Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006201

Physical Location & Seq

Genomic Coordinates Forward (+)

29759754 .. 29765155

Gene Structure 5402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGTATGTGGTGAAGAGAGACGGGCGCCAGGAGGCGGTCCATTTCGACAAGATTACGGCCCGGTTGAAGAAGCTCAGCTATGGGCTTAGCATCGAGCATTGCGACCCGGTTTTGGTGGCCCAGAAGGTCTGCGCCGGAGTCTACAAGGGCGTCACCACCAGCCAGCTTGATGAATTGGCTGCTGAGACCGCCGCCGCTATGACCGCCAACCACCCTGACTATGCCTGCTTGGCGGCAAGGATTGTTGTTTCAAACCTACACAAGAACACTAAGAAGTCCTTTTCGGAGACGGTCAAAATTATGTACAACCATGTCAATGATAGATCTGGGCTGGAAGCTCCTCTGATTGCTGATGATGTTTATGAAATCATCATGAAGAATGCGGCGTGTTTGGACAGTGAGATCATTTACGACCGGGACTTTGACTACGACTACTTTGGTTTCAAGACTCTTGAGAGGTCTTACCTCTTAAAGGTTCATGGGACGGTTGTAGAAAGGCCTCAACACATGCTAATGAGGGTTGCTGTTGGAATACACAAGAATGATATTGATTCTGTTATCAGAACATACCATCTCATGTCTCAACGGTGGTTCACTCATGCTTCTCCCACCCTTTTCAATTCTGGAACGCCAAGGCCTCAATTGAGTAGCTGCTTCCTTGTTTGCATGAAAGATGATAGCATTGAAGGCATATATGATACCTTGAAGGAATGTGCTGTTATCAGCAAATCAGCTGGGGGAATTGGTGTCTCTGTTCACAACATTCGTGCCACTGGCAGTTATATTCGTGGAACAAATGGGACATCCAATGGCATCATTCCGATGCTACGAGTTTTTAATGATACTGCCCGTTATGTTGATCAGGGGGGAGGCAAAAGGAAAGGTGCTTTTGCTGTGTACTTGGAGCCCTGGCATGCTGATATATTTGACTTTCTGGATCTAAGGAAAAATCATGGAAAGGAAGAGAATAGAGCTCGTGATCTTTTTTATGCTCTTTGGGTGCCTGATCTGTTCATGAAAAGAGTTGAAAGCAATGGAGATTGGTCATTATTTTGTCCTAATGAGTCTCCAGGTTTGGCAGATTGCTGGGGTGAAAAATTTGAGGAACTGTACACTAGTTATGAAAGAGAGGGAAAGGCCAAAAAGGTTGTCCCGGCACAGCAACTGTGGTTTGAAGTTTTGAAATCCCAGATAGAAACAGGAACTCCCTACATGCTTTTTAAGGATACTTGCAATAAGAAAAGCAATCAGCAAAATCTGGGAACCATAAAATGCTCAAACTTGTGTACTGAGATAGTTGAGTACACTAGTCCAACAGAAACTGCTGTATGCAACCTGGCATCAATTGCTCTACCAAGATTTGTCAGGGAGAAGGCTGTTCCTTTTGAGTCACATCCATCTAAGCTTGCTGGAAGCAAAGGTTCCAAAAATCGCTACTTTGACTTTGACAAACTAGCAGAGGTCACTGCAATTGTCACTGTAAACCTCAACAAGATAATTGATGTTAACTACTACCCCGTTGAGAGTGCAAAGACGTCTAATTTACGACATAGGCCAATTGGGATTGGGGTTCAGGGTCTTGCTGATACCTTCATCTTGCTTGGCATGTCCTTTGATTCGCCTGAGGCTCAACAACTGAATAAGGACATTTTTGAGACCATTTACTACCATGCTCTGAAAGCTTCTTCTGAGTTGGCATCAAAAGAAGGCCCATATGAAACATACCAGGGTTGTCCAGTTAGCAAGGGAATTCTTCAGCCAGACATGTGGGATGTAAAACCCTCAGATCGATGGGATTGGGGTGCTATTCGGGAAATGATATCACAGAATGGAATCAGAAATTCACTGCTTGTTGCCCCCATGCCTACTGCTTCAACTAGCCAAATCCTTGGAAACAATGAGTGCTTTGAGCCATATACTTCCAATATCTACAGTCGCAGGGTTCTGAGTGGTGAATTTGTTGTGGTGAACAAACATCTTCTTCATGACTTGGTTGAGATGGGTCTTTGGTCTCCGGCTATTAAGAATAAGATAATCTATGAGGATGGCTCTGTTCAGAAAATCCCACAGATCCCTGATGATCTGAAAGCCATTTACAGAACTGTGTGGGAGATCAAGCAAAGAACATTGGTTGACATGGCTGTTGATAGGGGATGTTACATAGATCAGAGTCAAAGTCTTAATATACATATGGACCAACCCAATTTCGGGAAGCTTACTTCATTGCATTTCTATGCTTGGAGACAGGGTCTTAAAACAGGAATGTATTATCTACGATCGCGTGCTGCAGCTGATGCCATCAAGTTTACTGTTGATACTGAGAGTCTCAAGGAAAAGCCAAAGGTGGCGGTGGAAAGTGATGAGAATACCCAAATGGCACAGATGGTATGCTCTCTGACAAACCGTGAAGAATGCATGTCTTGTGGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

810

Amino Acids

91.3

Weight (kDa)

6.6

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-cone	PF03477	1 - 88	6.3e-14	ATP cone domain
Ribonuc_red_lgN	PF00317	142 - 212	3.5e-24	Ribonucleotide reductase, all-alpha domain
Ribonuc_red_lgC	PF02867	216 - 757	6.3e-221	Ribonucleotide reductase, barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20570 AT2G20570 AT2G20570 AT5G44190 AT5G44190
fragaria_vesca	FvH4_6g26660 FvH4_6g26660
malus_domestica	MD09G1241800.v1.1 MD17G1234400.v1.1
prunus_persica	Prupe.3G127700_v2.0.a1 Prupe.3G127700_v2.0.a1
pyrus_communis	pycom09g16030 pycom09g16040 pycom17g23760
rosa_chinensis	RchiOBHm_Chr2g0127161
rosa_laevigata	RLG00000018974
rosa_multiflora	Rmu_ssc0000018.1_g000074
rosa_roxburghii	Rroxscaffold_2G00115800 Rroxscaffold_2G00116240
rosa_rugosa	Rorug02G0276500 Rorug02G0276600 Rorug02G0276700
rosa_samantha	Rh2AG327400 Rh2BG337600 Rh2CG314500 Rh2DG354500
rosa_wichuraiana	Rw2G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1538
AccB1I	GGYRCC	2 cut(s)	24, 1000
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	2281
AciI	CCGC	8 cut(s)	35, 189, 192, 195, 204, 233, 383, 2348
AclWI	GGATC	2 cut(s)	945, 2065
AcsI	RAATTY	4 cut(s)	1097, 1749, 1840, 1955
AcuI	CTGAAG	1 cut(s)	1739
AcyI	GRCGYC	3 cut(s)	25, 150, 1535
AfaI	GTAC	5 cut(s)	305, 899, 1112, 1288, 1304
AfiI	CCNNNNNNNGG	5 cut(s)	34, 112, 472, 2207, 2208
AflIII	ACRYGT	1 cut(s)	1764
AhlI	ACTAGT	2 cut(s)	1115, 1307
AjnI	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
Alw21I	GWGCWC	1 cut(s)	976
AlwI	GGATC	2 cut(s)	945, 2065
AlwNI	CAGNNNCTG	2 cut(s)	1165, 1322
AoxI	GGCC	7 cut(s)	57, 117, 497, 635, 1137, 1553, 1708
ApeKI	GCWGC	4 cut(s)	179, 651, 2285, 2288
ApoI	RAATTY	4 cut(s)	1097, 1749, 1840, 1955
ArsI	GACNNNNNNTTYG	4 cut(s)	404, 436, 1134, 1166
AspLEI	GCGC	2 cut(s)	27, 134
AspS9I	GGNCC	5 cut(s)	37, 58, 118, 1709, 2194
AsuC2I	CCSGG	4 cut(s)	61, 107, 416, 1154
AsuHPI	GGTGA	5 cut(s)	22, 145, 1103, 1964, 1978
AvaII	GGWCC	2 cut(s)	37, 2194
AxyI	CCTNAGG	1 cut(s)	1623
BanI	GGYRCC	2 cut(s)	24, 1000
BanII	GRGCYC	2 cut(s)	909, 976
BauI	CACGAG	1 cut(s)	975
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	4 cut(s)	166, 638, 2272, 2300
BccI	CCATC	7 cut(s)	579, 1405, 1785, 1993, 2039, 2306, 2377
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BciVI	GTATCC	1 cut(s)	1219
BclI	TGATCA	1 cut(s)	859
BcnI	CCSGG	4 cut(s)	61, 107, 416, 1154
BcuI	ACTAGT	2 cut(s)	1115, 1307
BfaI	CTAG	4 cut(s)	1116, 1308, 1454, 1878
BfmI	CTRYAG	2 cut(s)	1930, 2286
BfoI	RGCGCY	1 cut(s)	28
BfuI	GTATCC	1 cut(s)	1219
BglI	GCCNNNNNGGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	8 cut(s)	180, 192, 195, 234, 384, 652, 2286, 2289
BlpI	GCTNAGC	2 cut(s)	74, 86
BlsI	GCNGC	8 cut(s)	181, 193, 196, 235, 385, 653, 2287, 2290
Bme1390I	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
Bme18I	GGWCC	2 cut(s)	37, 2194
BmgT120I	GGNCC	5 cut(s)	37, 58, 118, 1709, 2194
BmiI	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
BmrFI	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
BmsI	GCATC	6 cut(s)	99, 813, 822, 1349, 1706, 2284
BplI	GAGNNNNNCTC	2 cut(s)	2033, 2065
BpmI	CTGGAG	1 cut(s)	1053
Bpu1102I	GCTNAGC	2 cut(s)	74, 86
BpuEI	CTTGAG	2 cut(s)	473, 2312
BpuMI	CCSGG	4 cut(s)	61, 107, 416, 1154
Bsa29I	ATCGAT	1 cut(s)	1789
BsaHI	GRCGYC	3 cut(s)	25, 150, 1535
BsaI	GGTCTC	3 cut(s)	179, 1649, 2016
BsaJI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BsaXI	ACNNNNNCTCC	4 cut(s)	1189, 1219, 2233, 2263
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 112, 472, 2207, 2208
Bse1I	ACTGG	2 cut(s)	778, 1736
Bse21I	CCTNAGG	1 cut(s)	1623
Bse3DI	GCAATG	3 cut(s)	97, 1039, 2222
BseBI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BseCI	ATCGAT	1 cut(s)	1789
BseDI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BseGI	GGATG	5 cut(s)	803, 1393, 1777, 2050, 2159
BseLI	CCNNNNNNNGG	5 cut(s)	34, 112, 472, 2207, 2208
BseMI	GCAATG	3 cut(s)	97, 1039, 2222
BseMII	CTCAG	8 cut(s)	88, 174, 1281, 1614, 1680, 1797, 1937, 2310
BseNI	ACTGG	2 cut(s)	778, 1736
BseRI	GAGGAG	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	166, 638, 2272, 2300
BseYI	CCCAGC	2 cut(s)	734, 1086
Bsh1236I	CGCG	1 cut(s)	2281
Bsh1285I	CGRYCG	2 cut(s)	415, 2279
BshFI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BshNI	GGYRCC	2 cut(s)	24, 1000
BshVI	ATCGAT	1 cut(s)	1789
BsiEI	CGRYCG	2 cut(s)	415, 2279
BsiHKAI	GWGCWC	1 cut(s)	976
BsiSI	CCGG	6 cut(s)	61, 107, 135, 415, 1154, 2015
BslFI	GGGAC	4 cut(s)	431, 496, 814, 1136
BslI	CCNNNNNNNGG	5 cut(s)	34, 112, 472, 2207, 2208
BsmBI	CGTCTC	2 cut(s)	12, 281
BsmFI	GGGAC	4 cut(s)	431, 496, 814, 1136
BsmI	GAATGC	2 cut(s)	385, 2417
BsnI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
Bso31I	GGTCTC	3 cut(s)	179, 1649, 2016
Bsp1286I	GDGCHC	2 cut(s)	909, 976
Bsp1407I	TGTACA	2 cut(s)	303, 1110
Bsp1720I	GCTNAGC	2 cut(s)	74, 86
BspACI	CCGC	8 cut(s)	35, 189, 192, 195, 204, 233, 383, 2348
BspANI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BspCNI	CTCAG	8 cut(s)	87, 175, 1282, 1615, 1681, 1796, 1938, 2311
BspDI	ATCGAT	1 cut(s)	1789
BspFNI	CGCG	1 cut(s)	2281
BspHI	TCATGA	3 cut(s)	372, 1014, 1984
BspLI	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
BspMAI	CTGCAG	1 cut(s)	2290
BspPI	GGATC	2 cut(s)	945, 2065
BspT107I	GGYRCC	2 cut(s)	24, 1000
BspTNI	GGTCTC	3 cut(s)	179, 1649, 2016
BsrDI	GCAATG	3 cut(s)	97, 1039, 2222
BsrGI	TGTACA	2 cut(s)	303, 1110
BsrI	ACTGG	2 cut(s)	778, 1736
BssECI	CCNNGG	4 cut(s)	632, 908, 1726, 1888
BssNI	GRCGYC	3 cut(s)	25, 150, 1535
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	2 cut(s)	632, 1888
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
Bst6I	CTCTTC	2 cut(s)	8, 957
BstACI	GRCGYC	3 cut(s)	25, 150, 1535
BstAPI	GCANNNNNTGC	2 cut(s)	1346, 2294
BstAUI	TGTACA	2 cut(s)	303, 1110
BstC8I	GCNNGC	5 cut(s)	164, 226, 915, 1407, 2283
BstENI	CCTNNNNNAGG	1 cut(s)	470
BstF5I	GGATG	5 cut(s)	803, 1393, 1777, 2050, 2159
BstFNI	CGCG	1 cut(s)	2281
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	27, 134
BstMCI	CGRYCG	2 cut(s)	415, 2279
BstMWI	GCNNNNNNNGC	7 cut(s)	188, 203, 230, 687, 1346, 1679, 2294
BstNI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
BstNSI	RCATGY	6 cut(s)	511, 917, 1216, 1609, 1768, 2419
BstSCI	CCNGG	9 cut(s)	27, 59, 105, 414, 908, 1069, 1152, 1335, 1725
BstSFI	CTRYAG	2 cut(s)	1930, 2286
BstUI	CGCG	1 cut(s)	2281
BstV1I	GCAGC	4 cut(s)	166, 638, 2272, 2300
BstX2I	RGATCY	3 cut(s)	323, 937, 2070
BstXI	CCANNNNNNTGG	2 cut(s)	1767, 1889
BstYI	RGATCY	3 cut(s)	323, 937, 2070
Bsu15I	ATCGAT	1 cut(s)	1789
Bsu36I	CCTNAGG	1 cut(s)	1623
BsuI	GTATCC	1 cut(s)	1219
BsuRI	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
BsuTUI	ATCGAT	1 cut(s)	1789
BtsCI	GGATG	5 cut(s)	803, 1393, 1777, 2050, 2159
BtsI	GCAGTG	2 cut(s)	1464, 1844
BtsIMutI	CAGTG	5 cut(s)	403, 771, 1464, 1476, 1844
Cac8I	GCNNGC	5 cut(s)	164, 226, 915, 1407, 2283
CaiI	CAGNNNCTG	2 cut(s)	1165, 1322
CciI	TCATGA	3 cut(s)	372, 1014, 1984
CfoI	GCGC	2 cut(s)	27, 134
Cfr13I	GGNCC	5 cut(s)	37, 58, 118, 1709, 2194
ClaI	ATCGAT	1 cut(s)	1789
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
CviQI	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
DinI	GGCGCC	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	8, 957
EarI	CTCTTC	2 cut(s)	8, 957
Ecl136II	GAGCTC	1 cut(s)	974
Eco130I	CCWWGG	2 cut(s)	632, 1888
Eco147I	AGGCCT	2 cut(s)	499, 637
Eco24I	GRGCYC	2 cut(s)	909, 976
Eco31I	GGTCTC	3 cut(s)	179, 1649, 2016
Eco32I	GATATC	1 cut(s)	1821
Eco47I	GGWCC	2 cut(s)	37, 2194
Eco53kI	GAGCTC	1 cut(s)	974
Eco57I	CTGAAG	1 cut(s)	1739
Eco81I	CCTNAGG	1 cut(s)	1623
EcoICRI	GAGCTC	1 cut(s)	974
EcoNI	CCTNNNNNAGG	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	1749
EcoRII	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
EcoRV	GATATC	1 cut(s)	1821
EcoT14I	CCWWGG	2 cut(s)	632, 1888
EcoT22I	ATGCAT	1 cut(s)	2417
EcoT38I	GRGCYC	2 cut(s)	909, 976
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	632, 1888
Esp3I	CGTCTC	2 cut(s)	12, 281
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	4 cut(s)	431, 496, 814, 1136
FauNDI	CATATG	2 cut(s)	1714, 2190
FbaI	TGATCA	1 cut(s)	859
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	180, 192, 195, 234, 384, 652, 2286, 2289
FokI	GGATG	5 cut(s)	790, 1380, 1784, 2057, 2166
FriOI	GRGCYC	2 cut(s)	909, 976
Fsp4HI	GCNGC	8 cut(s)	180, 192, 195, 234, 384, 652, 2286, 2289
FspBI	CTAG	4 cut(s)	1116, 1308, 1454, 1878
GlaI	GCGC	2 cut(s)	26, 133
GluI	GCNGC	8 cut(s)	180, 192, 195, 234, 384, 652, 2286, 2289
GsaI	CCCAGC	2 cut(s)	738, 1090
GsuI	CTGGAG	1 cut(s)	1053
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	7 cut(s)	59, 119, 499, 637, 1139, 1555, 1710
HapII	CCGG	6 cut(s)	61, 107, 135, 415, 1154, 2015
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	2 cut(s)	27, 134
Hin1I	GRCGYC	3 cut(s)	25, 150, 1535
Hin6I	GCGC	2 cut(s)	25, 132
HinP1I	GCGC	2 cut(s)	25, 132
HincII	GTYRAC	2 cut(s)	1507, 2134
HindII	GTYRAC	2 cut(s)	1507, 2134
HindIII	AAGCTT	3 cut(s)	1403, 1680, 2213
HinfI	GANTC	9 cut(s)	138, 448, 551, 1064, 1388, 1616, 1833, 2170, 2323
HpaI	GTTAAC	1 cut(s)	1507
HpaII	CCGG	6 cut(s)	61, 107, 135, 415, 1154, 2015
HphI	GGTGA	5 cut(s)	22, 145, 1103, 1964, 1978
HpyAV	CCTTC	6 cut(s)	118, 680, 700, 1366, 1600, 1700
HpyCH4IV	ACGT	1 cut(s)	1535
HpyCH4V	TGCA	8 cut(s)	666, 1233, 1332, 1469, 1529, 2227, 2288, 2415
HpyF10VI	GCNNNNNNNGC	7 cut(s)	188, 203, 230, 687, 1346, 1679, 2294
HpySE526I	ACGT	1 cut(s)	1535
Hsp92I	GRCGYC	3 cut(s)	25, 150, 1535
HspAI	GCGC	2 cut(s)	25, 132
KasI	GGCGCC	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	859
KspAI	GTTAAC	1 cut(s)	1507
LmnI	GCTCC	2 cut(s)	343, 904
Lsp1109I	GCAGC	4 cut(s)	166, 638, 2272, 2300
LweI	GCATC	6 cut(s)	99, 813, 822, 1349, 1706, 2284
MaeI	CTAG	4 cut(s)	1116, 1308, 1454, 1878
MaeII	ACGT	1 cut(s)	1535
MaeIII	GTNAC	5 cut(s)	151, 1389, 1462, 1474, 2156
MboII	GAAGA	9 cut(s)	25, 79, 388, 974, 1677, 1745, 1970, 1973, 2420
MfeI	CAATTG	4 cut(s)	641, 1344, 1470, 1557
MflI	RGATCY	3 cut(s)	323, 937, 2070
MhlI	GDGCHC	2 cut(s)	909, 976
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	6 cut(s)	147, 442, 1073, 1397, 2179, 2332
MmeI	TCCRAC	2 cut(s)	508, 1337
Mph1103I	ATGCAT	1 cut(s)	2417
MseI	TTAA	7 cut(s)	470, 837, 1221, 1506, 2022, 2181, 2253
MslI	CAYNNNNRTG	5 cut(s)	315, 512, 540, 821, 2232
MspA1I	CMGCKG	2 cut(s)	734, 2291
MspI	CCGG	6 cut(s)	61, 107, 135, 415, 1154, 2015
MspR9I	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
MunI	CAATTG	4 cut(s)	641, 1344, 1470, 1557
Mva1269I	GAATGC	2 cut(s)	385, 2417
MvaI	CCWGG	5 cut(s)	29, 910, 1071, 1337, 1727
MvnI	CGCG	1 cut(s)	2281
MwoI	GCNNNNNNNGC	7 cut(s)	188, 203, 230, 687, 1346, 1679, 2294
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	4 cut(s)	61, 107, 416, 1154
NdeI	CATATG	2 cut(s)	1714, 2190
NlaIV	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
NmuCI	GTSAC	4 cut(s)	151, 1389, 1462, 1474
NsiI	ATGCAT	1 cut(s)	2417
NspI	RCATGY	6 cut(s)	511, 917, 1216, 1609, 1768, 2419
PaeI	GCATGC	1 cut(s)	917
PagI	TCATGA	3 cut(s)	372, 1014, 1984
PceI	AGGCCT	2 cut(s)	499, 637
PciI	ACATGT	1 cut(s)	1764
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	2 cut(s)	385, 2417
PfeI	GAWTC	3 cut(s)	551, 1616, 1833
PflFI	GACNNNGTC	1 cut(s)	2247
PkrI	GCNGC	8 cut(s)	181, 193, 196, 235, 385, 653, 2287, 2290
Ple19I	CGATCG	1 cut(s)	2279
PleI	GAGTC	6 cut(s)	146, 442, 1072, 1396, 2178, 2331
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	6 cut(s)	146, 442, 1072, 1396, 2178, 2331
PscI	ACATGT	1 cut(s)	1764
Psp124BI	GAGCTC	1 cut(s)	976
Psp6I	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
PspFI	CCCAGC	2 cut(s)	734, 1086
PspGI	CCWGG	5 cut(s)	27, 908, 1069, 1335, 1725
PspN4I	GGNNCC	5 cut(s)	26, 906, 1002, 1264, 1423
PspPI	GGNCC	5 cut(s)	37, 58, 118, 1709, 2194
PstI	CTGCAG	1 cut(s)	2290
PstNI	CAGNNNCTG	2 cut(s)	1165, 1322
PsuI	RGATCY	3 cut(s)	323, 937, 2070
PsyI	GACNNNGTC	1 cut(s)	2247
PvuI	CGATCG	1 cut(s)	2279
PvuII	CAGCTG	2 cut(s)	734, 2291
RsaI	GTAC	5 cut(s)	305, 899, 1112, 1288, 1304
RsaNI	GTAC	5 cut(s)	304, 898, 1111, 1287, 1303
RseI	CAYNNNNRTG	5 cut(s)	315, 512, 540, 821, 2232
SacI	GAGCTC	1 cut(s)	976
SaqAI	TTAA	7 cut(s)	470, 837, 1221, 1506, 2022, 2181, 2253
SatI	GCNGC	8 cut(s)	180, 192, 195, 234, 384, 652, 2286, 2289
Sau96I	GGNCC	5 cut(s)	37, 58, 118, 1709, 2194
SchI	GAGTC	6 cut(s)	147, 442, 1073, 1397, 2179, 2332
ScrFI	CCNGG	9 cut(s)	29, 61, 107, 416, 910, 1071, 1154, 1337, 1727
SduI	GDGCHC	2 cut(s)	909, 976
SfaNI	GCATC	6 cut(s)	99, 813, 822, 1349, 1706, 2284
SfcI	CTRYAG	2 cut(s)	1930, 2286
SfoI	GGCGCC	1 cut(s)	26
SinI	GGWCC	2 cut(s)	37, 2194
SmiMI	CAYNNNNRTG	5 cut(s)	315, 512, 540, 821, 2232
SmlI	CTYRAG	2 cut(s)	452, 2327
SmoI	CTYRAG	2 cut(s)	452, 2327
SpeI	ACTAGT	2 cut(s)	1115, 1307
SphI	GCATGC	1 cut(s)	917
SseBI	AGGCCT	2 cut(s)	499, 637
SsiI	CCGC	8 cut(s)	35, 189, 192, 195, 204, 233, 383, 2348
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	4 cut(s)	1116, 1308, 1454, 1878
SstI	GAGCTC	1 cut(s)	976
StuI	AGGCCT	2 cut(s)	499, 637
StyD4I	CCNGG	9 cut(s)	27, 59, 105, 414, 908, 1069, 1152, 1335, 1725
StyI	CCWWGG	2 cut(s)	632, 1888
TaiI	ACGT	1 cut(s)	1538
TaqI	TCGA	3 cut(s)	45, 93, 1789
TatI	WGTACW	5 cut(s)	303, 897, 1110, 1286, 1302
TauI	GCSGC	4 cut(s)	194, 197, 236, 386
TfiI	GAWTC	3 cut(s)	551, 1616, 1833
Tru1I	TTAA	7 cut(s)	470, 837, 1221, 1506, 2022, 2181, 2253
Tru9I	TTAA	7 cut(s)	470, 837, 1221, 1506, 2022, 2181, 2253
TscAI	CASTG	5 cut(s)	403, 778, 1471, 1483, 1851
TseFI	GTSAC	4 cut(s)	151, 1389, 1462, 1474
TseI	GCWGC	4 cut(s)	179, 651, 2285, 2288
Tsp45I	GTSAC	4 cut(s)	151, 1389, 1462, 1474
TspRI	CASTG	5 cut(s)	403, 778, 1471, 1483, 1851
Tth111I	GACNNNGTC	1 cut(s)	2247
VpaK11BI	GGWCC	2 cut(s)	37, 2194
XagI	CCTNNNNNAGG	1 cut(s)	470
XapI	RAATTY	4 cut(s)	1097, 1749, 1840, 1955
XceI	RCATGY	6 cut(s)	511, 917, 1216, 1609, 1768, 2419
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	1116, 1308, 1454, 1878
ZraI	GACGTC	1 cut(s)	1536
Zsp2I	ATGCAT	1 cut(s)	2417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.