AT2G21045

Rhodanese-like domain-containing protein 19, mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013561
Physical Location & Seq
Forward (+)
9027730 .. 9029058
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21045.1

Sequence Viewer

Length: 510 bp
ATGTATACATATTCTCTCCTCAACCTTTCTCATTGCAGAAGACAAACCAGAAAGAAAAGAAAAACAGATCACACCGAAGGCTTTCTCATGGAGGAAACAAAACCAAAGACCGTTGAAGATGTTGAGACCGTTGATGTTTATACAGCTAAAGGCTTTCTTAGTACTGGTCACCGATATCTCGACGTAAGGACAAATGAAGAATTTGCCAAGAGTCATGTTGAGGAGGCTTTGAACATTCCTTATATGTTCAAAACAGATGAAGGTAGGGTTATAAATCCTGATTTCCTTTCTCAAGTGGCATCGGTTTGCAAGAAAGATGAACATTTGATCGTGGCTTGTAACGCTGGAGGAAGAGGAAGTCGTGCTTGCGTTGATCTTCTTAACGAGGGGTACGACCATGTGGCTAACATGGGGGGAGGCTACTCGGCTTGGGTTGACGCTGGATTCGCCGGGGACAAACCCCCGGAAGACCTCAAGATTGCTTGCAAGTTCAGGCCAAAGGAAAACTAA

Protein Analysis

169

Amino Acids

19.04

Weight (kDa)

6.31

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhodanese PF00581 58 - 146 7.2e-15 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21045
fragaria_vesca FvH4_6g39880 FvH4_6g39880
malus_domestica MD09G1135800.v1.1
prunus_persica Prupe.3G190900_v2.0.a1
pyrus_communis pycom09g05680
rosa_chinensis RchiOBHm_Chr2g0154401
rosa_laevigata RLG00000020775
rosa_multiflora Rmu_sc0003808.1_g000009 Rmu_sc0025687.1_g000004 Rmu_sc0032891.1_g000001
rosa_roxburghii Rroxscaffold_2G00094360
rosa_rugosa Rorug02G0444200
rosa_samantha Rh2AG508500 Rh2BG519800 Rh2CG494000 Rh2DG530000
rosa_wichuraiana Rw2G041760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 272
AccI GTMKAC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 200
AfaI GTAC 2 cut(s) 163, 392
AgsI TTSAA 3 cut(s) 116, 232, 250
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 200
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
Asp700I GAANNNNTTC 1 cut(s) 81
AsuC2I CCSGG 2 cut(s) 451, 464
AsuHPI GGTGA 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 46, 474
BcnI CCSGG 2 cut(s) 451, 464
BcoDI GTCTC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 451, 464
BmrFI CCNGG 2 cut(s) 451, 464
BmsI GCATC 1 cut(s) 308
BpiI GAAGAC 2 cut(s) 46, 474
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 276, 458
BpuMI CCSGG 2 cut(s) 451, 464
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 450, 462
Bse1I ACTGG 1 cut(s) 169
Bse3DI GCAATG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 450, 462
BseMI GCAATG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 2 cut(s) 8, 236
BshFI GGCC 1 cut(s) 496
BsiSI CCGG 2 cut(s) 450, 464
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 67, 327, 373
BspANI GGCC 1 cut(s) 496
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 450, 462
BssMI GATC 3 cut(s) 67, 327, 373
BssNAI GTATAC 1 cut(s) 6
Bst1107I GTATAC 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 112, 130
Bst6I CTCTTC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 367, 484
BstDEI CTNAG 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 167
BstKTI GATC 3 cut(s) 70, 330, 376
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 67, 327, 373
BstMWI GCNNNNNNNGC 2 cut(s) 341, 446
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 449, 462
BstV2I GAAGAC 2 cut(s) 46, 474
BstZ17I GTATAC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 496
Cac8I GCNNGC 2 cut(s) 367, 484
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 162, 391
CviAII CATG 4 cut(s) 88, 215, 398, 409
CviJI RGCY 9 cut(s) 81, 146, 153, 227, 335, 404, 420, 428, 496
CviKI_1 RGCY 9 cut(s) 81, 146, 153, 227, 335, 404, 420, 428, 496
CviQI GTAC 2 cut(s) 162, 391
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 69, 329, 375
DpnII GATC 3 cut(s) 67, 327, 373
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
Eco31I GGTCTC 1 cut(s) 119
Eco32I GATATC 1 cut(s) 176
Eco91I GGTNACC 1 cut(s) 167
EcoO65I GGTNACC 1 cut(s) 167
EcoRV GATATC 1 cut(s) 176
FaeI CATG 4 cut(s) 91, 218, 401, 412
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 349, 381
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 87, 214, 397, 408
FblI GTMKAC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 496
HapII CCGG 2 cut(s) 450, 464
HgaI GACGC 1 cut(s) 446
Hin1II CATG 4 cut(s) 91, 218, 401, 412
HincII GTYRAC 1 cut(s) 436
HindII GTYRAC 1 cut(s) 436
HinfI GANTC 2 cut(s) 211, 444
HpaII CCGG 2 cut(s) 450, 464
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 2 cut(s) 6, 436
Hpy188III TCNNGA 3 cut(s) 179, 278, 475
Hpy8I GTNNAC 2 cut(s) 6, 436
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 71, 254
HpyCH4III ACNGT 2 cut(s) 112, 130
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 36, 309, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 446
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 4 cut(s) 91, 218, 401, 412
Kzo9I GATC 3 cut(s) 67, 327, 373
LpnPI CCDG 8 cut(s) 61, 150, 291, 330, 426, 463, 477, 478
LweI GCATC 1 cut(s) 308
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 167, 338
MalI GATC 3 cut(s) 69, 329, 375
MboI GATC 3 cut(s) 67, 327, 373
MboII GAAGA 6 cut(s) 51, 128, 209, 363, 368, 479
MluCI AATT 1 cut(s) 200
MlyI GAGTC 1 cut(s) 220
MnlI CCTC 9 cut(s) 29, 85, 214, 217, 341, 347, 379, 410, 482
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 381
MspI CCGG 2 cut(s) 450, 464
MspR9I CCNGG 2 cut(s) 451, 464
MwoI GCNNNNNNNGC 2 cut(s) 341, 446
NciI CCSGG 2 cut(s) 451, 464
NdeII GATC 3 cut(s) 67, 327, 373
NlaIII CATG 4 cut(s) 91, 218, 401, 412
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 444
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PsiI TTATAA 1 cut(s) 272
PspEI GGTNACC 1 cut(s) 167
RsaI GTAC 2 cut(s) 163, 392
RsaNI GTAC 2 cut(s) 162, 391
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 3 cut(s) 67, 327, 373
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 1 cut(s) 220
ScrFI CCNGG 2 cut(s) 451, 464
SetI ASST 5 cut(s) 27, 148, 186, 265, 474
SfaNI GCATC 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 291, 473
SmoI CTYRAG 2 cut(s) 291, 473
Sse9I AATT 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 449, 462
TaaI ACNGT 2 cut(s) 112, 130
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 1 cut(s) 444
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TseFI GTSAC 1 cut(s) 167
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 210, 273, 333
XapI RAATTY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 81
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.