FvH4_6g39880

Rhodanese-like domain-containing protein 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013561
Physical Location & Seq
Reverse (-)
31509717 .. 31511160
1444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39880.t2

Sequence Viewer

Length: 414 bp
ATGGCCGAAGCAAAAAGGGGTGAAGATGTTAAGAGCGTTGATGTGTTTACTGCAAAAGGTCTGCTCAGCACCGGGCACCTGTATCTGGATGTCAGGACAAGTGAGGAGTTCAACACCAGCCATATTGAAAATGCCATCAACGTTCCTTACATGTTCAAGACCCAAGAAGGTAAAGTGAAGAATCCTGAGTTTCTCATCCGAATTTCCTCGATACTCAAGAAACAGGATCACCTAGTCGTGGGTTGCAACAGCGGAGGCAGATCACTTAAAGCTTGTGTAGATCTTCTCAATGAAGGTTTCGAGCATGTCACTAACATGGAAAGGGGCTACTCTTCATGGGTGGACAATGGACATGCTGGTGACAAAGATAAACCATCTGATGAACTAAAAATCGCTTGCAAGTTCCGACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0016491 GO:0030611 GO:0042221 GO:0046685 GO:0050896 GO:0055114 GO:0071722 GO:0098754
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rhodanese

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

6.51

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhodanese PF00581 21 - 97 3.5e-11 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013561)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21045
fragaria_vesca FvH4_6g39880 FvH4_6g39880
malus_domestica MD09G1135800.v1.1
prunus_persica Prupe.3G190900_v2.0.a1
pyrus_communis pycom09g05680
rosa_chinensis RchiOBHm_Chr2g0154401
rosa_laevigata RLG00000020775
rosa_multiflora Rmu_sc0003808.1_g000009 Rmu_sc0025687.1_g000004 Rmu_sc0032891.1_g000001
rosa_roxburghii Rroxscaffold_2G00094360
rosa_rugosa Rorug02G0444200
rosa_samantha Rh2AG508500 Rh2BG519800 Rh2CG494000 Rh2DG530000
rosa_wichuraiana Rw2G041760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 75
AciI CCGC 1 cut(s) 252
AclI AACGTT 1 cut(s) 141
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 85, 238
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 112, 128, 157
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
AlwI GGATC 1 cut(s) 234
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 32, 221, 371
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 75
BccI CCATC 2 cut(s) 143, 382
BcnI CCSGG 1 cut(s) 73
BfaI CTAG 1 cut(s) 233
BglII AGATCT 1 cut(s) 280
BlpI GCTNAGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 73
Bpu1102I GCTNAGC 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 238
BseGI GGATG 2 cut(s) 94, 195
BseLI CCNNNNNNNGG 2 cut(s) 85, 238
BseMII CTCAG 2 cut(s) 79, 177
BseRI GAGGAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 78
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 85, 238
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 3 cut(s) 226, 260, 280
Bsp1720I GCTNAGC 1 cut(s) 65
BspACI CCGC 1 cut(s) 252
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 78, 178
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 75
BssMI GATC 3 cut(s) 226, 260, 280
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 65, 186
BstF5I GGATG 2 cut(s) 94, 195
BstKTI GATC 3 cut(s) 229, 263, 283
BstMBI GATC 3 cut(s) 226, 260, 280
BstNSI RCATGY 3 cut(s) 154, 308, 356
BstSCI CCNGG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 94, 195
Cac8I GCNNGC 1 cut(s) 397
CviAII CATG 5 cut(s) 151, 305, 316, 336, 353
CviJI RGCY 4 cut(s) 5, 120, 272, 327
CviKI_1 RGCY 4 cut(s) 5, 120, 272, 327
DdeI CTNAG 2 cut(s) 65, 186
DpnI GATC 3 cut(s) 228, 262, 282
DpnII GATC 3 cut(s) 226, 260, 280
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
FaeI CATG 5 cut(s) 154, 308, 319, 339, 356
FaiI YATR 6 cut(s) 123, 152, 306, 317, 337, 354
FatI CATG 5 cut(s) 150, 304, 315, 335, 352
FokI GGATG 2 cut(s) 101, 182
FspBI CTAG 1 cut(s) 233
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 72
Hin1II CATG 5 cut(s) 154, 308, 319, 339, 356
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 1 cut(s) 181
HpaII CCGG 1 cut(s) 72
HphI GGTGA 3 cut(s) 32, 221, 371
Hpy166II GTNNAC 2 cut(s) 48, 343
Hpy188I TCNGA 3 cut(s) 200, 379, 407
Hpy188III TCNNGA 5 cut(s) 86, 94, 157, 185, 217
Hpy8I GTNNAC 2 cut(s) 48, 343
HpyAV CCTTC 2 cut(s) 161, 287
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 53, 246, 399
HpyF3I CTNAG 2 cut(s) 65, 186
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 5 cut(s) 154, 308, 319, 339, 356
Kzo9I GATC 3 cut(s) 226, 260, 280
LpnPI CCDG 8 cut(s) 71, 79, 85, 92, 130, 198, 209, 342
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 2 cut(s) 307, 359
MalI GATC 3 cut(s) 228, 262, 282
MboI GATC 3 cut(s) 226, 260, 280
MboII GAAGA 4 cut(s) 35, 190, 275, 324
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 201
MnlI CCTC 3 cut(s) 97, 217, 248
MseI TTAA 2 cut(s) 30, 267
MslI CAYNNNNRTG 2 cut(s) 314, 357
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NdeII GATC 3 cut(s) 226, 260, 280
NlaIII CATG 5 cut(s) 154, 308, 319, 339, 356
NlaIV GGNNCC 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 307, 359
NspI RCATGY 3 cut(s) 154, 308, 356
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 314, 357
SaqAI TTAA 2 cut(s) 30, 267
Sau3AI GATC 3 cut(s) 226, 260, 280
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 78
SetI ASST 8 cut(s) 61, 81, 144, 172, 234, 274, 298, 412
SmiMI CAYNNNNRTG 2 cut(s) 314, 357
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 252
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 71
TaiI ACGT 1 cut(s) 144
TaqI TCGA 2 cut(s) 209, 300
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 30, 267
Tru9I TTAA 2 cut(s) 30, 267
TseFI GTSAC 2 cut(s) 307, 359
Tsp45I GTSAC 2 cut(s) 307, 359
TspDTI ATGAA 3 cut(s) 306, 324, 396
XapI RAATTY 1 cut(s) 201
XceI RCATGY 3 cut(s) 154, 308, 356
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.