Rorug02G0444200

Rhodanese-like domain-containing protein 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013561
Physical Location & Seq
Reverse (-)
57080275 .. 57080503
229 bp
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UTR
Exon/CDS
Intron
Rorug02G0444200.1

Sequence Viewer

Length: 201 bp
ATGTTCGTATTATTCCTCCAACGAGGTTCGTATTATTCCTCCAACGATCGAGCAAATGGAGAAGATGGGGTGAGAAAGGTCATGAAGATGTTGAAGGATGAGTTGGAGCTCACTATGGCTCTCTCTGGCTGTCCTAGTGTTAAGGATATTACCAGGAGCCACGTGAGAACAGAATGTGATAGACTCCGCTCCCATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0016491 GO:0030611 GO:0042221 GO:0046685 GO:0050896 GO:0055114 GO:0071722 GO:0098754
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese

Protein Analysis

66

Amino Acids

7.59

Weight (kDa)

8.74

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FMN_dh PF01070 17 - 56 3.7e-10 FMN-dependent dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21045
fragaria_vesca FvH4_6g39880 FvH4_6g39880
malus_domestica MD09G1135800.v1.1
prunus_persica Prupe.3G190900_v2.0.a1
pyrus_communis pycom09g05680
rosa_chinensis RchiOBHm_Chr2g0154401
rosa_laevigata RLG00000020775
rosa_multiflora Rmu_sc0003808.1_g000009 Rmu_sc0025687.1_g000004 Rmu_sc0032891.1_g000001
rosa_roxburghii Rroxscaffold_2G00094360
rosa_rugosa Rorug02G0444200
rosa_samantha Rh2AG508500 Rh2BG519800 Rh2CG494000 Rh2DG530000
rosa_wichuraiana Rw2G041760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 1 cut(s) 187
AcvI CACGTG 1 cut(s) 163
AgsI TTSAA 1 cut(s) 94
AjnI CCWGG 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 111
AsuHPI GGTGA 1 cut(s) 82
BanII GRGCYC 1 cut(s) 111
BbrPI CACGTG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 154
BsaAI YACGTR 1 cut(s) 163
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 158
BsrBI CCGCTC 1 cut(s) 189
BssMI GATC 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 163
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 152
BtsCI GGATG 1 cut(s) 103
CciI TCATGA 1 cut(s) 81
CviAII CATG 1 cut(s) 82
CviJI RGCY 4 cut(s) 109, 119, 129, 159
CviKI_1 RGCY 4 cut(s) 109, 119, 129, 159
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco72I CACGTG 1 cut(s) 163
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 83, 116
FatI CATG 1 cut(s) 81
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 135
Hin1II CATG 1 cut(s) 85
HinfI GANTC 1 cut(s) 183
HphI GGTGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 85
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 106, 156, 194
LpnPI CCDG 3 cut(s) 111, 139, 166
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 162
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 189
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 74, 97
MhlI GDGCHC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 3 cut(s) 43, 66, 84
MnlI CCTC 3 cut(s) 17, 26, 49
MseI TTAA 2 cut(s) 141, 199
MslI CAYNNNNRTG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 154
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 158
PagI TCATGA 1 cut(s) 81
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 1 cut(s) 177
PmaCI CACGTG 1 cut(s) 163
PmlI CACGTG 1 cut(s) 163
PpsI GAGTC 1 cut(s) 177
Ppu21I YACGTR 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 152
PspCI CACGTG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 158
PvuI CGATCG 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 86
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 141, 199
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 1 cut(s) 111
SetI ASST 4 cut(s) 28, 81, 111, 165
SgeI CNNG 9 cut(s) 35, 62, 94, 138, 147, 165, 166, 173, 175
SmiMI CAYNNNNRTG 1 cut(s) 86
SsiI CCGC 1 cut(s) 187
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 152
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 49
Tru1I TTAA 2 cut(s) 141, 199
Tru9I TTAA 2 cut(s) 141, 199
TspDTI ATGAA 1 cut(s) 98
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.