pycom17g23760
MYB Family

transcription

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
22050956 .. 22054404
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g23760.3

Sequence Viewer

Length: 1410 bp
ATGCTTCTTTTATCACCTTTGACGGAGGGTCGTCATCATCATCAGCTCAAAGATGAAAAACAGTTAGGTGATGATGGTGACGTGGAGAGTAGTTTTGCTTTTAATGGCGGAAATAACACGGTGCTTGATTTCCCAGAGTTTTCGGGAGGAATGGGAATGGGGAATCTGCTGGATAGCATCGACTTCGATGACCTCTTCATTGGCATCCATGACGGAGACGTCTTGCCGGATTTGGAGATGGACTCGGAAATACTTGACTTTTCAGTTCCAGCACCCGCCGACGATATCAACACAAAAACAACACCACCACCACCATCCAAAGAGGAAGAGGAGGTTGCTGATGATTACTATAATACTACAAAGACTACGACGACGTCGTCCAAAGTGGAAGACCAGGAGGAGGAGGATTTGCATGGACATGGTGAGGTTGCTGCAGCCGCAGTTAGTATAACGAGTACTAATAATAATTCAGGGTTGAATCAGAATTACTCCAGCTCCAGTACTACTACTACTCCGGATAATCGAGGAGATCAAGAAATAGTGAGTAAAAGAGATGATATTAATCAAATTAGGGCAGCTTGTCGTCCCTCCTCCGGATCCACCCGAAGAAAATCAGCTGACCACAAATTAGCAACAAAGTCTTCACCCACAGCCCAATCCAAAAAGTCTCATGGGAAGCGAAAAGTTAAGAAATATCGGTCGCATAGGAAACATTTGCTAGCCCGTGAGGCAGAGGCAGCTAGCTGGACCCAGAGACGGCAAATGTATGGGGCAGCAGCTGCTGCCGGAGGAGGAGCAGGACCAAAGAGTAGAAGGGACGTCATGATGATGAATAACCCTAATTGGCTTAATGCACCCACCATTGGTTTCCCTTCGATAACTAGTACTACACCTCCTCCCATGCACCACGCTCAGCACCACCGCCAGTTGATCAGACCCTTACATGTGTGGGGTCACCCCACCATGGACCAATCCATGATGCACATGTGGCCGCCAAAGCATCATCTTCCCCACCATTTCCCACCTCCAGTACTACCACCTCCACCACCAGCTCCTGCACATGCATGGCCTCCTGGTCCGCCACCTCCTCCAGACGCTTCGTACTGGCACCACCCTCACTCTCACCACCAGCGTCAGAGATTTCACACCCCACCTGTCCCGGGCATTCCACCACATGCCATGTACAAAGTTGAACCTGCACGCATTGCTGCCCCCACTCCACCACAATCTGGCCCTCACCTTCTTCTCGATTTTCATCCATCAAAAGAAAGCATAGATGCAGCTATTGGAGATGTTTTATCGAAACCGTGGCTCCCTCTTCCTCTTGGCCTAAGACCTCCCACTACCGATACTGTCATGGTGGAGCTACAACGACAGGGAGTTCAGAAATTTCCACCCTCCTGTGCTTGA

Protein Analysis

470

Amino Acids

51.53

Weight (kDa)

6.45

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 376
AatII GACGTC 3 cut(s) 222, 377, 822
Acc36I ACCTGC 1 cut(s) 1204
AccB1I GGYRCC 1 cut(s) 1107
AccB7I CCANNNNNTGG 1 cut(s) 1229
AccIII TCCGGA 2 cut(s) 514, 593
AciI CCGC 6 cut(s) 108, 276, 438, 922, 992, 1079
AclWI GGATC 2 cut(s) 591, 604
AcoI YGGCCR 1 cut(s) 989
AcsI RAATTY 1 cut(s) 1388
AcyI GRCGYC 3 cut(s) 219, 374, 819
AfaI GTAC 6 cut(s) 457, 502, 886, 1032, 1103, 1184
AfiI CCNNNNNNNGG 7 cut(s) 400, 593, 756, 863, 964, 1160, 1229
AflIII ACRYGT 2 cut(s) 943, 984
AgsI TTSAA 2 cut(s) 478, 1193
AhdI GACNNNNNGTC 1 cut(s) 27
AhlI ACTAGT 1 cut(s) 881
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 2 cut(s) 393, 1072
Alw26I GTCTC 3 cut(s) 210, 672, 748
AlwI GGATC 2 cut(s) 591, 604
AlwNI CAGNNNCTG 3 cut(s) 779, 782, 1055
Ama87I CYCGRG 1 cut(s) 1159
Aor13HI TCCGGA 2 cut(s) 514, 593
AoxI GGCC 4 cut(s) 989, 1067, 1231, 1327
ApoI RAATTY 1 cut(s) 1388
AseI ATTAAT 1 cut(s) 561
AspS9I GGNCC 5 cut(s) 747, 800, 967, 1076, 1232
AsuC2I CCSGG 2 cut(s) 1160, 1161
AsuHPI GGTGA 8 cut(s) 6, 80, 89, 434, 636, 947, 1115, 1229
AsuNHI GCTAGC 2 cut(s) 718, 740
AvaI CYCGRG 1 cut(s) 1159
AvaII GGWCC 4 cut(s) 747, 800, 967, 1076
BamHI GGATCC 1 cut(s) 596
BanI GGYRCC 1 cut(s) 1107
BbsI GAAGAC 2 cut(s) 396, 633
BccI CCATC 4 cut(s) 68, 232, 322, 1267
BceAI ACGGC 1 cut(s) 773
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BciT130I CCWGG 2 cut(s) 395, 1074
BclI TGATCA 1 cut(s) 930
BcnI CCSGG 2 cut(s) 1160, 1161
BcoDI GTCTC 3 cut(s) 210, 672, 748
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 3 cut(s) 719, 741, 882
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 1 cut(s) 1204
BglI GCCNNNNNGGC 1 cut(s) 728
BlpI GCTNAGC 1 cut(s) 912
BmcAI AGTACT 4 cut(s) 457, 502, 886, 1032
Bme1390I CCNGG 4 cut(s) 395, 1074, 1160, 1161
Bme18I GGWCC 4 cut(s) 747, 800, 967, 1076
BmeRI GACNNNNNGTC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 1159
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 5 cut(s) 747, 800, 967, 1076, 1232
BmiI GGNNCC 4 cut(s) 598, 749, 1109, 1313
BmrFI CCNGG 4 cut(s) 395, 1074, 1160, 1161
BmsI GCATC 5 cut(s) 186, 213, 969, 1009, 1267
BmtI GCTAGC 2 cut(s) 722, 744
BpiI GAAGAC 2 cut(s) 396, 633
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 4 cut(s) 475, 481, 1011, 1074
Bpu1102I GCTNAGC 1 cut(s) 912
BpuMI CCSGG 2 cut(s) 1160, 1161
BsaBI GATNNNNATC 2 cut(s) 561, 1254
BsaHI GRCGYC 3 cut(s) 219, 374, 819
BsaJI CCNNGG 3 cut(s) 963, 1159, 1307
BsaWI WCCGGW 2 cut(s) 514, 593
Bsc4I CCNNNNNNNGG 7 cut(s) 400, 593, 756, 863, 964, 1160, 1229
Bse1I ACTGG 4 cut(s) 498, 925, 1028, 1109
Bse3DI GCAATG 1 cut(s) 1203
Bse8I GATNNNNATC 2 cut(s) 561, 1254
BseAI TCCGGA 2 cut(s) 514, 593
BseBI CCWGG 2 cut(s) 395, 1074
BseDI CCNNGG 3 cut(s) 963, 1159, 1307
BseGI GGATG 3 cut(s) 204, 314, 1255
BseJI GATNNNNATC 2 cut(s) 561, 1254
BseLI CCNNNNNNNGG 7 cut(s) 400, 593, 756, 863, 964, 1160, 1229
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 1 cut(s) 926
BseNI ACTGG 4 cut(s) 498, 925, 1028, 1109
BseRI GAGGAG 9 cut(s) 344, 413, 416, 540, 580, 804, 807, 885, 1077
BsgI GTGCAG 2 cut(s) 1041, 1182
Bsh1285I CGRYCG 1 cut(s) 701
BshFI GGCC 4 cut(s) 991, 1069, 1233, 1329
BshNI GGYRCC 1 cut(s) 1107
BsiEI CGRYCG 1 cut(s) 701
BsiHKCI CYCGRG 1 cut(s) 1159
BsiSI CCGG 5 cut(s) 227, 515, 594, 786, 1160
BslFI GGGAC 3 cut(s) 570, 830, 1142
BslI CCNNNNNNNGG 7 cut(s) 400, 593, 756, 863, 964, 1160, 1229
BsmAI GTCTC 3 cut(s) 210, 672, 748
BsmBI CGTCTC 2 cut(s) 210, 748
BsmFI GGGAC 3 cut(s) 570, 830, 1142
BsmI GAATGC 1 cut(s) 1164
BsnI GGCC 4 cut(s) 991, 1069, 1233, 1329
BsoBI CYCGRG 1 cut(s) 1159
Bsp13I TCCGGA 2 cut(s) 514, 593
Bsp1407I TGTACA 1 cut(s) 1182
Bsp143I GATC 3 cut(s) 529, 596, 930
Bsp1720I GCTNAGC 1 cut(s) 912
Bsp19I CCATGG 1 cut(s) 963
BspACI CCGC 6 cut(s) 108, 276, 438, 922, 992, 1079
BspANI GGCC 4 cut(s) 991, 1069, 1233, 1329
BspCNI CTCAG 1 cut(s) 925
BspEI TCCGGA 2 cut(s) 514, 593
BspHI TCATGA 1 cut(s) 822
BspLI GGNNCC 4 cut(s) 598, 749, 1109, 1313
BspMAI CTGCAG 1 cut(s) 436
BspMI ACCTGC 1 cut(s) 1204
BspOI GCTAGC 2 cut(s) 722, 744
BspPI GGATC 2 cut(s) 591, 604
BspT107I GGYRCC 1 cut(s) 1107
BsrDI GCAATG 1 cut(s) 1203
BsrGI TGTACA 1 cut(s) 1182
BsrI ACTGG 4 cut(s) 498, 925, 1028, 1109
BssECI CCNNGG 3 cut(s) 963, 1159, 1307
BssMI GATC 3 cut(s) 529, 596, 930
BssNI GRCGYC 3 cut(s) 219, 374, 819
BssT1I CCWWGG 1 cut(s) 963
Bst2UI CCWGG 2 cut(s) 395, 1074
Bst4CI ACNGT 4 cut(s) 63, 121, 1308, 1354
Bst6I CTCTTC 3 cut(s) 200, 321, 1323
BstACI GRCGYC 3 cut(s) 219, 374, 819
BstAPI GCANNNNNTGC 3 cut(s) 779, 782, 1205
BstAUI TGTACA 1 cut(s) 1182
BstC8I GCNNGC 3 cut(s) 720, 742, 1201
BstDEI CTNAG 2 cut(s) 912, 1331
BstDSI CCRYGG 2 cut(s) 963, 1307
BstEII GGTNACC 1 cut(s) 953
BstF5I GGATG 3 cut(s) 204, 314, 1255
BstKTI GATC 3 cut(s) 532, 599, 933
BstMAI GTCTC 3 cut(s) 210, 672, 748
BstMBI GATC 3 cut(s) 529, 596, 930
BstMCI CGRYCG 1 cut(s) 701
BstMWI GCNNNNNNNGC 8 cut(s) 437, 728, 737, 779, 782, 988, 997, 1205
BstNI CCWGG 2 cut(s) 395, 1074
BstNSI RCATGY 4 cut(s) 947, 988, 1064, 1178
BstPI GGTNACC 1 cut(s) 953
BstSCI CCNGG 4 cut(s) 393, 1072, 1158, 1159
BstSFI CTRYAG 1 cut(s) 432
BstV2I GAAGAC 2 cut(s) 396, 633
BstX2I RGATCY 1 cut(s) 596
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 4 cut(s) 991, 1069, 1233, 1329
BtgI CCRYGG 2 cut(s) 963, 1307
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 3 cut(s) 204, 314, 1255
BveI ACCTGC 1 cut(s) 1204
Cac8I GCNNGC 3 cut(s) 720, 742, 1201
CaiI CAGNNNCTG 3 cut(s) 779, 782, 1055
CciI TCATGA 1 cut(s) 822
Cfr13I GGNCC 5 cut(s) 747, 800, 967, 1076, 1232
Cfr9I CCCGGG 1 cut(s) 1159
CseI GACGC 2 cut(s) 1103, 1121
Csp6I GTAC 6 cut(s) 456, 501, 885, 1031, 1102, 1183
CviQI GTAC 6 cut(s) 456, 501, 885, 1031, 1102, 1183
DdeI CTNAG 2 cut(s) 912, 1331
DpnI GATC 3 cut(s) 531, 598, 932
DpnII GATC 3 cut(s) 529, 596, 930
DrdI GACNNNNNNGTC 2 cut(s) 218, 376
DriI GACNNNNNGTC 1 cut(s) 27
DseDI GACNNNNNNGTC 2 cut(s) 218, 376
EaeI YGGCCR 1 cut(s) 989
Eam1104I CTCTTC 3 cut(s) 200, 321, 1323
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 3 cut(s) 200, 321, 1323
EciI GGCGGA 2 cut(s) 123, 1068
Eco130I CCWWGG 1 cut(s) 963
Eco32I GATATC 1 cut(s) 286
Eco47I GGWCC 4 cut(s) 747, 800, 967, 1076
Eco88I CYCGRG 1 cut(s) 1159
Eco91I GGTNACC 1 cut(s) 953
EcoO65I GGTNACC 1 cut(s) 953
EcoRII CCWGG 2 cut(s) 393, 1072
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 963
EcoT22I ATGCAT 1 cut(s) 1066
ErhI CCWWGG 1 cut(s) 963
Esp3I CGTCTC 2 cut(s) 210, 748
FaqI GGGAC 3 cut(s) 570, 830, 1142
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 930
FokI GGATG 3 cut(s) 191, 301, 1242
FspBI CTAG 3 cut(s) 719, 741, 882
GsuI CTGGAG 4 cut(s) 475, 481, 1011, 1074
HaeIII GGCC 4 cut(s) 991, 1069, 1233, 1329
HapII CCGG 5 cut(s) 227, 515, 594, 786, 1160
HgaI GACGC 2 cut(s) 1103, 1121
Hin1I GRCGYC 3 cut(s) 219, 374, 819
HinfI GANTC 3 cut(s) 163, 242, 478
HpaII CCGG 5 cut(s) 227, 515, 594, 786, 1160
HphI GGTGA 8 cut(s) 6, 80, 89, 434, 636, 947, 1115, 1229
Hpy188I TCNGA 5 cut(s) 247, 483, 935, 1137, 1386
Hpy188III TCNNGA 7 cut(s) 144, 515, 533, 594, 823, 1091, 1247
Hpy99I CGWCG 4 cut(s) 284, 373, 376, 379
HpyAV CCTTC 3 cut(s) 807, 882, 1250
HpyCH4III ACNGT 4 cut(s) 63, 121, 1308, 1354
HpyCH4IV ACGT 4 cut(s) 81, 219, 374, 819
HpyCH4V TGCA 9 cut(s) 412, 434, 854, 904, 982, 1058, 1064, 1199, 1280
HpyF10VI GCNNNNNNNGC 8 cut(s) 437, 728, 737, 779, 782, 988, 997, 1205
HpyF3I CTNAG 2 cut(s) 912, 1331
HpySE526I ACGT 4 cut(s) 81, 219, 374, 819
Hsp92I GRCGYC 3 cut(s) 219, 374, 819
Kpn2I TCCGGA 2 cut(s) 514, 593
Ksp22I TGATCA 1 cut(s) 930
Kzo9I GATC 3 cut(s) 529, 596, 930
LmnI GCTCC 5 cut(s) 500, 794, 1057, 1317, 1363
LweI GCATC 5 cut(s) 186, 213, 969, 1009, 1267
MaeI CTAG 3 cut(s) 719, 741, 882
MaeII ACGT 4 cut(s) 81, 219, 374, 819
MaeIII GTNAC 2 cut(s) 77, 953
MalI GATC 3 cut(s) 531, 598, 932
MboI GATC 3 cut(s) 529, 596, 930
MboII GAAGA 8 cut(s) 187, 338, 401, 618, 633, 998, 1235, 1310
MflI RGATCY 1 cut(s) 596
MluCI AATT 6 cut(s) 466, 484, 567, 626, 841, 1388
MlyI GAGTC 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 1066
MroI TCCGGA 2 cut(s) 514, 593
MseI TTAA 4 cut(s) 102, 561, 687, 849
MslI CAYNNNNRTG 3 cut(s) 417, 827, 1063
MspA1I CMGCKG 2 cut(s) 617, 779
MspI CCGG 5 cut(s) 227, 515, 594, 786, 1160
MspR9I CCNGG 4 cut(s) 395, 1074, 1160, 1161
Mva1269I GAATGC 1 cut(s) 1164
MvaI CCWGG 2 cut(s) 395, 1074
MwoI GCNNNNNNNGC 8 cut(s) 437, 728, 737, 779, 782, 988, 997, 1205
NciI CCSGG 2 cut(s) 1160, 1161
NcoI CCATGG 1 cut(s) 963
NdeII GATC 3 cut(s) 529, 596, 930
NheI GCTAGC 2 cut(s) 718, 740
NlaIV GGNNCC 4 cut(s) 598, 749, 1109, 1313
NmuCI GTSAC 2 cut(s) 77, 953
NsiI ATGCAT 1 cut(s) 1066
NspI RCATGY 4 cut(s) 947, 988, 1064, 1178
PagI TCATGA 1 cut(s) 822
PciI ACATGT 2 cut(s) 943, 984
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PctI GAATGC 1 cut(s) 1164
PfeI GAWTC 2 cut(s) 163, 478
PflFI GACNNNGTC 2 cut(s) 373, 376
PflMI CCANNNNNTGG 1 cut(s) 1229
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 2 cut(s) 943, 984
PshBI ATTAAT 1 cut(s) 561
Psp6I CCWGG 2 cut(s) 393, 1072
PspEI GGTNACC 1 cut(s) 953
PspGI CCWGG 2 cut(s) 393, 1072
PspN4I GGNNCC 4 cut(s) 598, 749, 1109, 1313
PspPI GGNCC 5 cut(s) 747, 800, 967, 1076, 1232
PstI CTGCAG 1 cut(s) 436
PstNI CAGNNNCTG 3 cut(s) 779, 782, 1055
PsuI RGATCY 1 cut(s) 596
PsyI GACNNNGTC 2 cut(s) 373, 376
PvuII CAGCTG 2 cut(s) 617, 779
RsaI GTAC 6 cut(s) 457, 502, 886, 1032, 1103, 1184
RsaNI GTAC 6 cut(s) 456, 501, 885, 1031, 1102, 1183
RseI CAYNNNNRTG 3 cut(s) 417, 827, 1063
SaqAI TTAA 4 cut(s) 102, 561, 687, 849
Sau3AI GATC 3 cut(s) 529, 596, 930
Sau96I GGNCC 5 cut(s) 747, 800, 967, 1076, 1232
ScaI AGTACT 4 cut(s) 457, 502, 886, 1032
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 4 cut(s) 395, 1074, 1160, 1161
SfaNI GCATC 5 cut(s) 186, 213, 969, 1009, 1267
SfcI CTRYAG 1 cut(s) 432
SinI GGWCC 4 cut(s) 747, 800, 967, 1076
SmaI CCCGGG 1 cut(s) 1161
SmiMI CAYNNNNRTG 3 cut(s) 417, 827, 1063
SpeI ACTAGT 1 cut(s) 881
Sse9I AATT 6 cut(s) 466, 484, 567, 626, 841, 1388
SsiI CCGC 6 cut(s) 108, 276, 438, 922, 992, 1079
SspMI CTAG 3 cut(s) 719, 741, 882
StyD4I CCNGG 4 cut(s) 393, 1072, 1158, 1159
StyI CCWWGG 1 cut(s) 963
TaaI ACNGT 4 cut(s) 63, 121, 1308, 1354
TaiI ACGT 4 cut(s) 84, 222, 377, 822
TaqI TCGA 6 cut(s) 180, 186, 523, 875, 1248, 1301
TaqII GACCGA 1 cut(s) 687
TasI AATT 6 cut(s) 466, 484, 567, 626, 841, 1388
TatI WGTACW 5 cut(s) 455, 500, 884, 1030, 1182
TauI GCSGC 2 cut(s) 440, 994
TfiI GAWTC 2 cut(s) 163, 478
Tru1I TTAA 4 cut(s) 102, 561, 687, 849
Tru9I TTAA 4 cut(s) 102, 561, 687, 849
TseFI GTSAC 2 cut(s) 77, 953
Tsp45I GTSAC 2 cut(s) 77, 953
TspDTI ATGAA 4 cut(s) 69, 187, 845, 1244
TspGWI ACGGA 2 cut(s) 38, 228
TspMI CCCGGG 1 cut(s) 1159
Tth111I GACNNNGTC 2 cut(s) 373, 376
Van91I CCANNNNNTGG 1 cut(s) 1229
VpaK11BI GGWCC 4 cut(s) 747, 800, 967, 1076
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 1388
XceI RCATGY 4 cut(s) 947, 988, 1064, 1178
XmaI CCCGGG 1 cut(s) 1159
XspI CTAG 3 cut(s) 719, 741, 882
ZraI GACGTC 3 cut(s) 220, 375, 820
ZrmI AGTACT 4 cut(s) 457, 502, 886, 1032
Zsp2I ATGCAT 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.