s) 576, 617
GlaI GCGC 1 cut(s) 621
GluI GCNGC 7 cut(s) 63, 636, 861, 864, 1035, 1067, 1070
GsuI CTGGAG 1 cut(s) 6
HaeIII GGCC 4 cut(s) 769, 799, 854, 880
HgaI GACGC 3 cut(s) 362, 466, 813
HhaI GCGC 1 cut(s) 622
Hin1I GRCGYC 2 cut(s) 458, 824
Hin1II CATG 3 cut(s) 61, 662, 758
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HincII GTYRAC 2 cut(s) 6, 1102
HindII GTYRAC 2 cut(s) 6, 1102
HinfI GANTC 6 cut(s) 144, 212, 220, 528, 646, 946
HpaI GTTAAC 1 cut(s) 6
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 6, 508, 708, 1102
Hpy188I TCNGA 9 cut(s) 35, 127, 217, 292, 301, 418, 588, 606, 837
Hpy188III TCNNGA 3 cut(s) 137, 525, 652
Hpy8I GTNNAC 4 cut(s) 6, 508, 708, 1102
Hpy99I CGWCG 6 cut(s) 88, 112, 161, 286, 378, 1099
HpyCH4III ACNGT 7 cut(s) 10, 112, 350, 370, 667, 894, 1106
HpyCH4V TGCA 3 cut(s) 751, 775, 1034
HpyF10VI GCNNNNNNNGC 7 cut(s) 71, 626, 635, 668, 860, 869, 1066
HpyF3I CTNAG 2 cut(s) 444, 721
Hsp92I GRCGYC 2 cut(s) 458, 824
Hsp92II CATG 3 cut(s) 61, 662, 758
HspAI GCGC 1 cut(s) 620
Kpn2I TCCGGA 1 cut(s) 651
KroI GCCGGC 1 cut(s) 850
KroNI GCCGGC 1 cut(s) 852
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 2 cut(s) 130, 160
LmnI GCTCC 4 cut(s) 25, 493, 718, 871
Lsp1109I GCAGC 3 cut(s) 622, 1046, 1053
LweI GCATC 7 cut(s) 296, 760, 881, 910, 947, 966, 1021
MaeI CTAG 2 cut(s) 576, 617
MaeIII GTNAC 7 cut(s) 272, 344, 465, 563, 597, 758, 1119
MalI GATC 2 cut(s) 132, 162
MboI GATC 2 cut(s) 130, 160
MboII GAAGA 7 cut(s) 101, 125, 258, 406, 575, 709, 1145
MhlI GDGCHC 1 cut(s) 678
MlsI TGGCCA 2 cut(s) 799, 880
MluCI AATT 4 cut(s) 476, 497, 537, 977
MluNI TGGCCA 2 cut(s) 799, 880
Mox20I TGGCCA 2 cut(s) 799, 880
Mph1103I ATGCAT 1 cut(s) 753
MroI TCCGGA 1 cut(s) 651
MroNI GCCGGC 1 cut(s) 850
MscI TGGCCA 2 cut(s) 799, 880
MseI TTAA 3 cut(s) 5, 432, 549
Msp20I TGGCCA 2 cut(s) 799, 880
MspA1I CMGCKG 1 cut(s) 642
MspR9I CCNGG 2 cut(s) 678, 882
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 7 cut(s) 71, 626, 635, 668, 860, 869, 1066
NaeI GCCGGC 1 cut(s) 852
NciI CCSGG 1 cut(s) 678
NdeII GATC 2 cut(s) 130, 160
NgoMIV GCCGGC 1 cut(s) 850
NheI GCTAGC 1 cut(s) 575
NlaIII CATG 3 cut(s) 61, 662, 758
NlaIV GGNNCC 5 cut(s) 21, 519, 744, 867, 985
NmuCI GTSAC 4 cut(s) 344, 563, 597, 758
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 1 cut(s) 662
PceI AGGCCT 1 cut(s) 769
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 183, 382
PdiI GCCGGC 1 cut(s) 852
PfeI GAWTC 6 cut(s) 144, 212, 220, 528, 646, 946
PkrI GCNGC 7 cut(s) 64, 637, 862, 865, 1036, 1068, 1071
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
Ppu21I YACGTR 3 cut(s) 739, 778, 795
PpuMI RGGWCCY 1 cut(s) 983
Psp1406I AACGTT 2 cut(s) 546, 570
Psp5II RGGWCCY 1 cut(s) 983
Psp6I CCWGG 1 cut(s) 880
PspCI CACGTG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 5 cut(s) 21, 519, 744, 867, 985
PspPI GGNCC 1 cut(s) 983
PspPPI RGGWCCY 1 cut(s) 983
PstNI CAGNNNCTG 2 cut(s) 635, 716
PvuII CAGCTG 1 cut(s) 642
RsaI GTAC 3 cut(s) 27, 483, 896
RsaNI GTAC 3 cut(s) 26, 482, 895
SaqAI TTAA 3 cut(s) 5, 432, 549
SatI GCNGC 7 cut(s) 63, 636, 861, 864, 1035, 1067, 1070
Sau3AI GATC 2 cut(s) 130, 160
Sau96I GGNCC 1 cut(s) 983
ScaI AGTACT 1 cut(s) 27
ScrFI CCNGG 2 cut(s) 678, 882
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 7 cut(s) 296, 760, 881, 910, 947, 966, 1021
SinI GGWCC 1 cut(s) 983
Sse9I AATT 4 cut(s) 476, 497, 537, 977
SseBI AGGCCT 1 cut(s) 769
SsiI CCGC 8 cut(s) 62, 243, 488, 515, 860, 863, 1070, 1091
SspI AATATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 576, 617
StuI AGGCCT 1 cut(s) 769
StyD4I CCNGG 2 cut(s) 676, 880
TaaI ACNGT 7 cut(s) 10, 112, 350, 370, 667, 894, 1106
TaqI TCGA 8 cut(s) 147, 177, 281, 376, 526, 944, 1002, 1016
TasI AATT 4 cut(s) 476, 497, 537, 977
TatI WGTACW 2 cut(s) 25, 481
TauI GCSGC 4 cut(s) 65, 863, 866, 1072
TfiI GAWTC 6 cut(s) 144, 212, 220, 528, 646, 946
Tru1I TTAA 3 cut(s) 5, 432, 549
Tru9I TTAA 3 cut(s) 5, 432, 549
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 4 cut(s) 344, 563, 597, 758
TseI GCWGC 3 cut(s) 635, 1034, 1066
Tsp45I GTSAC 4 cut(s) 344, 563, 597, 758
TspDTI ATGAA 3 cut(s) 157, 557, 998
TspGWI ACGGA 2 cut(s) 101, 1130
TspRI CASTG 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 983
XagI CCTNNNNNAGG 1 cut(s) 720
XapI RAATTY 1 cut(s) 476
XceI RCATGY 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 2 cut(s) 576, 617
ZrmI AGTACT 1 cut(s) 27
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.