Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032891.1

Orthogroup ID

OG0013561

Physical Location & Seq

Genomic Coordinates Reverse (-)

532 .. 1532

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032891.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgaaaaggggtgaagatgttacgagcgttgatgtatttactgcaaaaggtctgctcagcaccggtcacctgtatctggatgtcaggacgaatgaggagttcaacacgagccacgttgaaaatgccttcaatgttccttacatgttcaagacccaagaaggtaaagtgaaaaatcctgaatttctaacccatatttcctcaatactcaagaaacaggatcacttagtcgtgggttgcaacagcggaggcagatcacttaaagcttgtgtagatcttcttaatgcaggtttcgagcatgtcactaacatggaagggggctactcttcatgggtggacagtggacttgctgctgacaaagacaaacgatctggtgaattaaaagtcgcttgcaagttccgcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0016491 GO:0030611 GO:0042221 GO:0046685 GO:0050896 GO:0055114 GO:0071722 GO:0098754

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

6.96

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013561)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21045
fragaria_vesca	FvH4_6g39880 FvH4_6g39880
malus_domestica	MD09G1135800.v1.1
prunus_persica	Prupe.3G190900_v2.0.a1
pyrus_communis	pycom09g05680
rosa_chinensis	RchiOBHm_Chr2g0154401
rosa_laevigata	RLG00000020775
rosa_multiflora	Rmu_sc0003808.1_g000009 Rmu_sc0025687.1_g000004 Rmu_sc0032891.1_g000001
rosa_roxburghii	Rroxscaffold_2G00094360
rosa_rugosa	Rorug02G0444200
rosa_samantha	Rh2AG508500 Rh2BG519800 Rh2CG494000 Rh2DG530000
rosa_wichuraiana	Rw2G041760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AciI	CCGC	2 cut(s)	243, 397
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	141
AgeI	ACCGGT	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	103, 119, 130, 148
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AlwI	GGATC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	179
AsiGI	ACCGGT	1 cut(s)	62
AsuHPI	GGTGA	3 cut(s)	23, 59, 383
BauI	CACGAG	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	334
BfuAI	ACCTGC	1 cut(s)	275
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	348
BlpI	GCTNAGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	62
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	334
BshTI	ACCGGT	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	217, 251, 271, 365
Bsp1720I	GCTNAGC	1 cut(s)	56
BspACI	CCGC	2 cut(s)	243, 397
BspCNI	CTCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	4 cut(s)	217, 251, 271, 365
BssSI	CACGAG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	1 cut(s)	328
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	2 cut(s)	56, 223
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	4 cut(s)	220, 254, 274, 368
BstMBI	GATC	4 cut(s)	217, 251, 271, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNSI	RCATGY	2 cut(s)	145, 299
BstPI	GGTNACC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	343
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	62
CspAI	ACCGGT	1 cut(s)	62
CviAII	CATG	4 cut(s)	142, 296, 307, 327
CviJI	RGCY	3 cut(s)	111, 263, 318
CviKI_1	RGCY	3 cut(s)	111, 263, 318
DdeI	CTNAG	2 cut(s)	56, 223
DpnI	GATC	4 cut(s)	219, 253, 273, 367
DpnII	GATC	4 cut(s)	217, 251, 271, 365
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	386
Eco91I	GGTNACC	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	65
FaeI	CATG	4 cut(s)	145, 299, 310, 330
FaiI	YATR	5 cut(s)	143, 192, 297, 308, 328
FatI	CATG	4 cut(s)	141, 295, 306, 326
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	348
GluI	GCNGC	1 cut(s)	348
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	4 cut(s)	145, 299, 310, 330
HindIII	AAGCTT	1 cut(s)	261
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	23, 59, 383
Hpy166II	GTNNAC	2 cut(s)	334, 341
Hpy188III	TCNNGA	5 cut(s)	77, 85, 148, 176, 208
Hpy8I	GTNNAC	2 cut(s)	334, 341
HpyAV	CCTTC	3 cut(s)	136, 152, 305
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	44, 237, 284, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	2 cut(s)	56, 223
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	145, 299, 310, 330
Kzo9I	GATC	4 cut(s)	217, 251, 271, 365
LpnPI	CCDG	8 cut(s)	62, 70, 76, 83, 189, 200, 270, 354
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	3 cut(s)	19, 65, 298
MalI	GATC	4 cut(s)	219, 253, 273, 367
MboI	GATC	4 cut(s)	217, 251, 271, 365
MboII	GAAGA	3 cut(s)	26, 266, 315
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	2 cut(s)	179, 374
MnlI	CCTC	3 cut(s)	88, 208, 239
MseI	TTAA	3 cut(s)	258, 279, 377
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeII	GATC	4 cut(s)	217, 251, 271, 365
NlaIII	CATG	4 cut(s)	145, 299, 310, 330
NmuCI	GTSAC	2 cut(s)	65, 298
NspI	RCATGY	2 cut(s)	145, 299
PciI	ACATGT	1 cut(s)	141
PinAI	ACCGGT	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	349
PscI	ACATGT	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	271
RseI	CAYNNNNRTG	1 cut(s)	305
SaqAI	TTAA	3 cut(s)	258, 279, 377
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	4 cut(s)	217, 251, 271, 365
SetI	ASST	6 cut(s)	52, 72, 117, 163, 265, 289
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	179, 374
SsiI	CCGC	2 cut(s)	243, 397
TaaI	ACNGT	1 cut(s)	338
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	179, 374
Tru1I	TTAA	3 cut(s)	258, 279, 377
Tru9I	TTAA	3 cut(s)	258, 279, 377
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	2 cut(s)	65, 298
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	65, 298
TspDTI	ATGAA	2 cut(s)	17, 315
TspRI	CASTG	1 cut(s)	343
XapI	RAATTY	1 cut(s)	179
XceI	RCATGY	2 cut(s)	145, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.