Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006201

Physical Location & Seq

Genomic Coordinates Forward (+)

16151940 .. 16152485

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCTTTTTTTATCACCTTTGCGGGAGGGTCATCATCACCATCAGCTCAAAGATGAAAAACAATTAGGCGATGATGGTGACGTGGAGAGTAGCTTTGCTTTTAATGGCGAAAATAACGCGGTGCTTGATTTCCCAGAGTTTTCCGGGGGAATGGGAATGGGGAATCTGCTGGATAGCATTGACTTCGATGACTTCTTCATTGGTATCCATGACGGAGATGTGTTGCCGGATTTGGAAATGGACTCGGAAATACTTGACTTTTCAGTTTCAGCACCAGCCGGCGACACCAACACAACAACAATTACACCATCCAAAGAGGAAGAGGAGGTTGCTGACGATTACTATAATATCGCAAAGACTACGACGACGTTGTCCAAAGTGGAAGAACCGGAGGAGGAGGACATGCAGGGACATGACGAGGTTGCTGCAGCCGCAGTTAGTATAACGAGTACTAATAATAATTCAGGGTTGAATCAAAATTACTCCAGCTCCAATACTACTCCTCCTACTCCCGATCGATCGAATAGATCAAGAAATAGCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010380 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010638 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051193 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090056 GO:0140110 GO:1900055 GO:1900056 GO:1901401 GO:1901463 GO:1902680 GO:1903506 GO:1903508 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

182

Amino Acids

19.76

Weight (kDa)

4.08

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20570 AT2G20570 AT2G20570 AT5G44190 AT5G44190
fragaria_vesca	FvH4_6g26660 FvH4_6g26660
malus_domestica	MD09G1241800.v1.1 MD17G1234400.v1.1
prunus_persica	Prupe.3G127700_v2.0.a1 Prupe.3G127700_v2.0.a1
pyrus_communis	pycom09g16030 pycom09g16040 pycom17g23760
rosa_chinensis	RchiOBHm_Chr2g0127161
rosa_laevigata	RLG00000018974
rosa_multiflora	Rmu_ssc0000018.1_g000074
rosa_roxburghii	Rroxscaffold_2G00115800 Rroxscaffold_2G00116240
rosa_rugosa	Rorug02G0276500 Rorug02G0276600 Rorug02G0276700
rosa_samantha	Rh2AG327400 Rh2BG337600 Rh2CG314500 Rh2DG354500
rosa_wichuraiana	Rw2G026570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	370
AccII	CGCG	1 cut(s)	119
AciI	CCGC	3 cut(s)	22, 119, 432
AfaI	GTAC	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	472
AjiI	CACGTC	1 cut(s)	82
AluBI	AGCT	3 cut(s)	46, 93, 489
AluI	AGCT	3 cut(s)	46, 93, 489
ApeKI	GCWGC	2 cut(s)	425, 428
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	3 cut(s)	6, 29, 89
BbvI	GCAGC	2 cut(s)	412, 440
BccI	CCATC	3 cut(s)	48, 68, 316
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 407, 441
BciVI	GTATCC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	426
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	3 cut(s)	426, 429, 432
BlsI	GCNGC	3 cut(s)	427, 430, 433
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	469
BpuMI	CCSGG	1 cut(s)	145
Bsa29I	ATCGAT	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	388
BsaXI	ACNNNNNCTCC	4 cut(s)	473, 487, 503, 517
Bse118I	RCCGGY	1 cut(s)	278
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	308
BseRI	GAGGAG	4 cut(s)	338, 407, 410, 492
BseXI	GCAGC	2 cut(s)	412, 440
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	2 cut(s)	517, 521
BshVI	ATCGAT	1 cut(s)	517
BsiEI	CGRYCG	2 cut(s)	517, 521
BsiSI	CCGG	4 cut(s)	144, 227, 279, 389
BslFI	GGGAC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	514, 518, 527
BspACI	CCGC	3 cut(s)	22, 119, 432
BspDI	ATCGAT	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	119
BspMAI	CTGCAG	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	278
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	514, 518, 527
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	3 cut(s)	517, 521, 530
BstMBI	GATC	3 cut(s)	514, 518, 527
BstMCI	CGRYCG	2 cut(s)	517, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	412, 440
Bsu15I	ATCGAT	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	517
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	278
ClaI	ATCGAT	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	3 cut(s)	209, 403, 413
CviJI	RGCY	5 cut(s)	46, 93, 278, 431, 489
CviKI_1	RGCY	5 cut(s)	46, 93, 278, 431, 489
CviQI	GTAC	1 cut(s)	450
DpnI	GATC	3 cut(s)	516, 520, 529
DpnII	GATC	3 cut(s)	514, 518, 527
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
FaeI	CATG	3 cut(s)	212, 406, 416
FaiI	YATR	5 cut(s)	210, 345, 404, 414, 443
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	3 cut(s)	208, 402, 412
FauI	CCCGC	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	426, 429, 432
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	3 cut(s)	426, 429, 432
GluI	GCNGC	3 cut(s)	426, 429, 432
GsuI	CTGGAG	1 cut(s)	469
HapII	CCGG	4 cut(s)	144, 227, 279, 389
Hin1II	CATG	3 cut(s)	212, 406, 416
HinfI	GANTC	3 cut(s)	163, 242, 472
HpaII	CCGG	4 cut(s)	144, 227, 279, 389
HphI	GGTGA	3 cut(s)	6, 29, 89
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	512, 531
Hpy99I	CGWCG	2 cut(s)	367, 370
HpyCH4IV	ACGT	2 cut(s)	81, 368
HpyCH4V	TGCA	2 cut(s)	406, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpySE526I	ACGT	2 cut(s)	81, 368
Hsp92II	CATG	3 cut(s)	212, 406, 416
KroI	GCCGGC	1 cut(s)	278
KroNI	GCCGGC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	514, 518, 527
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	2 cut(s)	412, 440
MaeII	ACGT	2 cut(s)	81, 368
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	516, 520, 529
MboI	GATC	3 cut(s)	514, 518, 527
MboII	GAAGA	3 cut(s)	187, 332, 395
MluCI	AATT	4 cut(s)	62, 300, 460, 478
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	9 cut(s)	19, 310, 316, 319, 385, 388, 391, 412, 513
MroNI	GCCGGC	1 cut(s)	278
MseI	TTAA	1 cut(s)	102
MspI	CCGG	4 cut(s)	144, 227, 279, 389
MspR9I	CCNGG	1 cut(s)	145
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	431
NaeI	GCCGGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	3 cut(s)	514, 518, 527
NgoMIV	GCCGGC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	212, 406, 416
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	163, 472
PflFI	GACNNNGTC	1 cut(s)	370
PkrI	GCNGC	3 cut(s)	427, 430, 433
Ple19I	CGATCG	2 cut(s)	517, 521
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	370
PvuI	CGATCG	2 cut(s)	517, 521
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	3 cut(s)	426, 429, 432
Sau3AI	GATC	3 cut(s)	514, 518, 527
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	8 cut(s)	19, 48, 84, 95, 330, 371, 423, 491
SfcI	CTRYAG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	62, 300, 460, 478
SsiI	CCGC	3 cut(s)	22, 119, 432
StyD4I	CCNGG	1 cut(s)	143
TaiI	ACGT	2 cut(s)	84, 371
TaqI	TCGA	3 cut(s)	186, 517, 521
TasI	AATT	4 cut(s)	62, 300, 460, 478
TatI	WGTACW	1 cut(s)	449
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	163, 472
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	425, 428
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	69, 187
TspGWI	ACGGA	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	370
XceI	RCATGY	1 cut(s)	406
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.