Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006201

Physical Location & Seq

Genomic Coordinates Forward (+)

16153164 .. 16156900

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAATAGATTGTCTTACTCGCCACAATATTGCTAGCCACCTTCAAAAATATCGGTCGCATAGGAAACACTTGCTAGCCCGTGAGGCAGACGCAGCTAGCTGGACCCAGAGACGGCAAATGTATGGGGCAGCAGCTGCCGCCGGAGGAGGAGCAGGAGCCAAGAGTAGAAGGGACGTCATGATGATGAATAGCCCTAATTGGCTTAATGCACCCACCATGGGTTTCCCTCCGATAACTAGTACTACATCTCCTCCCATGCACCACGCTCAACAGCACCCCCAGTTAACCAGACCCTTACATGTGTGGGGTCACCCCACCATGGACCAATCCATGATGCACATGTGTCCACCAAAGCATCATCTTCCCCACCATTTCCCATCTCCAGTACTACCACCTCCACCACCAGCTCCTGCACATGCATGGCCTCCTCCTCTGCCACCTCCTCCAAACGCTTCGTACTGGCACCACCCTCACTCTCACCACCAGCGTATTTCCTGCCCCACCTGTTCCGGGTATTCCACCGCATGCCATGTACAAAGTAGACCACGCAGGCATTGCTGTCCCCACTCCACCACAATCTGGTCCTCACCCTCTTCTCGACTTTCATCCGTCAAAAGAGAGCATAGATGCAGCTATTGGAGATGTTTTATCGAAACCGTGGCTGCCTCTTCCTCTTGGCCTAAGACCTCCCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.22

Weight (kDa)

10.07

Isoelectric Point (pI)

80.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20570 AT2G20570 AT2G20570 AT5G44190 AT5G44190
fragaria_vesca	FvH4_6g26660 FvH4_6g26660
malus_domestica	MD09G1241800.v1.1 MD17G1234400.v1.1
prunus_persica	Prupe.3G127700_v2.0.a1 Prupe.3G127700_v2.0.a1
pyrus_communis	pycom09g16030 pycom09g16040 pycom17g23760
rosa_chinensis	RchiOBHm_Chr2g0127161
rosa_laevigata	RLG00000018974
rosa_multiflora	Rmu_ssc0000018.1_g000074
rosa_roxburghii	Rroxscaffold_2G00115800 Rroxscaffold_2G00116240
rosa_rugosa	Rorug02G0276500 Rorug02G0276600 Rorug02G0276700
rosa_samantha	Rh2AG327400 Rh2BG337600 Rh2CG314500 Rh2DG354500
rosa_wichuraiana	Rw2G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	544
AciI	CCGC	2 cut(s)	141, 525
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	4 cut(s)	244, 390, 461, 537
AfiI	CCNNNNNNNGG	5 cut(s)	114, 221, 322, 513, 582
AflIII	ACRYGT	2 cut(s)	301, 342
AgsI	TTSAA	1 cut(s)	47
AhlI	ACTAGT	1 cut(s)	239
AluBI	AGCT	5 cut(s)	98, 102, 137, 410, 636
AluI	AGCT	5 cut(s)	98, 102, 137, 410, 636
Alw26I	GTCTC	1 cut(s)	106
AlwNI	CAGNNNCTG	2 cut(s)	137, 413
AoxI	GGCC	2 cut(s)	425, 680
ApeKI	GCWGC	6 cut(s)	95, 131, 134, 137, 633, 665
AspS9I	GGNCC	3 cut(s)	105, 325, 585
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	3 cut(s)	305, 473, 582
AsuNHI	GCTAGC	3 cut(s)	35, 76, 98
AvaII	GGWCC	3 cut(s)	105, 325, 585
BanI	GGYRCC	1 cut(s)	465
BbvI	GCAGC	6 cut(s)	107, 124, 143, 146, 645, 652
BccI	CCATC	1 cut(s)	388
BceAI	ACGGC	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	106
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	4 cut(s)	36, 77, 99, 240
BglI	GCCNNNNNGGC	1 cut(s)	86
BisI	GCNGC	7 cut(s)	96, 132, 135, 138, 141, 634, 666
BlsI	GCNGC	7 cut(s)	97, 133, 136, 139, 142, 635, 667
BmcAI	AGTACT	2 cut(s)	244, 390
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	3 cut(s)	105, 325, 585
BmgT120I	GGNCC	3 cut(s)	105, 325, 585
BmiI	GGNNCC	3 cut(s)	107, 160, 467
BmrFI	CCNGG	1 cut(s)	514
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	3 cut(s)	327, 367, 620
BmtI	GCTAGC	3 cut(s)	39, 80, 102
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	514
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	219, 321, 660
BsaXI	ACNNNNNCTCC	4 cut(s)	235, 238, 265, 268
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 221, 322, 513, 582
Bse1I	ACTGG	3 cut(s)	283, 386, 467
Bse3DI	GCAATG	1 cut(s)	556
BseDI	CCNNGG	3 cut(s)	219, 321, 660
BseGI	GGATG	1 cut(s)	608
BseLI	CCNNNNNNNGG	5 cut(s)	114, 221, 322, 513, 582
BseMI	GCAATG	1 cut(s)	556
BseNI	ACTGG	3 cut(s)	283, 386, 467
BseRI	GAGGAG	6 cut(s)	162, 165, 243, 420, 423, 435
BseXI	GCAGC	6 cut(s)	107, 124, 143, 146, 645, 652
BsgI	GTGCAG	1 cut(s)	399
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	427, 682
BshNI	GGYRCC	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	144, 513
BslFI	GGGAC	2 cut(s)	188, 549
BslI	CCNNNNNNNGG	5 cut(s)	114, 221, 322, 513, 582
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmFI	GGGAC	2 cut(s)	188, 549
BsnI	GGCC	2 cut(s)	427, 682
Bsp1407I	TGTACA	1 cut(s)	535
Bsp19I	CCATGG	2 cut(s)	219, 321
BspACI	CCGC	2 cut(s)	141, 525
BspANI	GGCC	2 cut(s)	427, 682
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	107, 160, 467
BspOI	GCTAGC	3 cut(s)	39, 80, 102
BspT107I	GGYRCC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	556
BsrGI	TGTACA	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	283, 386, 467
BssECI	CCNNGG	3 cut(s)	219, 321, 660
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	219, 321
Bst4CI	ACNGT	1 cut(s)	661
Bst6I	CTCTTC	2 cut(s)	601, 676
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	2 cut(s)	137, 558
BstAUI	TGTACA	1 cut(s)	535
BstC8I	GCNNGC	5 cut(s)	37, 78, 100, 529, 554
BstDEI	CTNAG	1 cut(s)	684
BstDSI	CCRYGG	3 cut(s)	219, 321, 660
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	608
BstMAI	GTCTC	1 cut(s)	106
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 95, 137, 140, 558
BstNSI	RCATGY	4 cut(s)	305, 346, 422, 531
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	512
BstV1I	GCAGC	6 cut(s)	107, 124, 143, 146, 645, 652
BsuRI	GGCC	2 cut(s)	427, 682
BtgI	CCRYGG	3 cut(s)	219, 321, 660
BtsCI	GGATG	1 cut(s)	608
Cac8I	GCNNGC	5 cut(s)	37, 78, 100, 529, 554
CaiI	CAGNNNCTG	2 cut(s)	137, 413
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	3 cut(s)	105, 325, 585
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	4 cut(s)	243, 389, 460, 536
CviQI	GTAC	4 cut(s)	243, 389, 460, 536
DdeI	CTNAG	1 cut(s)	684
Eam1104I	CTCTTC	2 cut(s)	601, 676
EarI	CTCTTC	2 cut(s)	601, 676
Eco130I	CCWWGG	2 cut(s)	219, 321
Eco47I	GGWCC	3 cut(s)	105, 325, 585
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoT14I	CCWWGG	2 cut(s)	219, 321
EcoT22I	ATGCAT	1 cut(s)	424
ErhI	CCWWGG	2 cut(s)	219, 321
Esp3I	CGTCTC	1 cut(s)	106
FaqI	GGGAC	2 cut(s)	188, 549
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	7 cut(s)	96, 132, 135, 138, 141, 634, 666
FokI	GGATG	1 cut(s)	595
Fsp4HI	GCNGC	7 cut(s)	96, 132, 135, 138, 141, 634, 666
FspBI	CTAG	4 cut(s)	36, 77, 99, 240
GluI	GCNGC	7 cut(s)	96, 132, 135, 138, 141, 634, 666
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	427, 682
HapII	CCGG	2 cut(s)	144, 513
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HpaI	GTTAAC	1 cut(s)	288
HpaII	CCGG	2 cut(s)	144, 513
HphI	GGTGA	3 cut(s)	305, 473, 582
Hpy166II	GTNNAC	3 cut(s)	288, 350, 545
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	181, 600
Hpy8I	GTNNAC	3 cut(s)	288, 350, 545
HpyAV	CCTTC	2 cut(s)	53, 165
HpyCH4III	ACNGT	1 cut(s)	661
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	212, 262, 340, 416, 422, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 95, 137, 140, 558
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	1 cut(s)	177
KspAI	GTTAAC	1 cut(s)	288
LmnI	GCTCC	3 cut(s)	152, 158, 415
Lsp1109I	GCAGC	6 cut(s)	107, 124, 143, 146, 645, 652
LweI	GCATC	3 cut(s)	327, 367, 620
MaeI	CTAG	4 cut(s)	36, 77, 99, 240
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	311
MboII	GAAGA	3 cut(s)	356, 588, 663
MluCI	AATT	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	2 cut(s)	207, 287
MslI	CAYNNNNRTG	2 cut(s)	185, 421
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	144, 513
MspR9I	CCNGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	5 cut(s)	86, 95, 137, 140, 558
NciI	CCSGG	1 cut(s)	514
NcoI	CCATGG	2 cut(s)	219, 321
NheI	GCTAGC	3 cut(s)	35, 76, 98
NlaIV	GGNNCC	3 cut(s)	107, 160, 467
NmuCI	GTSAC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	424
NspI	RCATGY	4 cut(s)	305, 346, 422, 531
PaeI	GCATGC	1 cut(s)	531
PagI	TCATGA	1 cut(s)	180
PciI	ACATGT	2 cut(s)	301, 342
PflMI	CCANNNNNTGG	1 cut(s)	582
PkrI	GCNGC	7 cut(s)	97, 133, 136, 139, 142, 635, 667
PscI	ACATGT	2 cut(s)	301, 342
PspEI	GGTNACC	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	107, 160, 467
PspPI	GGNCC	3 cut(s)	105, 325, 585
PstNI	CAGNNNCTG	2 cut(s)	137, 413
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	4 cut(s)	244, 390, 461, 537
RsaNI	GTAC	4 cut(s)	243, 389, 460, 536
RseI	CAYNNNNRTG	2 cut(s)	185, 421
SaqAI	TTAA	2 cut(s)	207, 287
SatI	GCNGC	7 cut(s)	96, 132, 135, 138, 141, 634, 666
Sau96I	GGNCC	3 cut(s)	105, 325, 585
ScaI	AGTACT	2 cut(s)	244, 390
ScrFI	CCNGG	1 cut(s)	514
SfaNI	GCATC	3 cut(s)	327, 367, 620
SinI	GGWCC	3 cut(s)	105, 325, 585
SmiMI	CAYNNNNRTG	2 cut(s)	185, 421
SpeI	ACTAGT	1 cut(s)	239
SphI	GCATGC	1 cut(s)	531
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	141, 525
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	4 cut(s)	36, 77, 99, 240
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	2 cut(s)	219, 321
TaaI	ACNGT	1 cut(s)	661
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	601, 654
TaqII	GACCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	199
TatI	WGTACW	3 cut(s)	242, 388, 535
TauI	GCSGC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	207, 287
Tru9I	TTAA	2 cut(s)	207, 287
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	6 cut(s)	95, 131, 134, 137, 633, 665
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	203, 597
TspGWI	ACGGA	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	582
VpaK11BI	GGWCC	3 cut(s)	105, 325, 585
XceI	RCATGY	4 cut(s)	305, 346, 422, 531
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	4 cut(s)	36, 77, 99, 240
ZraI	GACGTC	1 cut(s)	178
ZrmI	AGTACT	2 cut(s)	244, 390
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.